Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4375 cluster # 4375       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4375#0 length = 1078 sequences # 3  

consensusID : consensus_4375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1078
fasta sequence
                              [CCATCTCCCTGCAGCTACGTACTGTACTTGTTAGCAATCAATCCCATCAAATCATCCACCGCTCGCTGCTGCTGCTACGTACTATACAGCTTGATTAATTAGGTTTTACGACGACGGCAACGGGGACAGATATGACGGCCGCCCTGCAAGCGCTGCTCGACCCGACGGCGCTGTCCTTGGGCCTGCCCACGCCGGCGATCAACAAGGAGGAGTACCTCGCCATCTGCCTCGCCGCGCTCGCCTGCACGCGGGCGGGGAAGGCCCTGGTGGGAGTGGGAGGCCAGCAGCAGGTGCAGGCCTGCAATAAGTGGCTGTGCCCAGCGCCCGCGGCGCCTGAGGAGCTCCGCTTCCGGTGCACCGTCTGCGGGAAGGCCTTCGCCTCGTACCAGGCGCTCGGCGGACACAAGTCCAGCCACCGGAAGCCGCCTTCCCCGGGAGACCACTACGGCGCCGCCGCCGCGGCGCAGCAGCTGGCATCCGCTGGTGACTCGAAGGAGGACTCGGCGTCGTCAGCGGCCGGGAGCACTGGGCCGCACCGGTGCACCATCTGCAGGAGGAGCTTCGCGACGGGGCAGGCGCTCGGCGGCCACAAGCGCTGCCACTACTGGGACGGCACGTCGGTGTCCGTCTCCGTCTCGGCGTCCGCGTCGGCCGCCTCGTCGGCCGTCAGGAACTTCGACCTCAACCTGATGCCGCTGCCGGAGAGCACAGCCGCCGCCGGGATCAAGAGGTGGGCGGAGGAGGAGGAGGTGCAGAGTCCACTGCCGGTCAAGAAGCTCAGGATGTCCAACTAATTCATCATACGCCATCTTGTAAAAACAAGAGATCTGCCCATTGATCGACTCTATTGAACAGAGTCTATTCTTTGATTTTTTTTTTCTTTTCAACTCACTAATTGTTTGGTTTCTGTCATCGAGTATGCAACAAGCTAAGCTGGTGACCATGGATCTTCCAAGATTGATTGTCGCCAAGGGACATATATGGTTCTAGGAGTGTTGATTCATTTGATTCTTTGTATATTTGTTCAATCTAAAAATTAATGTACTCAATCTGCTCAATATATATAGACGCTATATTA]

[+] EMBL AK059839             [CCATCTCCCTGCAGCTACGTACTGTACTTGTTAGCAATCAATCCCATCAAATCATCCACCGCTCGCTGCTGCTGCTACGTACTATACAGCTTGATTAATTAGGTTTTACGACGACGGCAACGGGGACAGATATGACGGCCGCCCTGCAAGCGCTGCTCGACCCGACGGCGCTGTCCTTGGGCCTGCCCACGCCGGCGATCAACAAGGAGGAGTACCTCGCCATCTGCCTCGCCGCGCTCGCCTGCACGCGGGCGGGGAAGGCCCTGGTGGGAGTGGGAGGCCAGCAGCAGGTGCAGGCCTGCAATAAGTGGCTGTGCCCAGCGCCCGCGGCGCCTGAGGAGCTCCGCTTCCGGTGCACCGTCTGCGGGAAGGCCTTCGCCTCGTACCAGGCGCTCGGCGGACACAAGTCCAGCCACCGGAAGCCGCCTTCCCCGGGAGACCACTACGGCGCCGCCGCCGCGGCGCAGCAGCTGGCATCCGCTGGTGACTCGAAGGAGGACTCGGCGTCGTCAGCGGCCGGGAGCACTGGCCCGCACCGGTGCACCATCTGCAGGAGGAGCTTCGCGACGGGGCAGGCGCTCGGCGGCCACAAGCGCTGCCACTACTGGGACGGCACGTCGGTGTCCGTCTCCGTCTCGGCGTCCGCGTCGGCCGCCTCGTCGGCCGTCAGGAACTTCGACCTCAACCTGATGCCGCTGCCGGAGAGCACAGCCGCCGCCGGGATCAAGAGGTGGGCGGAGGAGGAGGAGGTGCAGAGTCCACTGCCGGTCAAGAAGCTCAGGATGTCCAACTAATTCATCATACGCCATCTTGTAAAAACAAGAGATCTGCCCATTGATCGACTCTATTGAACAGAGTCTATTCTTTGATTTTTTTTTTCTTTTCAACTCACTAATTGTTTGGTTTCTGTCATCGAGTATGCAACAAGCTAAGCTGGTGACCATGGATCTTCCAAGATTGATTGTCGCCAAGGGACATATATGGTTCTAGGAGTGTTGATTCATTTGATTCTTTGTATATTTGTTCAATCTAAAAATTAATGTACTCAATCTGCTCAATATATATAGACGCTATATTA]
