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Oryza sativa
cluster # 4373 cluster # 4373       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4373#0 length = 864 sequences # 1  
consensus_4373#1 length = 598 sequences # 1  
consensus_4373#2 length = 263 sequences # 1  

consensusID : consensus_4373#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 864
fasta sequence
                              [CTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGTAGCAGATTTCTTCTCGATTTTTCTCTTTCTTTCGTGATTCCGTCCCCATTTCTGGGCATCTTGAGAGCTTAATTCTATTGTTTCGAACGGGCAGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGGTTTAGCTCCTCTGCAAAATTCATTCTAACCTGTGAAAAAAATTCTCTGAAGAATTTCGCCGTTGAATGTTTGGTCTCTCCGATCCTGCGCCGCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGTGTTAAAATTATAGAGATCTTTCTTGTTCAGAAATTACTATTATTATAGTACTACCTCTGTTTTCGTTTCCAAATAAATGACGTT]

[+] EMBL AK067046             [CTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGTAGCAGATTTCTTCTCGATTTTTCTCTTTCTTTCGTGATTCCGTCCCCATTTCTGGGCATCTTGAGAGCTTAATTCTATTGTTTCGAACGGGCAGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGGTTTAGCTCCTCTGCAAAATTCATTCTAACCTGTGAAAAAAATTCTCTGAAGAATTTCGCCGTTGAATGTTTGGTCTCTCCGATCCTGCGCCGCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGTGTTAAAATTATAGAGATCTTTCTTGTTCAGAAATTACTATTATTATAGTACTACCTCTGTTTTCGTTTCCAAATAAATGACGTT]


>consensus_4373#0 CTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTC CATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTG TCCGTGACGTCAGCATGCTCTGCCGCTCCCGGTAGCAGATTTCTTCTCGATTTTTCTCTT TCTTTCGTGATTCCGTCCCCATTTCTGGGCATCTTGAGAGCTTAATTCTATTGTTTCGAA CGGGCAGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGC GAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGC CGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGC GTGCTCCAGGTTTAGCTCCTCTGCAAAATTCATTCTAACCTGTGAAAAAAATTCTCTGAA GAATTTCGCCGTTGAATGTTTGGTCTCTCCGATCCTGCGCCGCAGAACGTGGGGCTGACG TCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTC CTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTC TTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTT TTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGT GTTAAAATTATAGAGATCTTTCTTGTTCAGAAATTACTATTATTATAGTACTACCTCTGT TTTCGTTTCCAAATAAATGACGTT



consensusID : consensus_4373#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence
                              [ACTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCGGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGGTGTTAAATT]

[+] EMBL CA754098             [ACTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCGGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGGTGTTAAATT]


>consensus_4373#1 ACTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCT CCATCTCGCCGCCACGCCGGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTT GTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGGTCGCTGGTGAGCATGAGGAGGCAGAA GGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGG CGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCAC CGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGAACGTGGGGCTGACGTCGCCGGTGCC GACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCA GTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTAC CAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGC GTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGGTGTTAAATT



consensusID : consensus_4373#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence
                              [TCCTGCATCACCTCACCACCATNGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCNCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTNCGTGACGTCAGCATNCTCTGCGTCCCNGGTCGCTGGTGAGATGAGGAGGCAGAAGGGAGGTCCTGACGTTCCGGTGCGAGAGGGANCAAGGNGCNGGCGCGCGNGNGGTTGCTGACGTTTGCTAGCNGGGCATGTCGGTTCG]

[+] EMBL OSC9141              [TCCTGCATCACCTCACCACCATNGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCNCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTNCGTGACGTCAGCATNCTCTGCGTCCCNGGTCGCTGGTGAGATGAGGAGGCAGAAGGGAGGTCCTGACGTTCCGGTGCGAGAGGGANCAAGGNGCNGGCGCGCGNGNGGTTGCTGACGTTTGCTAGCNGGGCATGTCGGTTCG]


