cluster # 4386

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Oryza sativa
cluster # 4386 cluster # 4386 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4386#0 length = 525 sequences # 2

consensus_4386#1 length = 317 sequences # 1

consensusID : consensus_4386#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 525
fasta sequence

                              [TTTTCTCGACTGGCCATGGGTAATGAGTTTCGATGTATTGGGCGTTTCCGTTTAAAAATATAAGCTTTTTCGTGCTTGCTTGCGAGCATTGAAATGGCCTAAATGAAATGAATATTAAGATAAATAAAAGAAAGAAAATAAACCATTGAGAAAGTTATTCATTCTTATATTAATTTCCTATACTTAACCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAA-TGATCTTTCGAATTGGTCAAGACTCTCCTGTTTATGGCCCCTTCTATATGGTTGTTGTTTCATTGAATTTGCTTCAGGCTCGCGATTCGACTTTAATCGTTATGGATTGGTACCAAACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAACAGCCGGTACGGTAACAATGAAAATGGCTCCTTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGTACTATTACAGGGGGAATGTTCAGTACAGATTCCTATAGTACTGTTCAGGG]

[+] EMBL CF323561             [TTTTCTCGACTGGCCATGGGTAATGAGTTTCGATGTATTGGGCGTTTCCGTTTAAAAATATAAGCTTTTTCGTGCTTGCTTGCGAGCATTGAAATGGCCTAAATGAAATGAATATTAAGATAAATAAAAGAAAGAAAATAAACCATTGAGAAAGTTATTCATTCTTATATTAATTTCCTATACTTAACCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAA TGATCTTTCGAATTGGTCAAGACTCTCCTGTTTATGGCCCCTTCTATATGGTTGTTGTTTCATTGAATTTGCTTCAGGCTCGCGATTCGACTTTAATCGTTATGGATTGGTACCAAACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAACAGCCGGTACGGTAACAATGAAAATGGCTCCTTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGTACTATTACAGGGGGAATGTTCAGTACAGATTCCTATAGTACTGTTCAGGG]
[-] EMBL BI795619             [TTTTCTCGACTGGCCATGGGTAATGAGTTTCGATGTATTGGGCGTTTCCGTTTAAAAATATAAGCTTTTTCGTGCTTGCTTGCGAGCA TGGAATGGCCTGAATGGAATGAATATTAAGATAAATAAAAGAAAGAAAATAAACCA TGAGAAAGTTATTCATTCTTATATTAATTTCCTATACTTAACCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAAGTGATCTTTCGAA TGGTCAAGACTCTCCTGTTTATGGCCCCTTCTATATGG TGTTGTTTCATTGAA TTGCTTCAGGCTCGCGATTCGACTTTGATCGTTATGGATTGGTACCAAACCAAGccc                                                                                                                                                                              ]




>consensus_4386#0
TTTTCTCGACTGGCCATGGGTAATGAGTTTCGATGTATTGGGCGTTTCCGTTTAAAAATA
TAAGCTTTTTCGTGCTTGCTTGCGAGCATTGAAATGGCCTAAATGAAATGAATATTAAGA
TAAATAAAAGAAAGAAAATAAACCATTGAGAAAGTTATTCATTCTTATATTAATTTCCTA
TACTTAACCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAATGATCTTTCGAATT
GGTCAAGACTCTCCTGTTTATGGCCCCTTCTATATGGTTGTTGTTTCATTGAATTTGCTT
CAGGCTCGCGATTCGACTTTAATCGTTATGGATTGGTACCAAACCAAGATCAAGTCCTAG
GCAAGCGGACCTAATTTTAACAGCCGGTACGGTAACAATGAAAATGGCTCCTTCTTTAGT
GAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGTACTAT
TACAGGGGGAATGTTCAGTACAGATTCCTATAGTACTGTTCAGGG

consensusID : consensus_4386#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [TTTTTCTCGACTGGGCCATGGGTACATGCAGTTTCGATGTATGGGCGTTTCCGTTTAAAAATCATCAAGCTTTTTCGTGCTTGCTTGCGAGCCTTGCAAATGGCTGACATGGCAATGCACATATTCAAGCATACACATAACACAGCACACAGCAAACATAACACCCATTGAGCACAAGTTCTTCCATTCTTATATTAATTTCCTCATACTTAACCCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAATGATCTTTCGCAATTGGTCAAGACTCTCCTGTTATGGCCCCTTCTCATATGGTTGTGTTCTCAT]