[+] EMBL AY295345             [                        TACTTGTTAGCAATCAATCCCATCAAATCATCCACCGCTCGCTGCTGCTGCTACGTACTATACAGCTTGATTAATTAGGTTTTACGACGACGGCAACGGGGACAGATATGACGGCCGCCCTGCAAGCGCTGCTCGACCCGACGGCGCTGTCCTTGGGCCTGCCCACGCCGGCGATCAACAAGGAGGAGTACCTCGCCATCTGCCTCGCCGCGCTCGCCTGCACGCGGGCGGGGAAGGCCCTGGTGGGAGTGGGAGGCCAGCAGCAGGTGCAGGCCTGCAGTAAGTGGCTGTGCCCAGCGCCCGCGGCGCCTGAGGAGCTCCGCTTCCGGTGCACCGTCTGCGGGAAGGCCTTCGCCTCGTACCAGGCGCTCGGCGGACACAAGTCCAGCCACCGGAAGCCGCCTTCCCCGGGAGACCACTACGGCGCCGCCGCCGCGGCGCAGCAGCTGGCATCCGCTGGTGACTCGAAGGAGGACTCGGCGTCGTCAGCGGCCGGGAGCACTGGGCCGCACCGGTGCACCATCTGCAGGAGGAGCTTCGCGACGGGGCAGGCGCTCGGCGGCCACAAGCGCTGCCACTACTGGGACGGCACGTCGGTGTCCGTCTCCGTCTCGGCGTCCGCGTCGGCCGCCTCGTCGGCCGTCAGGAACTTCGACCTCAACCTGATGCCGCTGCCGGAGAGCACAGCCGCCGCCGGAATCAAGAGGTGGGCGGAGGAGGAGGAGGTGCAGAGTCCACTGCCGGTCAAGAAGCTCAGGATGTCCAACTAATTCATCATAC                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA754066             [                        TACTTGTTAGCAATCAATCCCATCAAATCATCCACCGCTCGCTGCTGCTGCTACGTACTATACAGCTTGATTAATTAGGTTTTACGACGACGGCNACGGGGACAGATATGACGGCCGCCCTGCAAGCGCTGCTCGACCCGACGGCGCTGTCCTTGGGCCTGCCCACGCCGGCGATCAACAAGGAGGAGTACCTCGCCATCTGCCTCGCCGCGCTCGCCTGCACGCGGGCGGGGAAGGCCCTGGTGGGAGTGGGAGGCCAGCAGCAGGTGCAGGCCTGCAATAAGTGGCTGTGCCCAGCGCCCGCGGCGCCTGAGGAGCTCCGCTTCCGGTGCACCGTCTGCGGGAAGGCCTTCGCCTCGTACCAGGCGCTCGGCGGACACAAGTCCAGCCACCGGAAGCCGCCTTCCCCGGGAGACCACTACGGCGCCGCCGCCGCGGCGCAACAGCTGGCATCCGCTGGTGACTCGAAGGAGGACTCGGCGTCGTCAGCGGCCGGGAGCACTGGGCCGCACCGGTGCACCATCTGCAGGAGGAGCTTCGCGACGGGGCAGGCGCTCGGCGGCCAC AGCGCTGCCACTACTGGGACGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_4375#0 CCATCTCCCTGCAGCTACGTACTGTACTTGTTAGCAATCAATCCCATCAAATCATCCACC GCTCGCTGCTGCTGCTACGTACTATACAGCTTGATTAATTAGGTTTTACGACGACGGCAA CGGGGACAGATATGACGGCCGCCCTGCAAGCGCTGCTCGACCCGACGGCGCTGTCCTTGG GCCTGCCCACGCCGGCGATCAACAAGGAGGAGTACCTCGCCATCTGCCTCGCCGCGCTCG CCTGCACGCGGGCGGGGAAGGCCCTGGTGGGAGTGGGAGGCCAGCAGCAGGTGCAGGCCT GCAATAAGTGGCTGTGCCCAGCGCCCGCGGCGCCTGAGGAGCTCCGCTTCCGGTGCACCG TCTGCGGGAAGGCCTTCGCCTCGTACCAGGCGCTCGGCGGACACAAGTCCAGCCACCGGA AGCCGCCTTCCCCGGGAGACCACTACGGCGCCGCCGCCGCGGCGCAGCAGCTGGCATCCG CTGGTGACTCGAAGGAGGACTCGGCGTCGTCAGCGGCCGGGAGCACTGGGCCGCACCGGT GCACCATCTGCAGGAGGAGCTTCGCGACGGGGCAGGCGCTCGGCGGCCACAAGCGCTGCC ACTACTGGGACGGCACGTCGGTGTCCGTCTCCGTCTCGGCGTCCGCGTCGGCCGCCTCGT CGGCCGTCAGGAACTTCGACCTCAACCTGATGCCGCTGCCGGAGAGCACAGCCGCCGCCG GGATCAAGAGGTGGGCGGAGGAGGAGGAGGTGCAGAGTCCACTGCCGGTCAAGAAGCTCA GGATGTCCAACTAATTCATCATACGCCATCTTGTAAAAACAAGAGATCTGCCCATTGATC GACTCTATTGAACAGAGTCTATTCTTTGATTTTTTTTTTCTTTTCAACTCACTAATTGTT TGGTTTCTGTCATCGAGTATGCAACAAGCTAAGCTGGTGACCATGGATCTTCCAAGATTG ATTGTCGCCAAGGGACATATATGGTTCTAGGAGTGTTGATTCATTTGATTCTTTGTATAT TTGTTCAATCTAAAAATTAATGTACTCAATCTGCTCAATATATATAGACGCTATATTA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)