cluster # 4381

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Oryza sativa
cluster # 4381 cluster # 4381 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4381#0 length = 1122 sequences # 2

consensus_4381#1 length = 600 sequences # 1

consensusID : consensus_4381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1122
fasta sequence

                              [TTCTTTTTTTTAGACATGAACAATTTCACTTTCACCATGTGTGTATAGATACAGAATTAGATGGACCCCAAAACCATCAACCATACGAGATTACGAGTCCATCGAATTGTGGTGTGGATTATGAACAGTTAGCTTGATTAATCAAGCAATCAAGCTAGATCATGAGAGCCCATTATACATTCACAAAGTTATAACCAAACACCAAAACTCTTTGATTCTCCTCTCTAGTAATTCATTTCCTGCCCATTATACATACCCACTATCCAATGTTCAAAAATCGTTCAGACATGAACAATTTCACGTATAGATACATAATTTAGATGAACCCCAAAACCATACGATAAGAGTCCATCAAATTGTGGTGTGGATTACGAACAGCTATAGCTTGATTAATTAATCAAATCAAAGCTCAATTGATCAAGCAATGATCAGGAGAGGGTGATGAAGTGGCGGAGCGAGTCGACGAGGCTGGGGGGCCAGTGCTTGGTGTCCCTGACGTAGGCGAGGTCGGTGTAGTGCGGGTCCAGCAGCGTGGCGATGGCGAACTGGTTCTCGGCGAGCAGCGCCGCGTGCTTGTCGGCGTAGAGCGCCGCCGCCAGCGCCGCGTGGATCTCCGGGTAACCCCGCAGCGCCACCGACGCGTCCTCCATCTCCGCGATGGCGTCGTCGCGGTCGCCCACCTCGTACAGCACCAGCGCCCGCCCCACGCGGGCGTACCCCGACAGCGACAGGTCCCCGTACTCCGTCGCCACCGCCGTGAACGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCACCGCCTACCCGACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCTGGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGCGGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGACGAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGCGGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGAAGAGACGAC]

[+] EMBL CB666305             [TTCTTTTTTTTAGACATGAACAATTTCACTTTCACCATGTGTGTATAGATACAGAATTAGATGGACCCCAAAACCATCAACCATACGAGATTACGAGTCCATCGAATTGTGGTGTGGATTATGAACAGTTAGCTTGATTAATCAAGCAATCAAGCTAGATCATGAGAGCCCATTATACATTCACAAAGTTATAACCAAACACCAAAACTCTTTGATTCTCCTCTCTAGTAATTCATTTCCTGCCCATTATACATACCCACTATCCAATGTTCAAAAATCGTTCAGACATGAACAATTTCACGTATAGATACATAATTTAGATGAACCCCAAAACCATACGATAAGAGTCCATCAAATTGTGGTGTGGATTACGAACAGCTATAGCTTGATTAATTAATCAAATCAAAGCTCAATTGATCAAGCAATGATCAGGAGAGGGTGATGAAGTGGCGGAGCGAGTCGACGAGGCTGGGGGGCCAGTGCTTGGTGTCCCTGACGTAGGCGAGGTCGGTGTAGTGCGGGTCCAGCAGCGTGGCGATGGCGAACTGGTTCTCGGCGAGCAGCGCCGCGTGCTTGTCGGCGTAGAGCGCCGCCGCCAGCGCCGCGTGGATCTCCGGGTAACCCCGCAGCGCCACCGACGCGTCCTCCATCTCCGCGATGGCGTCGTCGCGGTCGCCCACCTCGTACAGCACCAGCGCCCGCCCCACGCGGGCGTACCCCGACAGCGACAGGTCCCCGTACTCCGTCGCCACCGCCGTGAACGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCG                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB666304             [                                                                                                                                                                                                                                                                                                                                                                                                     TTAATTAATCAAATCAAAGCTCAATTGATCAAGCAATGATCAGGAGAGGGTGATGAAGTGGCGGAGCGAGTCGACGAGGCTGGGGGGCCAGTGCTTGGTGTCCCTGACGTAGGCGAGGTCGGTGTAGTGCGGGTCCAGCAGCGTGGCGATGGCGAAATGGTTCTCGGCGAGCAGCGCCGCGTGCTTGTCGGCGTAGAGCGCCGCCGCCAGCGCCGCGTGGATCTCCGGGTAACCCCGCAGCGCCACCGACGCGTCCTCCATCTCCGCGATGGCGTCGTCGCGGTCGCCCACCTCGTACAGCACCAGCGCCCGCCCCACGCGGGCGTACCCCGACAGCGACAGGTCCCCGTACTCCGTCGCCACCGCCGTGAACGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCACCGCCTACCCGACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCTGGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGCGGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGACGAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGCGGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGAAGAGACGAC]




