cluster # 439

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Oryza sativa
cluster # 439 cluster # 439 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_439#0 length = 1065 sequences # 1

consensus_439#1 length = 568 sequences # 1

consensusID : consensus_439#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1065
fasta sequence

                              [TTTTGTTTTCTTTTTTTATTTAATTGATTCGATGAACTTTGTGCCATTAAAATTACTTCTTGAGCTCCGAAAATTCACGGAAAATTCCGGAGAGTATTTTAGGGCACAAAGAATATTGCAAAATATTCCCGGCCAATGATTTTTAAGGGAAAATTTTAATTCTCCCATTATTTCACTTGATTAAATTGATTTAACTTTTATTTAATTTCTAGAAAATGTATTATTAATTGATTTTTATTCCCGAACGAAAATCGGGGCGTTACAACGGCCATCACCACCACTACCCCGACGTTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGGTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATGTTCACCCCTCGCAGGGAGCTTCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACAACGTGTTGAACACACCAGTATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCATACATACGATGAGTACGGTTCGGCGTCGACGCATCACGGAGTGCCTGCTTACTCCCCTCGCACAGCATTCATTGAGGACTTCTTTTTCACTGATCCTCCCCAGGGGGAAGTAGGGATGGATTACTGGCACGCAGCACCTCAGGTCACACAGCCGACGCAGGAGACGGAGGCCGGTCAGGGGCCAGACGTGACACCACAGCAGGCAGCTAGAGATAGGCACCCCCCTGATAATTTGACATATCCCACTGAGCAGATTAGGCGTAGGAAGAAGGGAGGACCTAGCAAGCGTGCGAAGGGCACTGATCGTCCTTGACTTATCTATTTGTATTAAACTTTTAGTCATTTATGTTCTGTCCGTACTATTTGAGAAACACTTTACGATTAACTTAGTACTATCAGGACTATTTCATAAACTTCTTCGGATAATTACTCAGTAGCATACCCTTCGAATGAATC]

[+] EMBL AK059934             [TTTTGTTTTCTTTTTTTATTTAATTGATTCGATGAACTTTGTGCCATTAAAATTACTTCTTGAGCTCCGAAAATTCACGGAAAATTCCGGAGAGTATTTTAGGGCACAAAGAATATTGCAAAATATTCCCGGCCAATGATTTTTAAGGGAAAATTTTAATTCTCCCATTATTTCACTTGATTAAATTGATTTAACTTTTATTTAATTTCTAGAAAATGTATTATTAATTGATTTTTATTCCCGAACGAAAATCGGGGCGTTACAACGGCCATCACCACCACTACCCCGACGTTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGGTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATGTTCACCCCTCGCAGGGAGCTTCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACAACGTGTTGAACACACCAGTATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCATACATACGATGAGTACGGTTCGGCGTCGACGCATCACGGAGTGCCTGCTTACTCCCCTCGCACAGCATTCATTGAGGACTTCTTTTTCACTGATCCTCCCCAGGGGGAAGTAGGGATGGATTACTGGCACGCAGCACCTCAGGTCACACAGCCGACGCAGGAGACGGAGGCCGGTCAGGGGCCAGACGTGACACCACAGCAGGCAGCTAGAGATAGGCACCCCCCTGATAATTTGACATATCCCACTGAGCAGATTAGGCGTAGGAAGAAGGGAGGACCTAGCAAGCGTGCGAAGGGCACTGATCGTCCTTGACTTATCTATTTGTATTAAACTTTTAGTCATTTATGTTCTGTCCGTACTATTTGAGAAACACTTTACGATTAACTTAGTACTATCAGGACTATTTCATAAACTTCTTCGGATAATTACTCAGTAGCATACCCTTCGAATGAATC]