[-] EMBL BI797274             [TTTTTCTCGACTGGGCCATGGGTACATGCAGTTTCGATGTATGGGCGTTTCCGTTTAAAAATCATCAAGCTTTTTCGTGCTTGCTTGCGAGCCTTGCAAATGGCTGACATGGCAATGCACATATTCAAGCATACACATAACACAGCACACAGCAAACATAACACCCATTGAGCACAAGTTCTTCCATTCTTATATTAATTTCCTCATACTTAACCCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAATGATCTTTCGCAATTGGTCAAGACTCTCCTGTTATGGCCCCTTCTCATATGGTTGTGTTCTCAT]




>consensus_4386#1
TTTTTCTCGACTGGGCCATGGGTACATGCAGTTTCGATGTATGGGCGTTTCCGTTTAAAA
ATCATCAAGCTTTTTCGTGCTTGCTTGCGAGCCTTGCAAATGGCTGACATGGCAATGCAC
ATATTCAAGCATACACATAACACAGCACACAGCAAACATAACACCCATTGAGCACAAGTT
CTTCCATTCTTATATTAATTTCCTCATACTTAACCCAAACAACTTCCAATTCCGTTATTT
CAACTACACCAAATGATCTTTCGCAATTGGTCAAGACTCTCCTGTTATGGCCCCTTCTCA
TATGGTTGTGTTCTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4386#0      -TTTTCTCGACTGG-CCATGGGTA-ATG-AGTTTCGATGTATTGGGCGTTTCCGTTTAAA 56
consensus_4386#1      TTTTTCTCGACTGGGCCATGGGTACATGCAGTTTCGATGTAT-GGGCGTTTCCGTTTAAA 59
                       ************* ********* *** ************* *****************

consensus_4386#0      AATA--TAAGCTTTTTCGTGCTTGCTTGCGAGCATTG-AAATGGCCTAAATGA-AATGAA 112
consensus_4386#1      AATCATCAAGCTTTTTCGTGCTTGCTTGCGAGCCTTGCAAATGGCTGACATGGCAATGCA 119
                      ***    ************************** *** *******  * ***  **** *

consensus_4386#0      TAT---TAAG-ATAAATAAAAGAAAGAAAATA-----------AACCATTGAG---AAAG 154
consensus_4386#1      CATATTCAAGCATACACATAACACAGCACACAGCAAACATAACACCCATTGAGCACAAGT 179
                       **    *** *** * * ** * ** * * *           * ********   **  

consensus_4386#0      TTATTCATTCTTATATTAATTTCCT-ATACTTAACC-AAACAACTTCCAATTCCGTTATT 212
consensus_4386#1      TCTTCCATTCTTATATTAATTTCCTCATACTTAACCCAAACAACTTCCAATTCCGTTATT 239
                      *  * ******************** ********** ***********************

consensus_4386#0      TCAACTACACCAAATGATCTTTCG-AATTGGTCAAGACTCTCCTGTTTATGGCCCCTTCT 271
consensus_4386#1      TCAACTACACCAAATGATCTTTCGCAATTGGTCAAGACTCTCCTGTT-ATGGCCCCTTCT 298
                      ************************ ********************** ************

consensus_4386#0      -ATATGGTTGTTGTTTCATTGAATTTGCTTCAGGCTCGCGATTCGACTTTAATCGTTATG 330
consensus_4386#1      CATATGGTTGTGTTCTCAT----------------------------------------- 317
                       **********  * ****                                         

consensus_4386#0      GATTGGTACCAAACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAACAGCCGGTAC 390
consensus_4386#1      ------------------------------------------------------------
                                                                                  

consensus_4386#0      GGTAACAATGAAAATGGCTCCTTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAA 450
consensus_4386#1      ------------------------------------------------------------
                                                                                  

consensus_4386#0      ATACGTCATTGCTATGGGAGCTTGTACTATTACAGGGGGAATGTTCAGTACAGATTCCTA 510
consensus_4386#1      ------------------------------------------------------------
                                                                                  

consensus_4386#0      TAGTACTGTTCAGGG 525
consensus_4386#1      ---------------