>consensus_4381#0
TTCTTTTTTTTAGACATGAACAATTTCACTTTCACCATGTGTGTATAGATACAGAATTAG
ATGGACCCCAAAACCATCAACCATACGAGATTACGAGTCCATCGAATTGTGGTGTGGATT
ATGAACAGTTAGCTTGATTAATCAAGCAATCAAGCTAGATCATGAGAGCCCATTATACAT
TCACAAAGTTATAACCAAACACCAAAACTCTTTGATTCTCCTCTCTAGTAATTCATTTCC
TGCCCATTATACATACCCACTATCCAATGTTCAAAAATCGTTCAGACATGAACAATTTCA
CGTATAGATACATAATTTAGATGAACCCCAAAACCATACGATAAGAGTCCATCAAATTGT
GGTGTGGATTACGAACAGCTATAGCTTGATTAATTAATCAAATCAAAGCTCAATTGATCA
AGCAATGATCAGGAGAGGGTGATGAAGTGGCGGAGCGAGTCGACGAGGCTGGGGGGCCAG
TGCTTGGTGTCCCTGACGTAGGCGAGGTCGGTGTAGTGCGGGTCCAGCAGCGTGGCGATG
GCGAACTGGTTCTCGGCGAGCAGCGCCGCGTGCTTGTCGGCGTAGAGCGCCGCCGCCAGC
GCCGCGTGGATCTCCGGGTAACCCCGCAGCGCCACCGACGCGTCCTCCATCTCCGCGATG
GCGTCGTCGCGGTCGCCCACCTCGTACAGCACCAGCGCCCGCCCCACGCGGGCGTACCCC
GACAGCGACAGGTCCCCGTACTCCGTCGCCACCGCCGTGAACGACGCCAGCGCCGCCGGG
AACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCACCGCCTACCCGACG
CGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCTGGTG
ACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGCGGCG
AGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGACGAAG
CGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGCGGCC
GAGCTCGCCGGCGTCACGGGCGGTTGCATGGGAAGAGACGAC

consensusID : consensus_4381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [CCCCCACACCGAGCCGCGCATTTGCGTTGCATGGACTGCGTTCACGTTTCTGGCGTCGTGAGGGGGTCGCGGGACGGGCGTTGCGCCCGTANTCTGTGTGAGGTGTGGGCGGGGCTGGTGGCGTTGGCATCGGTGACTCGCGCGGTGGTGGATGGTGGGGCCGTGGGTGTGTTTGTGGGGGTTCTTTCTTTCATGAGGTGGTCGCCGGACAGCGACAGGTCCCCGTACTCCGTCGCCGCCGCCGTGACCGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCCCCGCCTCCCCGACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCTGGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGCGGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGACGAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGCGGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGA]

[-] EMBL CA753892             [CCCCCACACCGAGCCGCGCATTTGCGTTGCATGGACTGCGTTCACGTTTCTGGCGTCGTGAGGGGGTCGCGGGACGGGCGTTGCGCCCGTANTCTGTGTGAGGTGTGGGCGGGGCTGGTGGCGTTGGCATCGGTGACTCGCGCGGTGGTGGATGGTGGGGCCGTGGGTGTGTTTGTGGGGGTTCTTTCTTTCATGAGGTGGTCGCCGGACAGCGACAGGTCCCCGTACTCCGTCGCCGCCGCCGTGACCGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCCCCGCCTCCCCGACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCTGGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGCGGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGACGAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGCGGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGA]




>consensus_4381#1
CCCCCACACCGAGCCGCGCATTTGCGTTGCATGGACTGCGTTCACGTTTCTGGCGTCGTG
AGGGGGTCGCGGGACGGGCGTTGCGCCCGTANTCTGTGTGAGGTGTGGGCGGGGCTGGTG
GCGTTGGCATCGGTGACTCGCGCGGTGGTGGATGGTGGGGCCGTGGGTGTGTTTGTGGGG
GTTCTTTCTTTCATGAGGTGGTCGCCGGACAGCGACAGGTCCCCGTACTCCGTCGCCGCC
GCCGTGACCGACGCCAGCGCCGCCGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGG
TCCAGCAGCCGCCCCGCCTCCCCGACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCC
GCCGCTGTCACCGGGTCGTAGCTGGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGG
GGCGCCGCGGCGGCGGCGGCGGCGGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGA
TGCCTCCTCGTCGGGGGCAAGACGAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGT
GGTGGGGGCGGGGGCGCGCCGGCGGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4381#0      TTCTTTTTTTTAGACATGAACAATTTCACTTTCACCATGTGTGTATAGATACAGAATTAG 60
consensus_4381#1      ------------------------------------------------------------
                                                                                  

consensus_4381#0      ATGGACCCCAAAACCATCAACCATACGAGATTACGAGTCCATCGAATTGTGGTGTGGATT 120
consensus_4381#1      ------------------------------------------------------------
                                                                                  

