cluster # 438

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Oryza sativa
cluster # 438 cluster # 438 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_438#0 length = 1498 sequences # 1

consensus_438#1 length = 390 sequences # 1

consensusID : consensus_438#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1498
fasta sequence

                              [TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCTCCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGCTCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACTTCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTCGCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGCGCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTGAGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAAGAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGGCGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGCCGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGCTGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCCTGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGGCGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACCTCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCAGCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCACGTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTCTTTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGTTCGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA]

[+] EMBL AK106618             [TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCTCCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGCTCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACTTCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTCGCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGCGCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTGAGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAAGAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGGCGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGCCGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGCTGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCCTGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGGCGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACCTCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCAGCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCACGTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTCTTTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGTTCGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA]




>consensus_438#0
TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCT
CCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGC
TCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACT
TCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTC
GCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGC
GCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTG
AGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAA
GAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGG
CGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGC
CGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGC
TGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCC
TGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGG
CGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACC
TCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCA
GCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACC
CCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCT
CCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTT
GTCATGAGATTGAAATAGTGTATTCGAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGC
TGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCC
TTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAA
AAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGA
AGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCAC
GTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTCT
TTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGTT
CGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA

consensusID : consensus_438#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [CGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCAAAAAAAAAAAAAAA]

[+] EMBL AU197761             [CGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAGAAGTTGTTTCAAAAAAAAAAAAAAA]




>consensus_438#1
CGACCCCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTC
GGCCTCCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAAC
GTTTTGTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGG
CTCGGCTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGC
TCTTCCTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGA
AAAAAAAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATA
AAAAGAAGTTGTTTCAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_438#0      TATCATATTTGGTATACTAGCCAAGTAAGTCTTCCCTCCTCCAGCTCGTCGCCTTCTTCT 60
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      CCAGCTTAATTTCTCCGATCGAAATGGCGTCCCCATCGGCGGCGGCGACGGCTAGGAAGC 120
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TCGGTAGTCATCTGCCGAGGCTGCGGGACATCATCGACCACGACGACGAGGACGATGACT 180
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TCGTCGAGGAGGAGGAAGAGGAGGAGGAGGAGTGGGAGGACATGAGCAAGCGGATGTCTC 240
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      GCTTGTCCGTCGAGGGCTCCGACGGCGGTGACGCCGACGACGAGGACGACGGGTACCTGC 300
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      GCGGCGAGGAGGAGGAGGAGGAGGAGGATGGGGACGAGGTGAGATCGGATGTCAACGGTG 360
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      AGTATGGGGACGGCGGCGGCGGCGGAGGCCAGTGGCATCCGTACGGCGACGACGACCCAA 420
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      GAAACCCGCAGGCCCCGTCGTCGGCGTCGCTCCCGGGCACGCCGGACCGCGGGGCGCCGG 480
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      CGCCGTCGCCGTGGATGTACTCGAAGGAGTACGCGAGCGAGACGGAGGCGGCGCGGTGGC 540
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      CGGGCGGCGACAAGCGGCGGATGCGCCACCGGCGGGAGCGGATGATGCGGGAGGTGTGGC 600
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TGGACCGGGCTTGGCAGATGCGGAAGCAGCGGCGGCAGATGCTGATGCAGGGCCAGGGCC 660
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TGGGCGCCGACGCGGTGACGGTGGTGGTGAGCGCCGCCGCCGCCGGCGGCGAGTCCCCGG 720
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      CGCGTGGCGTGGCGATGGACATGGAGGAGATGCGCGCGTGCAGGGACCTCGGCCTCGACC 780
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TCCCCTGCGACTGGACCGTGGAGATCCCCTGCTACGCGCTCTCCGGCGTCGACACCGCCA 840
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      GCAGCGGCGGCAACTCGCCGGCGTCCGGCAGCTGGCGCATCTCCAGCCCCGGTGACGACC 900
consensus_438#1      -------------------------------------------------------CGACC 5
                                                                            *****

consensus_438#0      CCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCT 960
consensus_438#1      CCAAGGACGTGAAGGCGAGGCTCAAGGTGTGGGCGCAGGCGGTGGCGCTCGCGTCGGCCT 65
                     ************************************************************

consensus_438#0      CCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTT 1020
consensus_438#1      CCCGGCTGGGTTCTTGATACATTTTTATCGATCGTCGTACGTGCCATCAACCAACGTTTT 125
                     ************************************************************

consensus_438#0      GTCATGAGATTGAAATAGTGTATTCGAAAAAAAAA-TTCTCCCCTCTTTCGTCGGCTCGG 1079
consensus_438#1      GTCATGAGATTGAAATAGTGTATTCGAAAAAAAAAATTCTCCCCTCTTTCGTCGGCTCGG 185
                     *********************************** ************************

consensus_438#0      CTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTC 1139
consensus_438#1      CTGTCACGTGTCAGTCCTCTTCGTCGAGCAATAAGTACATCGATCAGCGATCAGCTCTTC 245
                     ************************************************************

consensus_438#0      CTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAA 1199
consensus_438#1      CTTCAAGCGTGTGTGTTTCCACAGTACATAACTTGAAGTCCAGGAATATGTGTGAAAAAA 305
                     ************************************************************

consensus_438#0      AAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAG 1259
consensus_438#1      AAAAAGCATTAGCGGCGTGTGCAATCGCCAAAAAAAAATGGAAGAAAAAAATATAAAAAG 365
                     ************************************************************

consensus_438#0      AAGTTGTTTCCACAGAGTGGTTAGCTAGGTAGCTATAGCTGTGTAGATTTACAGGTGGCA 1319
consensus_438#1      AAGTTGTTTCAAAAAAAAAAAAAAA----------------------------------- 390
                     ********** * * *      *                                     

consensus_438#0      CGTATTGCTTGGTGACACGTGTTTTTCTTTCTTTCTTGTATTTTATTTTATTTTCTTTTC 1379
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TTTTGCCTCGGCCGGCCGGCAGGGGGTGTGGCCCACCGGGAAAGAGTAAGACAGGAGTGT 1439
consensus_438#1      ------------------------------------------------------------
                                                                                 

consensus_438#0      TCGTGCGTTCCATGATTACAGGAGTGCGGGTGAAGAAAACCTAAGAAAAATTAAAAGAA 1498
consensus_438#1      -----------------------------------------------------------