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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[CGGGCAAAGGAGGAGGGCACATCCCAAGGTTTGGAGATTGGAAGAGCAGTGATGGTGGCACCCCTTACACCGTCTTCTTTGACGATGCCCGCAAGAGGAAGAATGCAGGCCATAGAACACCTCCTCACGGAGCTGGTTCTTCCACTCCCCAAAGAAACAAGGATCCCGCATCTCGTCCTCGCAGCCAAAGCGCGGTCGGGCATGGTGGTGGGTCTGTGCCTGCTTGGGGCCAATGGAATGAGGGCAATGCTGGTGGTGGTGGGGCCCAGCAGTACACGCTTATGTTCGACCAGATTAGGGATGAGAGGAGAGGCAGTGCTCCTTCAACGCCTACCGTCGAGCAACTCCAGCGTGCCACTCCAACTCGGTACAATCAGCACAATCAGCATGCAAATATGCGCAAGAGATTCACATGTTTCGGACTGTGCTTGAAGTAGAGGAATCATCATGGATGGATCAAGGAAATTGTGTATTAATGTCAATGGATACTGCTTTTGTTGTGCATGTATGGAGTTATTGCTATGAGTTTTCCATCAATAGTCAAGATTGTACGTATAAAGGATTTTGATCACGTAAAATGATGA]
[+] EMBL AK062443 [CGGGCAAAGGAGGAGGGCACATCCCAAGGTTTGGAGATTGGAAGAGCAGTGATGGTGGCACCCCTTACACCGTCTTCTTTGACGATGCCCGCAAGAGGAAGAATGCAGGCCATAGAACACCTCCTCACGGAGCTGGTTCTTCCACTCCCCAAAGAAACAAGGATCCCGCATCTCGTCCTCGCAGCCAAAGCGCGGTCGGGCATGGTGGTGGGTCTGTGCCTGCTTGGGGCCAATGGAATGAGGGCAATGCTGGTGGTGGTGGGGCCCAGCAGTACACGCTTATGTTCGACCAGATTAGGGATGAGAGGAGAGGCAGTGCTCCTTCAACGCCTACCGTCGAGCAACTCCAGCGTGCCACTCCAACTCGGTACAATCAGCACAATCAGCATGCAAATATGCGCAAGAGATTCACATGTTTCGGACTGTGCTTGAAGTAGAGGAATCATCATGGATGGATCAAGGAAATTGTGTATTAATGTCAATGGATACTGCTTTTGTTGTGCATGTATGGAGTTATTGCTATGAGTTTTCCATCAATAGTCAAGATTGTACGTATAAAGGATTTTGATCACGTAAAATGATGA]
consensusID : consensus_4395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence
[TGCTGGTGGTGGTGGGCCCCAGCAGTACACGCTTATGTTCGACCAGATTAGGGATGAGAGGAGAGGCAGTGCTCCTTCAACGCCTACCGTCGAGCAACTCCAGCGTGCCACTCCAACTCGGTACAATCAGCACAATCAGCATGCAAATATGCGCAAGAGATTCACATNTTTCGGACTGTGCTTGAAGTAGAGGAATCATCATGGATGGATCAAGGAAATTGTGTATTAATGTCAATGGATACTGCTTTTGTTGTGCATGTATGGAGTTATTGCTATGAGTTTTCCATCAATAAANAAAAAAN]
[+] EMBL AU101882 [TGCTGGTGGTGGTGGGCCCCAGCAGTACACGCTTATGTTCGACCAGATTAGGGATGAGAGGAGAGGCAGTGCTCCTTCAACGCCTACCGTCGAGCAACTCCAGCGTGCCACTCCAACTCGGTACAATCAGCACAATCAGCATGCAAATATGCGCAAGAGATTCACATNTTTCGGACTGTGCTTGAAGTAGAGGAATCATCATGGATGGATCAAGGAAATTGTGTATTAATGTCAATGGATACTGCTTTTGTTGTGCATGTATGGAGTTATTGCTATGAGTTTTCCATCAATAAANAAAAAAN]
consensusID : consensus_4395#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence
[TTCCCCAATCTGCACAAGTACATAATTCTTTCTTCATCTCCATTTAATCTTTCTTCTAGGCATAAAGAGTTTTTGCTATTGGNTCATGGCGGGCAAAGTAGGAGGGCACATNCCAAGGTTTGGAGATTGGAAGAGCAGTGATGGTGGCACCCCNTACACCGTCTTCTTTGACGATGCCCGCAAGAGGAAGAATGCAGGTGGTGTGGTGCCTCCTCCTTCTCTGGCTCGTGGCGACTCCGCACCTCCTCCTTNAGNCCATAGAACAC]
[+] EMBL OSS16563A [TTCCCCAATCTGCACAAGTACATAATTCTTTCTTCATCTCCATTTAATCTTTCTTCTAGGCATAAAGAGTTTTTGCTATTGGNTCATGGCGGGCAAAGTAGGAGGGCACATNCCAAGGTTTGGAGATTGGAAGAGCAGTGATGGTGGCACCCCNTACACCGTCTTCTTTGACGATGCCCGCAAGAGGAAGAATGCAGGTGGTGTGGTGCCTCCTCCTTCTCTGGCTCGTGGCGACTCCGCACCTCCTCCTTNAGNCCATAGAACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4395#0 CGGGCAAAGGAGGAGGGCACATCCCAAGGTTTGGAGATTGGAAGAGCAGTGATGGTGGCA 60
