cluster # 4400

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Oryza sativa
cluster # 4400 cluster # 4400 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4400#0 length = 1422 sequences # 3
consensusID : consensus_4400#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1422
fasta sequence
                              [CTCCCGCGCCCGCGCATTGAACAACTCGTCGATCTGTCCGGCGAGGGTGAGTGCTTCTTGGCGTGTTCTTTTCGGCGACTTCTTGTTGGGGGGGGGGGGGGGGGGGGGTCGAATTCAGTTGCGTTGCGGTGGCTGAGCTTCTTTGCGTGTTCTTGTTTGGGTTTTGGGGTTGGGGGGTGCAGTGTTGGATCGTGAGTTTGGGGGTTTCTTGGCGGCGTGGTTTGAGATGGGCATCTTGTCGCTCATCACCGGGAAGGCCGGCGCGAGCGGGTTCGGCTCCGGGTCCACGGCGGAGCAGGTCACCGCCGGCGTCGACGCCACCGGCCTCACCGTCATCGTCACAGGAGGAGCGAGTGGCATTGGTCTGGAGACCTCGCGAGTCTTTGCGATGAGAGGAGCCCATGTCATCATCGCAGCAAGGAACACAGAGGCTGCATCTGTAGTGAGGAAGAAAATCATTGAGGAAAACCCAAAAGCTCACATCGATGTTCTGAAGCTTGACCTCAGCTCCCTTAAGTCTGTTAGAGCTTTTGCAGATCAGTTCAACTCGATGAACCTTCCTCTGAACATCCTGATAAATAATGCCGGTGTGATGTTCTGTCCGTTTGGATTGTCTGAAGATGGTGTTGAGATGCAGTTCGCGACCAATCATCTTGGTCACTTTCTGTTGACCAACCTCCTTCTTGATAATATGAAAGCAACCGCGAAGTCCACAGGTATTGAAGGTCGTATTGTGAACTTGTCATCGGTTGCTCACCTCCATACATATCCGAAGGGAATTGAGTTTGATAAACTCAACGATGAGAAAACATACGATGACAAGATGGCTTATGGACAATCTAAGCTGGCAAACATACTTCACGCGAAAGAGCTCTCTAGACGGCTGAAGGAAGAAGGAGCGAACATCACTATTAACTGTGTTC-ATCCT-GGATTGATC-ATGACCAATTTGATGAGGCAC-TCCTTTTTCCTTATGAGGGTGCTTCAATTTGCCACCTACATCTTGTGGAAGAGCGTACCCCAGGGAGCAGCTACCACTTGCTATGTAGGACTGAACCCTCAGCTCAAGGGAGTGACCGGACAATACTTTGCTGACTGCAATGTGGAGAAAACTAGCAGATTTGCGAGGAATGACGCGCTGGCGAAGCAACTCTGGGAATTCAGCGAAAAGCTGATCAAGTCTTCTTCAAAATGAGAGCCCAAAGCAGGATCATCAGCAGAAAAAAGAAGTGTTCTGATACTGTTTGGTTTAATGGCATACTAGTATGTGATGATTGATAAATATGTGTAGCAGCAGTAGTATTAGGAACCTGAAGTATTCTGAACCCTTTTCTAATGTTTCCTTCGGTCATGGCTGAGAATGAGATCAA-CCTGTGTACTCTTGTTAATATATTTGCCAAATACATGAGTTGTTCCAGCAAAAAA]

