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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1836 fasta sequence
[GACGACCTCCTCCCACACGCCTATCGTCATCCTCGCGATCGCCGCATTCATCCATCCACTCCCCCCGCACGCCGAAGGAATAACCTAGACCAGAGACGACCAAGGAGAGCGTCTCAGATGGTGGTGGTGGTGGTGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGAAGAAGGAGGAGGGGGAGGAGGAGGCGAGGGGAAGAGGAGGAGGAGGCGGCGTGGTGGGAGGGTGGGGGACGTGGGAGGAGCTGGTGCTGGGCAGCGCCGTCATCCGCCATGGGGGCGTTGCGTGGGGCGCCGTCGCCGCCGAGGTCCGGTCCCGCTCGCCGTGCGCCTTCTCGCCTGAGGAATGTGAAGCTAAATTTTCAGAGATACAAGCACGCTACTCTGCATGCGATGCTTGGTTTGAGGAGCTCCGTAAGCGGAGAGTTGCTGAATTAAGAAATGATCTGAAGAAGTCTGAAAATTTTATTGGATCCCTGCAGTCCATGATCAAAAGCCTCAGCAATAGCAAGCATGATGATGGCAACTCTGAATGTCACACTAGTCATACTGAGTCATGTTCAAATAATGAAAATACAGCTGATAACAATTCATCAAGCAAAGCATTGTCCAAAGATAGATCATCTGCTGCTAGTTTTACAGAGGAAGCAAGCAACAGTCAGAAATCTGAAAAGGTGCAACACTGCGATACTGATTCAATTCAAGTGAACAATACTTCAGCAGAGGTTTTGGTAAAA-CCCCTTGTTGAAAAAAAGGTTTGTGCTGAAGATGGTTTGCTTTGGGGCTCTAGAAAGAAAAGGGCCGTGAGGGATAGGAGGACTTTTCTGATGGCTGATAATAGTTGCAGAGCTGGCGAGAATACATCTACATCACACATACAGACAGATGGTTCCTCTGAAGGCTATGCAAAGAAGGGCTTGAAAACTCCAAATCTAGAATCTGGTGTGTCTGTCGTTGAGAAAGCAAAACCAAACTTGGCAGAGATTTTGAAAACTATATCTACTCAAAGTGACTGTTATATGTTGCAACGCCGACTTGATGTCCAGCGGAAGCGGACTAGATACAAGAAGATGATTCGCCGGCATATAGACTTCCGTATCCTTCATTCAAAGATCAAGAGTGGCGCAACATCTTCTACCAAGGAGCTTCTAAGAGACATTCTACTGTTTGTGAATAATGTCCTTGCCTTCTATCCAAAGGCTACGTTAGAGCACATGGCTGCAATTGAACTTCGAAATATTGCATTCAGAACAGTGCAAGAGAGCGCAAGCATGCCCTCTAAGAGTTGTGGAGTAACAGGAGCAGCAACTGCCCCTTTAGTGAAGAAGAACACCCGACCCGTGCAGCCTGGAAGTCATGGGCCTCATGATGCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAGTACTGTCAAGCAGGGTGAGGCCAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCAGAGAAATCCACCGGCCAAGAAGAGAGGCGTTGGGCGGCCTCCAAAGAATGGGCAGAAGCGTGCTGCTGCACAGCAAGATAGCCCTAACAAAGGCAGGAAGAGGACCCGACGCTGAACTTCGGCTCAAAATGCCCAAATATACAAAACTGTGTACAGACAGCGTATAGCTAGACCACATAGTGTCGTCTCTTTCAGTGTTTACTTGTTACCTGGCAAAGACTAGGTCGGAAATCAGAATGTTGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGATAGGAAAGAACATTTTTATAGGCAGAAACTATCAACTTAGATATATATAGTATATCTCT]
[+] EMBL AK101955 [GACGACCTCCTCCCACACGCCTATCGTCATCCTCGCGATCGCCGCATTCATCCATCCACTCCCCCCGCACGCCGAAGGAATAACCTAGACCAGAGACGACCAAGGAGAGCGTCTCAGATGGTGGTGGTGGTGGTGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGAAGAAGGAGGAGGGGGAGGAGGAGGCGAGGGGAAGAGGAGGAGGAGGCGGCGTGGTGGGAGGGTGGGGGACGTGGGAGGAGCTGGTGCTGGGCAGCGCCGTCATCCGCCATGGGGGCGTTGCGTGGGGCGCCGTCGCCGCCGAGGTCCGGTCCCGCTCGCCGTGCGCCTTCTCGCCTGAGGAATGTGAAGCTAAATTTTCAGAGATACAAGCACGCTACTCTGCATGCGATGCTTGGTTTGAGGAGCTCCGTAAGCGGAGAGTTGCTGAATTAAGAAATGATCTGAAGAAGTCTGAAAATTTTATTGGATCCCTGCAGTCCATGATCAAAAGCCTCAGCAATAGCAAGCATGATGATGGCAACTCTGAATGTCACACTAGTCATACTGAGTCATGTTCAAATAATGAAAATACAGCTGATAACAATTCATCAAGCAAAGCATTGTCCAAAGATAGATCATCTGCTGCTAGTTTTACAGAGGAAGCAAGCAACAGTCAGAAATCTGAAAAGGTGCAACACTGCGATACTGATTCAATTCAAGTGAACAATACTTCAGCAGAGGTTTTGGTAAAA