>consensus_4373#2 TCCTGCATCACCTCACCACCATNGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCNCCTCC ATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGT NCGTGACGTCAGCATNCTCTGCGTCCCNGGTCGCTGGTGAGATGAGGAGGCAGAAGGGAG GTCCTGACGTTCCGGTGCGAGAGGGANCAAGGNGCNGGCGCGCGNGNGGTTGCTGACGTT TGCTAGCNGGGCATGTCGGTTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4373#0      -CTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCT 59
consensus_4373#1      ACTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCT 60
consensus_4373#2      --TCCTGCATCACCTCACCACCATNGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCNCCT 58
                        ********************** ******************************* ***

consensus_4373#0      CCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTT 119
consensus_4373#1      CCATCTCGCCGCCACGCCGGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTT 120
consensus_4373#2      CCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTT 118
                      ****************** *****************************************

consensus_4373#0      GTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGTAGCAGATTTCTTCTCGATTTTTCTCT 179
consensus_4373#1      GTCCGTGACGTCAGCATGCTCTGCCGCTCCCGG--------------------------- 153
consensus_4373#2      GTNCGTGACGTCAGCATNCTCTGC-GTCCCNGG--------------------------- 150
                      ** ************** ****** *  ** **                           

consensus_4373#0      TTCTTTCGTGATTCCGTCCCCATTTCTGGGCATCTTGAGAGCTTAATTCTATTGTTTCGA 239
consensus_4373#1      ------------------------------------------------------------
consensus_4373#2      ------------------------------------------------------------
                                                                                  

consensus_4373#0      ACGGGCAGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTG 299
consensus_4373#1      ---------GTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTG 204
consensus_4373#2      ----------TCGCTGGTGAG-ATGAGGAGGCAGAAGG-GAGGTCC-TGACGTTCCGGTG 197
                                *********** **************** ******* ****  *******

consensus_4373#0      CGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAG 359
consensus_4373#1      CGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAG 264
consensus_4373#2      CGAG-AGGGANCAAGGNGCNGGCGCGCGNGNGGTTGCTGACGTTTGCTAGCNGGGCAT-G 255
                      **** ***** * * * ** *  ***   * **  ** *  *  **   *   ***   *

consensus_4373#0      CCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGG 419
consensus_4373#1      CCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGG 324
consensus_4373#2      TCGGTTCG---------------------------------------------------- 263
                       **   **                                                    

consensus_4373#0      CGTGCTCCAGGTTTAGCTCCTCTGCAAAATTCATTCTAACCTGTGAAAAAAATTCTCTGA 479
consensus_4373#1      CGTGCTCCAG-------------------------------------------------- 334
consensus_4373#2      ------------------------------------------------------------
                                                                                  

consensus_4373#0      AGAATTTCGCCGTTGAATGTTTGGTCTCTCCGATCCTGCGCCGCAGAACGTGGGGCTGAC 539
consensus_4373#1      ----------------------------------------------AACGTGGGGCTGAC 348
consensus_4373#2      ------------------------------------------------------------
                                                                                  

consensus_4373#0      GTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTT 599
consensus_4373#1      GTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTT 408
consensus_4373#2      ------------------------------------------------------------
                                                                                  

consensus_4373#0      CCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTT 659
consensus_4373#1      CCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTT 468
consensus_4373#2      ------------------------------------------------------------
                                                                                  

consensus_4373#0      CTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGT 719
consensus_4373#1      CTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGT 528
consensus_4373#2      ------------------------------------------------------------
                                                                                  

consensus_4373#0      TTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGG 779
consensus_4373#1      TTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGG 588
consensus_4373#2      ------------------------------------------------------------
                                                                                  

consensus_4373#0      -TGTTAAAATTATAGAGATCTTTCTTGTTCAGAAATTACTATTATTATAGTACTACCTCT 838
consensus_4373#1      GTGTTAAATT-------------------------------------------------- 598
consensus_4373#2      ------------------------------------------------------------
                                                                                  

consensus_4373#0      GTTTTCGTTTCCAAATAAATGACGTT 864
consensus_4373#1      --------------------------
consensus_4373#2      --------------------------
                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)