consensus_4381#0      ATGAACAGTTAGCTTGATTAATCAAGCAATCAAGCTAGATCATGAGAGCCCATTATACAT 180
consensus_4381#1      ------------------------------------------------------------
                                                                                  

consensus_4381#0      TCACAAAGTTATAACCAAACACCAAAACTCTTTGATTCTCCTCTCTAGTAATTCATTTCC 240
consensus_4381#1      ------------------------------------------------------------
                                                                                  

consensus_4381#0      TGCCCATTATACATACCCACTATCCAATGTTCAAAAATCGTTCAGACATGAACAATTTCA 300
consensus_4381#1      ------------------------------------------------------------
                                                                                  

consensus_4381#0      CGTATAGATACATAATTTAGATGAACCCCAAAACCATACGATAAGAGTCCATCAAATTGT 360
consensus_4381#1      ------------------------------------------------------------
                                                                                  

consensus_4381#0      GGTGTGGATTACGAACAGCTATAGCTTGATTAATTAATCAAATCAAAGCTCAATTGATCA 420
consensus_4381#1      ------------------------------------------------------------
                                                                                  

consensus_4381#0      AGCAATGATCAGGAGAGGGTGATGAAGTGGCGGAGCGAGTCGACGAGGCTGGGGGGCCAG 480
consensus_4381#1      ------------------------------------------------------------
                                                                                  

consensus_4381#0      TGCTTGGTGTCCCTGACGTAGGCGAGGTCGGTGTAGTGCGGGTCCAGCAGCGTGGCGATG 540
consensus_4381#1      -----------------------------CCCCCACACCGAGCCGCGCA--TTTGCGTTG 29
                                                        *   ** * *  ***   * *** **

consensus_4381#0      -GCGAACTGGTTCTCGGCGAGCAGCGCCGCGTGCTTGTCGGCGTA-GAGCGCCGCCGCCA 598
consensus_4381#1      CATGGACTGCGTTCACGTTTCTGGCGTCGTGAGGGGGTCGCGGGACGGGCGTTGC-GCCC 88
                         * ****  *    *      *** ** * *   ****  * * * ***  ** *** 

consensus_4381#0      GCGCCGCGTG-GATCTCCGGGTAACCCCGCAGCGCCACCGACGCGTCCTCCATCTCCGCG 657
consensus_4381#1      GTANTCTGTGTGAGGTGTGGGCGGGGCTG--GTGGCGTTG--GCATCGGTGACTCGCGCG 144
                      *      *** **  *  ***     * *  * * *   *  ** **    *    ****

consensus_4381#0      ATGGCGT-CGTCGCGGTCGCCCACCTCGTACAGCACCAGCGCCCGCCCCACGCGGGCGTA 716
consensus_4381#1      GTGGTGGATGGTGGGGCCGTGGGTGT-GTTTGTGGGGGTTCTTTCTTTCATGAGGTGGTC 203
                       *** *   *  * ** **      * **                   ** * **  ** 

consensus_4381#0      CCCCGACAGCGACAGGTCCCCGTACTCCGTCGCCACCGCCGTGAACGACGCCAGCGCCGC 776
consensus_4381#1      GCCGGACAGCGACAGGTCCCCGTACTCCGTCGCCGCCGCCGTGACCGACGCCAGCGCCGC 263
                       ** ****************************** ********* ***************

consensus_4381#0      CGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCACCGCCTACCC 836
consensus_4381#1      CGGGAACTCGCCGCGCGCCTGCAGGTCGCGCCCCAGGTCCAGCAGCCGCCCCGCCTCCCC 323
                      ************************************************* ****** ***

consensus_4381#0      GACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCT 896
consensus_4381#1      GACGCGCCGCGACACCGACGCGCTCGCCGCGCGCTCCGCCGCTGTCACCGGGTCGTAGCT 383
                      ************************************************************

consensus_4381#0      GGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGC 956
consensus_4381#1      GGTGACGGCGTCGTCGTCCTCGCTGCTCGCCGCGCGGGGCGCCGCGGCGGCGGCGGCGGC 443
                      ************************************************************

consensus_4381#0      GGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGAC 1016
consensus_4381#1      GGCGAGGAGCAGGGAGGAGGCGGACGACGCGAGCAGATGCCTCCTCGTCGGGGGCAAGAC 503
                      ************************************************************

consensus_4381#0      GAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGC 1076
consensus_4381#1      GAAGCGGCAGGAGGTGGAACAGGTGGTGGTGGGTGGTGGTGGGGGCGGGGGCGCGCCGGC 563
                      ************************************************************

consensus_4381#0      GGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGAAGAGACGAC 1122
consensus_4381#1      GGCCGAGCTCGCCGGCGTCACGGGCGGTTGCATGGGA--------- 600
                      *************************************