CCCCTTGTTGAAAAAAAGGTTTGTGCTGAAGATGGTTTGCTTTGGGGCTCTAGAAAGAAAAGGGCCGTGAGGGATAGGAGGACTTTTCTGATGGCTGATAATAGTTGCAGAGCTGGCGAGAATACATCTACATCACACATACAGACAGATGGTTCCTCTGAAGGCTATGCAAAGAAGGGCTTGAAAACTCCAAATCTAGAATCTGGTGTGTCTGTCGTTGAGAAAGCAAAACCAAACTTGGCAGAGATTTTGAAAACTATATCTACTCAAAGTGACTGTTATATGTTGCAACGCCGACTTGATGTCCAGCGGAAGCGGACTAGATACAAGAAGATGATTCGCCGGCATATAGACTTCCGTATCCTTCATTCAAAGATCAAGAGTGGCGCAACATCTTCTACCAAGGAGCTTCTAAGAGACATTCTACTGTTTGTGAATAATGTCCTTGCCTTCTATCCAAAGGCTACGTTAGAGCACATGGCTGCAATTGAACTTCGAAATATTGCATTCAGAACAGTGCAAGAGAGCGCAAGCATGCCCTCTAAGAGTTGTGGAGTAACAGGAGCAGCAACTGCCCCTTTAGTGAAGAAGAACACCCGACCCGTGCAGCCTGGAAGTCATGGGCCTCATGATGCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAGTACTGTCAAGCAGGGTGAGGCCAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCAGAGAAATCCACCGGCCAAGAAGAGAGGCGTTGGGCGGCCTCCAAAGAATGGGCAGAAGCGTGCTGCTGCACAGCAAGATAGCCCTAACAAAGGCAGGAAGAGGACCCGACGCTGAACTTCGGCTCAAAATGCCCAAATATACAAAACTGTGTACAGACAGCGTATAGCTAGACCACATAGTGTCGTCTCTTTCAGTGTTTACTTGTTACCTGGCAAAGACTAGGTCGGAAATCAGAATGTTGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGATAGGAAAGAACATTTTTATAGGCAGAAACTATCAACTTAGATATATATAGTATATCTCT]
[+] EMBL AU062708 [ ATGCGATGCTTGGTTTGAGGAGCTCCGTAAGCGGAGAGTTGCTGAATTANGAAATGATCTGAAGAAGTCTGAAAATTTTATTGGATCCCTGCAGTCCATGATCAAAAGCCTCAGCAATAGCAAGCATGATGATGGCAACTCTGAATGTCACACTAGTCATACTGAGTCATGTTCAAATAATGAAAATACAGCTGATAACAATTCATCAAGCAAAGCATTGTCCAAAGATAGATCATCTGCTGCTAGTTTTACAGAGGAAGCAAGCAACAGTCAGAAATCTGAAAAGGTGCAACACTGCGATACTGATTCAATTCAAGTGAACAATACTTCAGCAGAGGCTTTGGTAAAACCCCCTTGTTGAAAAAAAGGTTTGTCCTtg ]
consensusID : consensus_4397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[NCCCCNCCCGNNTTTTNTTCCCCCCCTTGGCAATTGNTCCGGGCCCCCCCGGGTCNCGTTCNANNCTNATNCGATTCGCCCNGCTCATTGACTCGAATTTTTGATTNNGGACAGTTCCAGNGGGTTCCAGCCTTNCCCTCTAAGGGTTTTGGNGTTACAGGNGCCGCCACTGCCCCCTTNGTTGAAGGAGGACACCCGACCCTTCCAGCCCTGNAAGTCATGGNCCTCATGATGCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAAGTTACTGTCAAGCAGGGTGAGGCCCAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCCAGAGAAATCCACCGGCCAAGAAGAGAGGTGTTGGGCGGCCTCCAAAGAATGGGCCAGAAGCGTGCTGCTGCACAGCAAGATAGCCCTAACAAAGGNCAGGAAGAGGACCCGACGCTGAACTTCGGNCTCAAAATGCCCAAATATACAAAACTGTGTACAGCACAGCGTATAGCTAGNACCACATAGTGTCGTCTCTTTCAGTGTTTACTTGTTACCTGGNCAAAGACTAGGTCGGAAATCAGAATGTTGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGGATAGGAAAGAACATTTTTATAGGCCAGAAACTATNCTGTGCCGA]
