These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 337 fasta sequence [AAACCCAAGGTTTCACCAATAAGATTCTTGACATTGTTAGCCCCCACCAATGAACCCCAACTTTCTGGTGGAGCTATTCAGCAGAAAAGTGCACGCATCGGGGCAAATGACAACATGTAGAGCAACTTACCTCAGATGCTGTTTTCCTACCATGATGAGATTGCCTATACCCGTGACATTTCCTTCTACTACTTTGAGAAAGTTTTGTCGTCCAATATGGTGCTAGTATTTTACCATGGCATCTCTGGCTCAATCAACAACTGTTCAATTTGTCTACATCCGTGACATCTTCTTTGGCTAATGGCTACTGTGAGAGTTTTGTTGTCAAAAAAAAAAA] [+] EMBL AU101890 [AAACCCAAGGTTTCACCAATAAGATTCTTGACATTGTTAGCCCCCACCAATGAACCCCAACTTTCTGGTGGAGCTATTCAGCAGAAAAGTGCACGCATCGGGGCAAATGACAACATGTAGAGCAACTTACCTCAGATGCTGTTTTCCTACCATGATGAGATTGCCTATACCCGTGACATTTCCTTCTACTACTTTGAGAAAGTTTTGTCGTCCAATATGGTGCTAGTATTTTACCATGGCATCTCTGGCTCAATCAACAACTGTTCAATTTGTCTACATCCGTGACATCTTCTTTGGCTAATGGCTACTGTGAGAGTTTTGTTGTCAAAAAAAAAAA] [+] EMBL AK058951 [ TTCACCAATAAGATTCTTGACATTGTTAGCCCACAACAATGAACACCAACTTTCTGGTGGAGCTATTCAGCAGAAGAGTGCACGCATCGGGGCAAATGACAACATGTAGAGCAACTTACCTCAGATGCTGTTTTCCTACCATGATGAGATTGCCTATACCCGTGACATTTCCTTCTACTACTTTGAGAAAGTTTTGTCGTCCAATATGGTGCTAGTATTTTACCATGGCATCTCTGGCTCAATCAACAACTGTTCAATTTGTCTACATCCGTGACATCTTCTTTGGCTAATGGCTACTGTGAGAGT ] consensusID : consensus_4398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 138 fasta sequence [GAGCCAGAAAAGGAATTAGAGAAATTNATGGAAGGACAAGTTTTTCAACAGTTCACCAATAAGATTCTTGACATTGTTAGCCCACAACAATGAACACCAACTTTNTGGTGGAGCTATTCAGCAGAAGAGTGCACGCAT] [+] EMBL OSC0111 [GAGCCAGAAAAGGAATTAGAGAAATTNATGGAAGGACAAGTTTTTCAACAGTTCACCAATAAGATTCTTGACATTGTTAGCCCACAACAATGAACACCAACTTTNTGGTGGAGCTATTCAGCAGAAGAGTGCACGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4398#0 ----------------------------------------AAACCCAAGGTTTCACCAAT 20 consensus_4398#1 GAGCCAGAAAAGGAATTAGAGAAATTNATGGAAGGACAAGTTTTTCAACAGTTCACCAAT 60 *** ********* consensus_4398#0 AAGATTCTTGACATTGTTAGCCCCCACCAATGAACCCCAACTTTCTGGTGGAGCTATTCA 80 consensus_4398#1 AAGATTCTTGACATTGTTAGCCCACAACAATGAACACCAACTTTNTGGTGGAGCTATTCA 120 *********************** ** ******** ******** *************** consensus_4398#0 GCAGAAAAGTGCACGCATCGGGGCAAATGACAACATGTAGAGCAACTTACCTCAGATGCT 140 consensus_4398#1 GCAGAAGAGTGCACGCAT------------------------------------------ 138 ****** *********** consensus_4398#0 GTTTTCCTACCATGATGAGATTGCCTATACCCGTGACATTTCCTTCTACTACTTTGAGAA 200 consensus_4398#1 ------------------------------------------------------------ consensus_4398#0 AGTTTTGTCGTCCAATATGGTGCTAGTATTTTACCATGGCATCTCTGGCTCAATCAACAA 260 consensus_4398#1 ------------------------------------------------------------ consensus_4398#0 CTGTTCAATTTGTCTACATCCGTGACATCTTCTTTGGCTAATGGCTACTGTGAGAGTTTT 320 consensus_4398#1 ------------------------------------------------------------ consensus_4398#0 GTTGTCAAAAAAAAAAA 337 consensus_4398#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||