These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4392#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1363 fasta sequence [GAGGAGAAGAAACTTACGAGGACTCCTCCTCCGCCCGAGCGAGCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGCCGACGCCGACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGGGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGACGTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGACAATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGGGTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGATTCGGCGTGTGAATTGGAGTTCTTGAAGTTAATTAGACGGCTTGAATTACTGGATTGCTGCAATGTACATATAGGATGGCGAGATACTGAGAGTGGGAAGAAAAAAAATGTTTGTTTGGTTCATCTGAGATTATGATAACTTCAGAATTCAGATCCTACTTCAGTAAGTACTTCTTGTGCTATGTTCGTCACTTGAAATCAAGTCTTGATGATTGCATTTGTCCCCCATTTTATCTGTGAAACCAAGCACTGTGACCCATTTTTTTTTTTCATGATGCAATCTTTGAGTCCCACTTAACATTACAAGATTGGAATCCCTTTTTCTCTGAGAAAGTTGTAACGTCTGCAGCAAATTTATAGACTGATTTTGCAATTGTTCGGAGTCTTGATGATGCTGCGTCGATCCCATCTGGAGAAAAAGAGCCCCAGAAATTATTCGTGACTGATTGCATTTGTGGTAGCCTACTTGGTAGGTGGATGTATTGGCGTGGAAGTTGGCTTGCCACATTTGTTCAGACTTCATAACCCAATGCTACACAGTCATCGACCTACTAGCAGGAGTATGTGCATGCCCCTTCTGCAGAATCCAGCTCGAGAAGCAGCTGATGGGAATTCGGCTTCTGAATTCTAGGTTCATTTTCTAGATTGTATCTGTAGCTTCTTAGAATCTAGCTGCACTAATTGCCTGATTAGAGAAGCTTTTGATTATGAAAGAATTTGCTTCTACCAGAAGCTCTCCAAACAGGCACAAAAGCAGACAAGCAGTTGGTTGCATAGTAATTTTTGTTTTTCAGTTTATTTTTGGCTTCTACTTAATACTGCTGTACTACCTTCATTTTAAAATATAGCTATTTC] [+] EMBL AK064081 [GAGGAGAAGAAACTTACGAGGACTCCTCCTCCGCCCGAGCGAGCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGCCGACGCCGACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGGGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGACGTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGACAATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGGGTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGATTCGGCGTGTGAATTGGAGTTCTTGAAGTTAATTAGACGGCTTGAATTACTGGATTGCTGCAATGTACATATAGGATGGCGAGATACTGAGAGTGGGAAGAAAAAAAATGTTTGTTTGGTTCATCTGAGATTATGATAACTTCAGAATTCAGATCCTACTTCAGTAAGTACTTCTTGTGCTATGTTCGTCACTTGAAATCAAGTCTTGATGATTGCATTTGTCCCCCATTTTATCTGTGAAACCAAGCACTGTGACCCATTTTTTTTTTTCATGATGCAATCTTTGAGTCCCACTTAACATTACAAGATTGGAATCCCTTTTTCTCTGAGAAAGTTGTAACGTCTGCAGCAAATTTATAGACTGATTTTGCAATTGTTCGGAGTCTTGATGATGCTGCGTCGATCCCATCTGGAGAAAAAGAGCCCCAGAAATTATTCGTGACTGATTGCATTTGTGGTAGCCTACTTGGTAGGTGGATGTATTGGCGTGGAAGTTGGCTTGCCACATTTGTTCAGACTTCATAACCCAATGCTACACAGTCATCGACCTACTAGCAGGAGTATGTGCATGCCCCTTCTGCAGAATCCAGCTCGAGAAGCAGCTGATGGGAATTCGGCTTCTGAATTCTAGGTTCATTTTCTAGATTGTATCTGTAGCTTCTTAGAATCTAGCTGCACTAATTGCCTGATTAGAGAAGCTTTTGATTATGAAAGAATTTGCTTCTACCAGAAGCTCTCCAAACAGGCACAAAAGCAGACAAGCAGTTGGTTGCATAGTAATTTTTGTTTTTCAGTTTATTTTTGGCTTCTACTTAATACTGCTGTACTACCTTCATTTTAAAATATAGCTATTTC] consensusID : consensus_4392#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 708 fasta sequence [CCGCCGCAGGACCTCGCCGGCGGCGAGCAGCGGCAGCACCACCCGCTCCTCGCGGCCGCCGCCGCCGCCTCCCTCCTCGCCTTCCTCTATCTCCCGCGGCCGCTCCTCCCGCTCCTCCTCTCCCCCGCCTCCCTCTCCTCCCTCCTCGTCCTCCTCTCCCTCCTCCGCCTCGGCTCCCCGCCGCCTCCCCCCGCGGAGGCCACCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCGAGCGAGCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGC-CGACGCCGACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGACGTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGACAATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGGGTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGAT] [+] EMBL AK105369 [CCGCCGCAGGACCTCGCCGGCGGCGAGCAGCGGCAGCACCACCCGCTCCTCGCGGCCGCCGCCGCCGCCTCCCTCCTCGCCTTCCTCTATCTCCCGCGGCCGCTCCTCCCGCTCCTCCTCTCCCCCGCCTCCCTCTCCTCCCTCCTCGTCCTCCTCTCCCTCCTCCGCCTCGGCTCCCCGCCGCCTCCCCCCGCGGAGGCCACCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCGAGCGAGCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGC CGACGCCGACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGACGTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTCATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGACAATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGGGTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGAT] [+] EMBL AU033313 [ CCTCCTCCTCCGCCCGAGCAAGCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGG GCNCGACGCCGACGCCGCCCGAGCTCCCGAGCGTNTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCGAAAGGGCGCGCGCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAGATGGGCCTCACGTGGACCTCCGACTCCNACTCGGACAGCTACAGCGGCA NAACGACGACGT GACGACTACCGCNACGGCGACG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4392#0 ------------------------------------------------------------ consensus_4392#1 CCGCCGCAGGACCTCGCCGGCGGCGAGCAGCGGCAGCACCACCCGCTCCTCGCGGCCGCC 60 consensus_4392#0 ------------------------------------------------------------ consensus_4392#1 GCCGCCGCCTCCCTCCTCGCCTTCCTCTATCTCCCGCGGCCGCTCCTCCCGCTCCTCCTC 120 consensus_4392#0 ------------------------------------------------------------ consensus_4392#1 TCCCCCGCCTCCCTCTCCTCCCTCCTCGTCCTCCTCTCCCTCCTCCGCCTCGGCTCCCCG 180 consensus_4392#0 ------------GAGGAGAAGAAACTTACGAGGACTCCTCCTCC------GCCCGAGCGA 42 consensus_4392#1 CCGCCTCCCCCCGCGGAGGCCACCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCCGAGCGA 240 * **** * * * * ********** ********** consensus_4392#0 GCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGCCGACGCCG 102 consensus_4392#1 GCCGTCCCGGAGGCCGCCGATACTCCTCCTCCCCCACCGCCGCCGACGGCGCCGACGCCG 300 ************************************************************ consensus_4392#0 ACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCG 162 consensus_4392#1 ACGCCGCCCGAGCTCCCGAGCGTGTTCGTGGAGACGGAGTTCGCGTCGTCGTGGGCGGCG 360 ************************************************************ consensus_4392#0 AAAGGGCGCGCGCTGGGGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAG 222 consensus_4392#1 AAAGGGCGCGCGCTGGAGGTGATCCACGAGGAGTTCGAGGCGGAGTGGGGGCCGGAGGAG 420 **************** ******************************************* consensus_4392#0 ATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGAC 282 consensus_4392#1 ATGGGCCTCACGTGGACCTCCGACTCCGACTCGGACAGCTACAGCGGCAGCGACGACGAC 480 ************************************************************ consensus_4392#0 GTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTC 342 consensus_4392#1 GTCGACGACTACCGCGACGGCGACGGGATGATCGAGATCGAGCTGGAGGAGGACAACCTC 540 ************************************************************ consensus_4392#0 ATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGAC 402 consensus_4392#1 ATCGAGATCGACATCTCCAAGTGCCGGTGATGATGGATTGCTTACCTATTTTGCCCGGAC 600 ************************************************************ consensus_4392#0 AATCTTATTATCAGGTCTTCTTCTCTTTTTTTTT-CCTTGGGGATTTCTTGGTCCTTTGG 461 consensus_4392#1 AATCTTATTATCAGGTCTTCTTCTCTTTTTTTTTTCCTTGGGGATTTCTTGGTCCTTTGG 660 ********************************** ************************* consensus_4392#0 GTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGATTCGGCGTGTGAA 521 consensus_4392#1 GTTTGGTAATTTGATTTCTGACAAACAAATTAAAAAAAGTGTGCTGAT------------ 708 ************************************************ consensus_4392#0 TTGGAGTTCTTGAAGTTAATTAGACGGCTTGAATTACTGGATTGCTGCAATGTACATATA 581 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 GGATGGCGAGATACTGAGAGTGGGAAGAAAAAAAATGTTTGTTTGGTTCATCTGAGATTA 641 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 TGATAACTTCAGAATTCAGATCCTACTTCAGTAAGTACTTCTTGTGCTATGTTCGTCACT 701 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 TGAAATCAAGTCTTGATGATTGCATTTGTCCCCCATTTTATCTGTGAAACCAAGCACTGT 761 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 GACCCATTTTTTTTTTTCATGATGCAATCTTTGAGTCCCACTTAACATTACAAGATTGGA 821 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 ATCCCTTTTTCTCTGAGAAAGTTGTAACGTCTGCAGCAAATTTATAGACTGATTTTGCAA 881 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 TTGTTCGGAGTCTTGATGATGCTGCGTCGATCCCATCTGGAGAAAAAGAGCCCCAGAAAT 941 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 TATTCGTGACTGATTGCATTTGTGGTAGCCTACTTGGTAGGTGGATGTATTGGCGTGGAA 1001 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 GTTGGCTTGCCACATTTGTTCAGACTTCATAACCCAATGCTACACAGTCATCGACCTACT 1061 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 AGCAGGAGTATGTGCATGCCCCTTCTGCAGAATCCAGCTCGAGAAGCAGCTGATGGGAAT 1121 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 TCGGCTTCTGAATTCTAGGTTCATTTTCTAGATTGTATCTGTAGCTTCTTAGAATCTAGC 1181 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 TGCACTAATTGCCTGATTAGAGAAGCTTTTGATTATGAAAGAATTTGCTTCTACCAGAAG 1241 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 CTCTCCAAACAGGCACAAAAGCAGACAAGCAGTTGGTTGCATAGTAATTTTTGTTTTTCA 1301 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 GTTTATTTTTGGCTTCTACTTAATACTGCTGTACTACCTTCATTTTAAAATATAGCTATT 1361 consensus_4392#1 ------------------------------------------------------------ consensus_4392#0 TC 1363 consensus_4392#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||