cluster # 4384

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Oryza sativa
cluster # 4384 cluster # 4384 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4384#0 length = 866 sequences # 2

consensus_4384#1 length = 509 sequences # 1

consensusID : consensus_4384#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 866
fasta sequence

                              [AAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGCAATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACTCTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTAACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGGTTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTTCCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTGGTGGCCGCGAGCCATGTCGACGTCGACGTCGGCGTCCTCGTCGTCGTCGTCCTCCGCGGCCTCCTCCGGCGGCACCAAGTAGGCCCCGGGCTGCGGTGGCGCGCGGCGGCGGGTCCGCGAGGGGAGGATGTTGTTGAGGTCGACCTCGGCCAGCGGGTCGTCGCAGAACCCGTCGTCGCTGTCGTCCCCGCCACCGCCGCCGCCGC-CTCCCCCACCTTCCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGGCGTCGGGGCGGGCGGACTTGGGTGGCGGGTCGAGCGGGGCGAGGTCGGTGGCCTCGGCGTCGGGCTTGCGCTTTGCCGGCGAGGGCGAGGGCGCGGGCGCGGGGTCGGTGGCGGGTGCCTCGTCGGTGGCCGCCATCGCGGAGGGG]

[+] EMBL CB661817             [AAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGCAATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACTCTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTAACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGGTTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTTCCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTGGTGGCCGCGAGCCATGTCGACGTCGACGTCGGCGTCCTCGTCGTCGTCGTCCTCCGCGGCCTCCTCCGGCGGCACCAAGTAGGCCCCGGGCTGCGGTGGCGCGCGGCGGCGGGTCCGCGAGGGGAGGATGTTGTTGAGGTCGACCTCGGCCAGCGGGTCGTCGCAGAACCCGTCGTCGCTGTCGTCCCCGCCACCGCCGCCGCCGC CTCCCCCACCTTCCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTG                                                                                                                                                                                                ]
[-] EMBL CB661816             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CACCGCAG AGCCGCNCTCCCCCACCTTCCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGGCGTCGGGGCGGGCGGACTTGGGTGGCGGGTCGAGCGGGGCGAGGTCGGTGGCCTCGGCGTCGGGCTTGCGCTTTGCCGGCGAGGGCGAGGGCGCGGGCGCGGGGTCGGTGGCGGGTGCCTCGTCGGTGGCCGCCATCGCGGAGGGG]




>consensus_4384#0
AAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGCAATGTATACAAAAGAGATGTTAG
CTGTTCAACCATGATCACAGCATACTCGTCGACAACTCTTTGAAATCACGAAAAAGTACT
AGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTAACGATGCTGAAAAACCATGGTGA
CAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGGTTATCCAAGACCGTCTCCCTACA
GGTAGTAATATCCTAGCACCGGCAACCACCATTTCTTCCCTAGCGAGACTGTTGAGCCGA
GAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTGGTGGCCGCGAGCCATGTCGACGT
CGACGTCGGCGTCCTCGTCGTCGTCGTCCTCCGCGGCCTCCTCCGGCGGCACCAAGTAGG
CCCCGGGCTGCGGTGGCGCGCGGCGGCGGGTCCGCGAGGGGAGGATGTTGTTGAGGTCGA
CCTCGGCCAGCGGGTCGTCGCAGAACCCGTCGTCGCTGTCGTCCCCGCCACCGCCGCCGC
CGCCTCCCCCACCTTCCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCTGC
TGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCT
TCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGG
CGTCGGGGCGGGCGGACTTGGGTGGCGGGTCGAGCGGGGCGAGGTCGGTGGCCTCGGCGT
CGGGCTTGCGCTTTGCCGGCGAGGGCGAGGGCGCGGGCGCGGGGTCGGTGGCGGGTGCCT
CGTCGGTGGCCGCCATCGCGGAGGGG

consensusID : consensus_4384#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [GTCAATGCAGGGTTAAATCAACTAAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGCAATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACTCTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTAACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGGTTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTTCCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTGGTGGCCGCGAGCCATGTCGACGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGG]

[-] EMBL CF323496             [GTCAATGCAGGGTTAAATCAACTAAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGCAATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACTCTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTAACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGGTTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTTCCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTGGTGGCCGCGAGCCATGTCGACGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGG]




>consensus_4384#1
GTCAATGCAGGGTTAAATCAACTAAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGC
AATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACT
CTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTA
ACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGG
TTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTT
CCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTG
GTGGCCGCGAGCCATGTCGACGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTC
CTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCT
GGCGGCCTCCTCGGCGGCGGCCTCGTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4384#0      -----------------------AAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGC 37
consensus_4384#1      GTCAATGCAGGGTTAAATCAACTAAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGC 60
                                             *************************************

consensus_4384#0      AATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACT 97
consensus_4384#1      AATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACT 120
                      ************************************************************

consensus_4384#0      CTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTA 157
consensus_4384#1      CTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTA 180
                      ************************************************************

consensus_4384#0      ACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGG 217
consensus_4384#1      ACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGG 240
                      ************************************************************

consensus_4384#0      TTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTT 277
consensus_4384#1      TTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTT 300
                      ************************************************************

consensus_4384#0      CCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTG 337
consensus_4384#1      CCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTG 360
                      ************************************************************

consensus_4384#0      GTGGCCGCGAGCCATGTCGACGTCGACGTCGGCGTCCTCGTCGTCGTCGTCCTCCGCGGC 397
consensus_4384#1      GTGGCCGCGAGCCATGTCGACGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTC 420
                      *************************  *  * * ** ***  * ** ** ***** *  *

consensus_4384#0      CTCCTCCGGCGGCACCAAGTAGGCCCCGGGCTGCGGTGGCGCGCGGCGGCGGGTCCGCGA 457
consensus_4384#1      CTCCTC-GTCCTCGTC--CTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGC 477
                      ****** * *  *  *   * * ** *   ** *     * *   *      * ***** 

consensus_4384#0      GGGGAGGATGTTGTTGAGGTCGACCTCGGCCAGCGGGTCGTCGCAGAACCCGTCGTCGCT 517
consensus_4384#1      CCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGG---------------------------- 509
                         *  *   *  * *  * ** ***** *                              

consensus_4384#0      GTCGTCCCCGCCACCGCCGCCGCCGCCTCCCCCACCTTCCTCGTCGTCGTCGTCGTCGTC 577
consensus_4384#1      ------------------------------------------------------------
                                                                                  

consensus_4384#0      GTCGTCGTCGTCGTCGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTC 637
consensus_4384#1      ------------------------------------------------------------
                                                                                  

consensus_4384#0      GTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGC 697
consensus_4384#1      ------------------------------------------------------------
                                                                                  

consensus_4384#0      CTCCTCGGCGGCGGCCTCGTCGGCGTCGGGGCGGGCGGACTTGGGTGGCGGGTCGAGCGG 757
consensus_4384#1      ------------------------------------------------------------
                                                                                  

consensus_4384#0      GGCGAGGTCGGTGGCCTCGGCGTCGGGCTTGCGCTTTGCCGGCGAGGGCGAGGGCGCGGG 817
consensus_4384#1      ------------------------------------------------------------
                                                                                  

consensus_4384#0      CGCGGGGTCGGTGGCGGGTGCCTCGTCGGTGGCCGCCATCGCGGAGGGG 866
consensus_4384#1      -------------------------------------------------