>consensus_439#0
TTTTGTTTTCTTTTTTTATTTAATTGATTCGATGAACTTTGTGCCATTAAAATTACTTCT
TGAGCTCCGAAAATTCACGGAAAATTCCGGAGAGTATTTTAGGGCACAAAGAATATTGCA
AAATATTCCCGGCCAATGATTTTTAAGGGAAAATTTTAATTCTCCCATTATTTCACTTGA
TTAAATTGATTTAACTTTTATTTAATTTCTAGAAAATGTATTATTAATTGATTTTTATTC
CCGAACGAAAATCGGGGCGTTACAACGGCCATCACCACCACTACCCCGACGTTCCAGCGT
GGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGG
TCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAGG
GGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATGT
TCACCCCTCGCAGGGAGCTTCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACAA
CGTGTTGAACACACCAGTATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCCA
CACACAGCATACATACGATGAGTACGGTTCGGCGTCGACGCATCACGGAGTGCCTGCTTA
CTCCCCTCGCACAGCATTCATTGAGGACTTCTTTTTCACTGATCCTCCCCAGGGGGAAGT
AGGGATGGATTACTGGCACGCAGCACCTCAGGTCACACAGCCGACGCAGGAGACGGAGGC
CGGTCAGGGGCCAGACGTGACACCACAGCAGGCAGCTAGAGATAGGCACCCCCCTGATAA
TTTGACATATCCCACTGAGCAGATTAGGCGTAGGAAGAAGGGAGGACCTAGCAAGCGTGC
GAAGGGCACTGATCGTCCTTGACTTATCTATTTGTATTAAACTTTTAGTCATTTATGTTC
TGTCCGTACTATTTGAGAAACACTTTACGATTAACTTAGTACTATCAGGACTATTTCATA
AACTTCTTCGGATAATTACTCAGTAGCATACCCTTCGAATGAATC

consensusID : consensus_439#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [TGGATCGTTTGACCACTACACACATGGAAGAGGCGGAATTTGTTGAGCACGTTCACGTGGAGTCCGACACCCTGCTGCAAAGACTAGAGGCGAGACCTCCAGTCGTCAGGTCTGACGACGTAGCGAGTGTCCTTCGCAACTTCCGTGCACGTGCTGCCGCACTACTACGTCGTGTCTCCTGTCGGAGCGCGGCAGATGTGGTGCAGACGTCAGGCCGACGGCCATCACCACCACTACCCCGACGTTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGGTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATGTTCACCCCTCGCAGGGAGCATCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACAACGTGTTGAACACACCAGCATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCACACATA]

[+] EMBL BP184434             [TGGATCGTTTGACCACTACACACATGGAAGAGGCGGAATTTGTTGAGCACGTTCACGTGGAGTCCGACACCCTGCTGCAAAGACTAGAGGCGAGACCTCCAGTCGTCAGGTCTGACGACGTAGCGAGTGTCCTTCGCAACTTCCGTGCACGTGCTGCCGCACTACTACGTCGTGTCTCCTGTCGGAGCGCGGCAGATGTGGTGCAGACGTCAGGCCGACGGCCATCACCACCACTACCCCGACGTTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACGGTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATGTTCACCCCTCGCAGGGAGCATCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACAACGTGTTGAACACACCAGCATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCACACATA]




>consensus_439#1
TGGATCGTTTGACCACTACACACATGGAAGAGGCGGAATTTGTTGAGCACGTTCACGTGG
AGTCCGACACCCTGCTGCAAAGACTAGAGGCGAGACCTCCAGTCGTCAGGTCTGACGACG
TAGCGAGTGTCCTTCGCAACTTCCGTGCACGTGCTGCCGCACTACTACGTCGTGTCTCCT
GTCGGAGCGCGGCAGATGTGGTGCAGACGTCAGGCCGACGGCCATCACCACCACTACCCC
GACGTTCCAGCGTGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCC
ACACATCTCACGGTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGT
CAGCCGGATCAGGGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAA
CTCCGCCTTATGTTCACCCCTCGCAGGGAGCATCTGGGTCGGCACACTTCCCTTACATGC
CAACGGGGGACAACGTGTTGAACACACCAGCATGGGGACTTCATATCACTCCGCGTGCGC
CAGAGCAGGGCCACACACAGCACACATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_439#0      TTTTGTTTTCTTTTTTTATTTAATTGATTCGATGAACTTTGTGC-CATTAAAATTACTTC 59
consensus_439#1      -----------------------TGGATCGTTTGACCACTACACACATGGAAGAGGCGGA 37
                                            * ***    *** *  *   * ***  **    *   

