These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 864 fasta sequence [CTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGTAGCAGATTTCTTCTCGATTTTTCTCTTTCTTTCGTGATTCCGTCCCCATTTCTGGGCATCTTGAGAGCTTAATTCTATTGTTTCGAACGGGCAGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGGTTTAGCTCCTCTGCAAAATTCATTCTAACCTGTGAAAAAAATTCTCTGAAGAATTTCGCCGTTGAATGTTTGGTCTCTCCGATCCTGCGCCGCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGTGTTAAAATTATAGAGATCTTTCTTGTTCAGAAATTACTATTATTATAGTACTACCTCTGTTTTCGTTTCCAAATAAATGACGTT] [+] EMBL AK067046 [CTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGTAGCAGATTTCTTCTCGATTTTTCTCTTTCTTTCGTGATTCCGTCCCCATTTCTGGGCATCTTGAGAGCTTAATTCTATTGTTTCGAACGGGCAGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGGTTTAGCTCCTCTGCAAAATTCATTCTAACCTGTGAAAAAAATTCTCTGAAGAATTTCGCCGTTGAATGTTTGGTCTCTCCGATCCTGCGCCGCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGTGTTAAAATTATAGAGATCTTTCTTGTTCAGAAATTACTATTATTATAGTACTACCTCTGTTTTCGTTTCCAAATAAATGACGTT] consensusID : consensus_4373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [ACTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCGGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGGTGTTAAATT] [+] EMBL CA754098 [ACTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCTCCATCTCGCCGCCACGCCGGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTGCGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAGCCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGGCGTGCTCCAGAACGTGGGGCTGACGTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTTCCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTTCTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGTTTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGGGTGTTAAATT] consensusID : consensus_4373#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [TCCTGCATCACCTCACCACCATNGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCNCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTNCGTGACGTCAGCATNCTCTGCGTCCCNGGTCGCTGGTGAGATGAGGAGGCAGAAGGGAGGTCCTGACGTTCCGGTGCGAGAGGGANCAAGGNGCNGGCGCGCGNGNGGTTGCTGACGTTTGCTAGCNGGGCATGTCGGTTCG] [+] EMBL OSC9141 [TCCTGCATCACCTCACCACCATNGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCNCCTCCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTTGTNCGTGACGTCAGCATNCTCTGCGTCCCNGGTCGCTGGTGAGATGAGGAGGCAGAAGGGAGGTCCTGACGTTCCGGTGCGAGAGGGANCAAGGNGCNGGCGCGCGNGNGGTTGCTGACGTTTGCTAGCNGGGCATGTCGGTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4373#0 -CTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCT 59 consensus_4373#1 ACTCCTGCATCACCTCACCACCATGGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCGCCT 60 consensus_4373#2 --TCCTGCATCACCTCACCACCATNGCTCAGCTCCTCTCCTCCTCCGCTCCTCCCCNCCT 58 ********************** ******************************* *** consensus_4373#0 CCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTT 119 consensus_4373#1 CCATCTCGCCGCCACGCCGGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTT 120 consensus_4373#2 CCATCTCGCCGCCACGCCAGCTTGCTTCTCCTCCTCTTCAGGCCATGGCGTCTCCCGCTT 118 ****************** ***************************************** consensus_4373#0 GTCCGTGACGTCAGCATGCTCTGCCGCTCCCGGTAGCAGATTTCTTCTCGATTTTTCTCT 179 consensus_4373#1 GTCCGTGACGTCAGCATGCTCTGCCGCTCCCGG--------------------------- 153 consensus_4373#2 GTNCGTGACGTCAGCATNCTCTGC-GTCCCNGG--------------------------- 150 ** ************** ****** * ** ** consensus_4373#0 TTCTTTCGTGATTCCGTCCCCATTTCTGGGCATCTTGAGAGCTTAATTCTATTGTTTCGA 239 consensus_4373#1 ------------------------------------------------------------ consensus_4373#2 ------------------------------------------------------------ consensus_4373#0 ACGGGCAGGGTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTG 299 consensus_4373#1 ---------GTCGCTGGTGAGCATGAGGAGGCAGAAGGCGAGGTCCCTGACCGTCCGGTG 204 consensus_4373#2 ----------TCGCTGGTGAG-ATGAGGAGGCAGAAGG-GAGGTCC-TGACGTTCCGGTG 197 *********** **************** ******* **** ******* consensus_4373#0 CGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAG 359 consensus_4373#1 CGAGCAGGGAGCCAAGGGCGGCGGCGGCGGCGGCGGCGGTGGGCTGGACGTGTGGCTCAG 264 consensus_4373#2 CGAG-AGGGANCAAGGNGCNGGCGCGCGNGNGGTTGCTGACGTTTGCTAGCNGGGCAT-G 255 **** ***** * * * ** * *** * ** ** * * ** * *** * consensus_4373#0 CCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGG 419 consensus_4373#1 CCGCGGCGCCATGCTCGGCTTCGTCGCCGCCATCACCGTCGAGCTGACCACCGGCAAAGG 324 consensus_4373#2 TCGGTTCG---------------------------------------------------- 263 ** ** consensus_4373#0 CGTGCTCCAGGTTTAGCTCCTCTGCAAAATTCATTCTAACCTGTGAAAAAAATTCTCTGA 479 consensus_4373#1 CGTGCTCCAG-------------------------------------------------- 334 consensus_4373#2 ------------------------------------------------------------ consensus_4373#0 AGAATTTCGCCGTTGAATGTTTGGTCTCTCCGATCCTGCGCCGCAGAACGTGGGGCTGAC 539 consensus_4373#1 ----------------------------------------------AACGTGGGGCTGAC 348 consensus_4373#2 ------------------------------------------------------------ consensus_4373#0 GTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTT 599 consensus_4373#1 GTCGCCGGTGCCGACGGTGGCGCTGGCGCTCACCGGGGTGGTCGGCGTCGCCACCGCGTT 408 consensus_4373#2 ------------------------------------------------------------ consensus_4373#0 CCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTT 659 consensus_4373#1 CCTCATCTTCCAGTCGGCGTCGCAGGACTGATCGGACGATCGCCGCCGACGACGCAGCTT 468 consensus_4373#2 ------------------------------------------------------------ consensus_4373#0 CTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGT 719 consensus_4373#1 CTTGCTGCTTACCAATGGGCCAATGGCGTCACTCCATTGGTCTCCGTGTTCTTGGTGCGT 528 consensus_4373#2 ------------------------------------------------------------ consensus_4373#0 TTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGG 779 consensus_4373#1 TTTGCGTGATGCGTGTGTGTGGGGAGATGTGTTTCATAGGGAGGGGTCAAACTGTACCGG 588 consensus_4373#2 ------------------------------------------------------------ consensus_4373#0 -TGTTAAAATTATAGAGATCTTTCTTGTTCAGAAATTACTATTATTATAGTACTACCTCT 838 consensus_4373#1 GTGTTAAATT-------------------------------------------------- 598 consensus_4373#2 ------------------------------------------------------------ consensus_4373#0 GTTTTCGTTTCCAAATAAATGACGTT 864 consensus_4373#1 -------------------------- consensus_4373#2 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||