[-] EMBL AI096150 [NCCCCNCCCGNNTTTTNTTCCCCCCCTTGGCAATTGNTCCGGGCCCCCCCGGGTCNCGTTCNANNCTNATNCGATTCGCCCNGCTCATTGACTCGAATTTTTGATTNNGGACAGTTCCAGNGGGTTCCAGCCTTNCCCTCTAAGGGTTTTGGNGTTACAGGNGCCGCCACTGCCCCCTTNGTTGAAGGAGGACACCCGACCCTTCCAGCCCTGNAAGTCATGGNCCTCATGATGCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAAGTTACTGTCAAGCAGGGTGAGGCCCAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCCAGAGAAATCCACCGGCCAAGAAGAGAGGTGTTGGGCGGCCTCCAAAGAATGGGCCAGAAGCGTGCTGCTGCACAGCAAGATAGCCCTAACAAAGGNCAGGAAGAGGACCCGACGCTGAACTTCGGNCTCAAAATGCCCAAATATACAAAACTGTGTACAGCACAGCGTATAGCTAGNACCACATAGTGTCGTCTCTTTCAGTGTTTACTTGTTACCTGGNCAAAGACTAGGTCGGAAATCAGAATGTTGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGGATAGGAAAGAACATTTTTATAGGCCAGAAACTATNCTGTGCCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4397#0 GACGACCTCCTCCCACACGCCTATCGTCATCCTCGCGATCGCCGCATTCATCCATCCACT 60
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 CCCCCCGCACGCCGAAGGAATAACCTAGACCAGAGACGACCAAGGAGAGCGTCTCAGATG 120
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 GTGGTGGTGGTGGTGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGAAGAAGGAG 180
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 GAGGGGGAGGAGGAGGCGAGGGGAAGAGGAGGAGGAGGCGGCGTGGTGGGAGGGTGGGGG 240
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 ACGTGGGAGGAGCTGGTGCTGGGCAGCGCCGTCATCCGCCATGGGGGCGTTGCGTGGGGC 300
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 GCCGTCGCCGCCGAGGTCCGGTCCCGCTCGCCGTGCGCCTTCTCGCCTGAGGAATGTGAA 360
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 GCTAAATTTTCAGAGATACAAGCACGCTACTCTGCATGCGATGCTTGGTTTGAGGAGCTC 420
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 CGTAAGCGGAGAGTTGCTGAATTAAGAAATGATCTGAAGAAGTCTGAAAATTTTATTGGA 480
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 TCCCTGCAGTCCATGATCAAAAGCCTCAGCAATAGCAAGCATGATGATGGCAACTCTGAA 540
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 TGTCACACTAGTCATACTGAGTCATGTTCAAATAATGAAAATACAGCTGATAACAATTCA 600
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 TCAAGCAAAGCATTGTCCAAAGATAGATCATCTGCTGCTAGTTTTACAGAGGAAGCAAGC 660
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 AACAGTCAGAAATCTGAAAAGGTGCAACACTGCGATACTGATTCAATTCAAGTGAACAAT 720
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 ACTTCAGCAGAGGTTTTGGTAAAACCCCTTGTTGAAAAAAAGGTTTGTGCTGAAGATGGT 780
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 TTGCTTTGGGGCTCTAGAAAGAAAAGGGCCGTGAGGGATAGGAGGACTTTTCTGATGGCT 840
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 GATAATAGTTGCAGAGCTGGCGAGAATACATCTACATCACACATACAGACAGATGGTTCC 900
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 TCTGAAGGCTATGCAAAGAAGGGCTTGAAAACTCCAAATCTAGAATCTGGTGTGTCTGTC 960
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 GTTGAGAAAGCAAAACCAAACTTGGCAGAGATTTTGAAAACTATATCTACTCAAAGTGAC 1020
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 TGTTATATGTTGCAACGCCGACTTGATGTCCAGCGGAAGCGGACTAGATACAAGAAGATG 1080
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 ATTCGCCGGCATATAGACTTCCGTATCCTTCATTCAAAGATCAAGAGTGGCGCAACATCT 1140
consensus_4397#1 ------------------------------------------------------------