consensus_439#0      TTGAGCTCCGAAAATTCACGGAAAATTCCGGAGAGTATTTTAGGGCACAAAGAATATTGC 119
consensus_439#1      ATTTGTTGAGCACGTTCACGTGGAGTCC-----GACACCCT--GCTGCAAAGACTAGAG- 89
                      *  * *  * *  ******   * * *        *   *  *   ****** **  * 

consensus_439#0      AAAATATTCCCGGCCAATGATTTTTAAGGGAAAATTTTAATTCTCCCATTATTTCACTTG 179
consensus_439#1      GCGAGACCTCCAGTCG-TCAGGTCTGACGACGTAGCGAGTGTCCTTCGCAACTTC-CGTG 147
                        * *   ** * *  * *  * * * *    *       **   *   * *** * **

consensus_439#0      ATTAAATTGATTTAACTTTTATTTAATTTCTAGAAAATGTATTATTAATTGATTTTTATT 239
consensus_439#1      CACGTGCTG-CCGCACTACTACGTCGTGTCTC---------CTGTCGGAGCGCGGCAGAT 197
                            **     ***  **  *  * ***           * *              *

consensus_439#0      CCCGAACGAAAATCGGGGCGTTACAACGGCCATCACCACCACTACCCCGACGTTCCAGCG 299
consensus_439#1      GTGGTGCAGACGTCAGGCCG-----ACGGCCATCACCACCACTACCCCGACGTTCCAGCG 252
                        *  *  *  ** ** **     ***********************************

consensus_439#0      TGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACG 359
consensus_439#1      TGGATCGGAGTGGTCCATCCTCTTCACGTCGCGGGTACGAAGCGGCCCACACATCTCACG 312
                     ************************************************************

consensus_439#0      GTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAG 419
consensus_439#1      GTCGTCCTTCCTTTCAGCACACCCCAGCACCGGAGTACACCAGGGGGTCAGCCGGATCAG 372
                     ************************************************************

consensus_439#0      GGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATG 479
consensus_439#1      GGGTACCCACGTCGAGCACGGCACCACCACGTCCGCAGGTATTCCAAACTCCGCCTTATG 432
                     ************************************************************

consensus_439#0      TTCACCCCTCGCAGGGAGCTTCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACA 539
consensus_439#1      TTCACCCCTCGCAGGGAGCATCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACA 492
                     ******************* ****************************************

consensus_439#0      ACGTGTTGAACACACCAGTATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCC 599
consensus_439#1      ACGTGTTGAACACACCAGCATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCC 552
                     ****************** *****************************************

consensus_439#0      ACACACAGCATACATACGATGAGTACGGTTCGGCGTCGACGCATCACGGAGTGCCTGCTT 659
consensus_439#1      ACACACAGCACACATA-------------------------------------------- 568
                     ********** *****                                            

consensus_439#0      ACTCCCCTCGCACAGCATTCATTGAGGACTTCTTTTTCACTGATCCTCCCCAGGGGGAAG 719
consensus_439#1      ------------------------------------------------------------
                                                                                 

consensus_439#0      TAGGGATGGATTACTGGCACGCAGCACCTCAGGTCACACAGCCGACGCAGGAGACGGAGG 779
consensus_439#1      ------------------------------------------------------------
                                                                                 

consensus_439#0      CCGGTCAGGGGCCAGACGTGACACCACAGCAGGCAGCTAGAGATAGGCACCCCCCTGATA 839
consensus_439#1      ------------------------------------------------------------
                                                                                 

consensus_439#0      ATTTGACATATCCCACTGAGCAGATTAGGCGTAGGAAGAAGGGAGGACCTAGCAAGCGTG 899
consensus_439#1      ------------------------------------------------------------
                                                                                 

consensus_439#0      CGAAGGGCACTGATCGTCCTTGACTTATCTATTTGTATTAAACTTTTAGTCATTTATGTT 959
consensus_439#1      ------------------------------------------------------------
                                                                                 

consensus_439#0      CTGTCCGTACTATTTGAGAAACACTTTACGATTAACTTAGTACTATCAGGACTATTTCAT 1019
consensus_439#1      ------------------------------------------------------------
                                                                                 

consensus_439#0      AAACTTCTTCGGATAATTACTCAGTAGCATACCCTTCGAATGAATC 1065
consensus_439#1      ----------------------------------------------