cluster # 4398

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Oryza sativa
cluster # 4398 cluster # 4398 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4398#0 length = 337 sequences # 2

consensus_4398#1 length = 138 sequences # 1

consensusID : consensus_4398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 337
fasta sequence

                              [AAACCCAAGGTTTCACCAATAAGATTCTTGACATTGTTAGCCCCCACCAATGAACCCCAACTTTCTGGTGGAGCTATTCAGCAGAAAAGTGCACGCATCGGGGCAAATGACAACATGTAGAGCAACTTACCTCAGATGCTGTTTTCCTACCATGATGAGATTGCCTATACCCGTGACATTTCCTTCTACTACTTTGAGAAAGTTTTGTCGTCCAATATGGTGCTAGTATTTTACCATGGCATCTCTGGCTCAATCAACAACTGTTCAATTTGTCTACATCCGTGACATCTTCTTTGGCTAATGGCTACTGTGAGAGTTTTGTTGTCAAAAAAAAAAA]

[+] EMBL AU101890             [AAACCCAAGGTTTCACCAATAAGATTCTTGACATTGTTAGCCCCCACCAATGAACCCCAACTTTCTGGTGGAGCTATTCAGCAGAAAAGTGCACGCATCGGGGCAAATGACAACATGTAGAGCAACTTACCTCAGATGCTGTTTTCCTACCATGATGAGATTGCCTATACCCGTGACATTTCCTTCTACTACTTTGAGAAAGTTTTGTCGTCCAATATGGTGCTAGTATTTTACCATGGCATCTCTGGCTCAATCAACAACTGTTCAATTTGTCTACATCCGTGACATCTTCTTTGGCTAATGGCTACTGTGAGAGTTTTGTTGTCAAAAAAAAAAA]
[+] EMBL AK058951             [           TTCACCAATAAGATTCTTGACATTGTTAGCCCACAACAATGAACACCAACTTTCTGGTGGAGCTATTCAGCAGAAGAGTGCACGCATCGGGGCAAATGACAACATGTAGAGCAACTTACCTCAGATGCTGTTTTCCTACCATGATGAGATTGCCTATACCCGTGACATTTCCTTCTACTACTTTGAGAAAGTTTTGTCGTCCAATATGGTGCTAGTATTTTACCATGGCATCTCTGGCTCAATCAACAACTGTTCAATTTGTCTACATCCGTGACATCTTCTTTGGCTAATGGCTACTGTGAGAGT                    ]




>consensus_4398#0
AAACCCAAGGTTTCACCAATAAGATTCTTGACATTGTTAGCCCCCACCAATGAACCCCAA
CTTTCTGGTGGAGCTATTCAGCAGAAAAGTGCACGCATCGGGGCAAATGACAACATGTAG
AGCAACTTACCTCAGATGCTGTTTTCCTACCATGATGAGATTGCCTATACCCGTGACATT
TCCTTCTACTACTTTGAGAAAGTTTTGTCGTCCAATATGGTGCTAGTATTTTACCATGGC
ATCTCTGGCTCAATCAACAACTGTTCAATTTGTCTACATCCGTGACATCTTCTTTGGCTA
ATGGCTACTGTGAGAGTTTTGTTGTCAAAAAAAAAAA

consensusID : consensus_4398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [GAGCCAGAAAAGGAATTAGAGAAATTNATGGAAGGACAAGTTTTTCAACAGTTCACCAATAAGATTCTTGACATTGTTAGCCCACAACAATGAACACCAACTTTNTGGTGGAGCTATTCAGCAGAAGAGTGCACGCAT]

[+] EMBL OSC0111              [GAGCCAGAAAAGGAATTAGAGAAATTNATGGAAGGACAAGTTTTTCAACAGTTCACCAATAAGATTCTTGACATTGTTAGCCCACAACAATGAACACCAACTTTNTGGTGGAGCTATTCAGCAGAAGAGTGCACGCAT]




>consensus_4398#1
GAGCCAGAAAAGGAATTAGAGAAATTNATGGAAGGACAAGTTTTTCAACAGTTCACCAAT
AAGATTCTTGACATTGTTAGCCCACAACAATGAACACCAACTTTNTGGTGGAGCTATTCA
GCAGAAGAGTGCACGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4398#0      ----------------------------------------AAACCCAAGGTTTCACCAAT 20
consensus_4398#1      GAGCCAGAAAAGGAATTAGAGAAATTNATGGAAGGACAAGTTTTTCAACAGTTCACCAAT 60
                                                                   ***   *********

consensus_4398#0      AAGATTCTTGACATTGTTAGCCCCCACCAATGAACCCCAACTTTCTGGTGGAGCTATTCA 80
consensus_4398#1      AAGATTCTTGACATTGTTAGCCCACAACAATGAACACCAACTTTNTGGTGGAGCTATTCA 120
                      *********************** ** ******** ******** ***************

consensus_4398#0      GCAGAAAAGTGCACGCATCGGGGCAAATGACAACATGTAGAGCAACTTACCTCAGATGCT 140
consensus_4398#1      GCAGAAGAGTGCACGCAT------------------------------------------ 138
                      ****** ***********                                          

consensus_4398#0      GTTTTCCTACCATGATGAGATTGCCTATACCCGTGACATTTCCTTCTACTACTTTGAGAA 200
consensus_4398#1      ------------------------------------------------------------
                                                                                  

consensus_4398#0      AGTTTTGTCGTCCAATATGGTGCTAGTATTTTACCATGGCATCTCTGGCTCAATCAACAA 260
consensus_4398#1      ------------------------------------------------------------
                                                                                  

consensus_4398#0      CTGTTCAATTTGTCTACATCCGTGACATCTTCTTTGGCTAATGGCTACTGTGAGAGTTTT 320
consensus_4398#1      ------------------------------------------------------------
                                                                                  

consensus_4398#0      GTTGTCAAAAAAAAAAA 337
consensus_4398#1      -----------------