consensus_4397#0 TCTACCAAGGAGCTTCTAAGAGACATTCTACTGTTTGTGAATAATGTCCTTGCCTTCTAT 1200
consensus_4397#1 -NCCCCNCCCGNNTTTTNTTCCCCCCCTTGGCAATTGNTCCGGGCCCCCCCGGGTCNCGT 59
** ** * * * *** ** * * *
consensus_4397#0 CCAAAGGCTACGTTAGAGCACATGGCTGCAATTGAACTTCGAAATATTGCATTCAGAACA 1260
consensus_4397#1 TCNANNCTNATNC-GATTCGCCCNGCT--CATTGA--CTCGAATTTTTG-ATTNNGGACA 113
* * * * * *** ***** ***** * *** *** * ***
consensus_4397#0 GTGCAAGAGAGCGCAAGCAT-GCCCTCTAAGAGTTGTGGAGTAACAGGAGCAGCAACTGC 1319
consensus_4397#1 GTTCCAGNGGGTTCCAGCCTTNCCCTCTAAGGGTTTTGGNGTTACAGGNGCCGCCACTGC 173
** * ** * * * *** * ********* *** *** ** ***** ** ** *****
consensus_4397#0 CCCTTTAGT-GAAGAAGAACACCCGACCCGTGCAGCC-TGGAAGTCATGGGCCTCATGAT 1377
consensus_4397#1 CCCCTTNGTTGAAGGAGGACACCCGACCCTTCCAGCCCTGNAAGTCATGGNCCTCATGAT 233
*** ** ** **** ** *********** * ***** ** ********* *********
consensus_4397#0 GCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAG--TACTGTCAAGCAGGGTGAGG 1435
consensus_4397#1 GCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAAGTTACTGTCAAGCAGGGTGAGG 293
************************************* ********************
consensus_4397#0 CC-AAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGC-AGAGAAA 1493
consensus_4397#1 CCCAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCCAGAGAAA 353
** ************************************************* *******
consensus_4397#0 TCCACCGGCCAAGAAGAGAGGCGTTGGGCGGCCTCCAAAGAATGGGC-AGAAGCGTGCTG 1552
consensus_4397#1 TCCACCGGCCAAGAAGAGAGGTGTTGGGCGGCCTCCAAAGAATGGGCCAGAAGCGTGCTG 413
********************* ************************* ************
consensus_4397#0 CTGCACAGCAAGATAGCCCTAACAAAGGC-AGGAAGAGGACCCGACGCTGAACTTCGGC- 1610
consensus_4397#1 CTGCACAGCAAGATAGCCCTAACAAAGGNCAGGAAGAGGACCCGACGCTGAACTTCGGNC 473
**************************** ****************************
consensus_4397#0 TCAAAATGCCCAAATATACAAAACTGTGTACAG-ACAGCGTATAGCTAGA-CCACATAGT 1668
consensus_4397#1 TCAAAATGCCCAAATATACAAAACTGTGTACAGCACAGCGTATAGCTAGNACCACATAGT 533
********************************* *************** *********
consensus_4397#0 GTCGTCTCTTTCAGTGTTTACTTGTTACCTGGC-AAAGACTAGGTCGGAAATCAGAATGT 1727
consensus_4397#1 GTCGTCTCTTTCAGTGTTTACTTGTTACCTGGNCAAAGACTAGGTCGGAAATCAGAATGT 593
******************************** **************************
consensus_4397#0 TGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAG-ATAGGAAAGA 1786
consensus_4397#1 TGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGGATAGGAAAGA 653
************************************************* **********
consensus_4397#0 ACATTTTTATAGGC-AGAAACTATCAACTTAGATATATATAGTATATCTCT 1836
consensus_4397#1 ACATTTTTATAGGCCAGAAACTATN--CTGTGCCGA--------------- 687
************** ********* ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||