consensus_4395#1 ------------------------------------------------------------
consensus_4395#2 ------------------------------------------------------------
consensus_4395#0 CCCCTTACACCGTCTTCTTTGACGATGCCCGCAAGAGGAAGAATGCAGGCCATAGAACAC 120
consensus_4395#1 ------------------------------------------------------------
consensus_4395#2 ------------------------------------------------------------
consensus_4395#0 CTCCTCACGGAGCTGGTTCTTCCACTCCCCAAAGAAACAAGGATCCCGCATCTCGTCCTC 180
consensus_4395#1 ------------------------------------------------------------
consensus_4395#2 ------------------------------------------------------------
consensus_4395#0 GCAGCCAAAGCGCGGTCGGGCATGGTGGTGGGTCTGTGCCTGCTTGGGGCCAATGGAATG 240
consensus_4395#1 ------------------------------------------------------------
consensus_4395#2 ------------------------------------------------------------
consensus_4395#0 AGGGCAATGCTGGTGGTGGTGGGGCCCAGCAGTACACGCTTATGTTCGACCAGATTAGGG 300
consensus_4395#1 -------TGCTGGTGGTGGTGGGCCCCAGCAGTACACGCTTATGTTCGACCAGATTAGGG 53
consensus_4395#2 ---------------------------------------------TTCCCCAATCT--GC 13
* *** * *
consensus_4395#0 ATGAGAGGAGAGGCAGTGCTCCTTCAACGCCTA--CCGTCGAGCAACTCCAGCGTGCCAC 358
consensus_4395#1 ATGAGAGGAGAGGCAGTGCTCCTTCAACGCCTA--CCGTCGAGCAACTCCAGCGTGCCAC 111
consensus_4395#2 ACAAGTACATAATTCTTTCTTCATCTCCATTTAATCTTTCTTCTAGGCATAAAGAGTTTT 73
* ** * * * ** * ** * ** * ** * * * *
consensus_4395#0 TCCAACTCGGT-ACAATCAGCACAATCAGCATGCAAATAT---GCGCAAGAGATTCACAT 414
consensus_4395#1 TCCAACTCGGT-ACAATCAGCACAATCAGCATGCAAATAT---GCGCAAGAGATTCACAT 167
consensus_4395#2 TGCTATTGGNTCATGGCGGGCAAAGTAGGAGGGCACATNCCAAGGTTTGGAGATTGGAAG 133
* * * * * * * *** * * * *** ** * ****** *
consensus_4395#0 GTTTCGGACTGTGCTTGAAGTAGAGGAATCATCATGGATGGATCAAGGAAATTGTGTATT 474
consensus_4395#1 NTTTCGGACTGTGCTTGAAGTAGAGGAATCATCATGGATGGATCAAGGAAATTGTGTATT 227
consensus_4395#2 AGCAGTGATGGTGGCACCCCNTACACCGTCTTCTTTGACGATGCCCGCAA---GAGGAAG 190
** *** ** ** * ** * * * ** * * *
consensus_4395#0 AATGTCAATGG-ATACTGCTTTTGTTGTGCATGTATGGAGTTATTGCTATGAGTTTTCCA 533
consensus_4395#1 AATGTCAATGG-ATACTGCTTTTGTTGTGCATGTATGGAGTTATTGCTATGAGTTTTCCA 286
consensus_4395#2 AATGCAGGTGGTGTGGTGCCTCCTCCTTCTCTGGCTCGTGGCGACTCCGCACCTCCTCCT 250
**** *** * *** * * ** * * * * * ***
consensus_4395#0 TCAATAGTCAAGATTGTACGTATAAAGGATTTTGATCACGTAAAATGATGA 584
consensus_4395#1 TCAATAAANAAAAAAN----------------------------------- 302
consensus_4395#2 TNAGNCCATAGAACAC----------------------------------- 266
* * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||