[+] EMBL AK099949             [CTCCCGCGCCCGCGCATTGAACAACTCGTCGATCTGTCCGGCGAGGGTGAGTGCTTCTTGGCGTGTTCTTTTCGGCGACTTCTTGTTGGGGGGGGGGGGGGGGGGGGGTCGAATTCAGTTGCGTTGCGGTGGCTGAGCTTCTTTGCGTGTTCTTGTTTGGGTTTTGGGGTTGGGGGGTGCAGTGTTGGATCGTGAGTTTGGGGGTTTCTTGGCGGCGTGGTTTGAGATGGGCATCTTGTCGCTCATCACCGGGAAGGCCGGCGCGAGCGGGTTCGGCTCCGGGTCCACGGCGGAGCAGGTCACCGCCGGCGTCGACGCCACCGGCCTCACCGTCATCGTCACAGGAGGAGCGAGTGGCATTGGTCTGGAGACCTCGCGAGTCTTTGCGATGAGAGGAGCCCATGTCATCATCGCAGCAAGGAACACAGAGGCTGCATCTGTAGTGAGGAAGAAAATCATTGAGGAAAACCCAAAAGCTCACATCGATGTTCTGAAGCTTGACCTCAGCTCCCTTAAGTCTGTTAGAGCTTTTGCAGATCAGTTCAACTCGATGAACCTTCCTCTGAACATCCTGATAAATAATGCCGGTGTGATGTTCTGTCCGTTTGGATTGTCTGAAGATGGTGTTGAGATGCAGTTCGCGACCAATCATCTTGGTCACTTTCTGTTGACCAACCTCCTTCTTGATAATATGAAAGCAACCGCGAAGTCCACAGGTATTGAAGGTCGTATTGTGAACTTGTCATCGGTTGCTCACCTCCATACATATCCGAAGGGAATTGAGTTTGATAAACTCAACGATGAGAAAACATACGATGACAAGATGGCTTATGGACAATCTAAGCTGGCAAACATACTTCACGCGAAAGAGCTCTCTAGACGGCTGAAGGAAGAAGGAGCGAACATCACTATTAACTGTGTTC ATCCT GGATTGATC ATGACCAATTTGATGAGGCAC TCCTTTTTCCTTATGAGGGTGCTTCAATTTGCCACCTACATCTTGTGGAAGAGCGTACCCCAGGGAGCAGCTACCACTTGCTATGTAGGACTGAACCCTCAGCTCAAGGGAGTGACCGGACAATACTTTGCTGACTGCAATGTGGAGAAAACTAGCAGATTTGCGAGGAATGACGCGCTGGCGAAGCAACTCTGGGAATTCAGCGAAAAGCTGATCAAGTCTTCTTCAAAATGAGAGCCCAAAGCAGGATCATCAGCAGAAAAAAGAAGTGTTCTGATACTGTTTGGTTTAATGGCATACTAGTATGTGATGATTGATAAATATGTGTAGCAGCAGTAGTATTAGGAACCTGAAGTATTCTGAACCCTTTTCTAATGTTTCCTTCGGTCATGGCTGAGAATGAGATCAA CCTGTGTACTCTTGTTAATATATTTGCCAAATACATGAGTTGTTC          ]
[+] EMBL AU064282             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCGACCAATCATCTTGGTCACTTTCTGTTGACCAACCTCCTTCTTGATAATATGAAAGCAACCGCGAAGTCCACAGGTATTGAAGGTCGTATTGTGAACTTGTCATCGGTTGCTCACCTCCATACATATCCGAAGGGAATTGAGTTTGATAAACTCAACGATGAGAAAACATACGATGACAAGATGGCTTATGGACAATCTAAGCTGGCAAACATACTTCACGCGAAAGAGCTCTCTAGACGGCTGAAGGAAGAAGGAGCGAACATCACTATTAACTGTGTTCAATCCTGGGATTGATCAATGACCAATTTGATGAGGCACTTCCTTTTTtttc                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU097686             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGGGAGTGACCGGACAATACTTTGCTGACTGCAATGTGGAGAAAACTAGCAGATTTGCGAGGAATGACGCGCTGGCGAA NAACTCTGGGAATTCAGCGAAAAGCTGATCAAGTCTTCTTCAAAATGAGAGCCCAAAGCAGGATCATCAGCAGAAAAAAGAAGTGTTCTGATACTGTTTGGTTTAATGGCATACTAGTATGTGATGATTGATAAATATGTGTAGCAGCAGTAGTATTAGGAACCTGAAGTATTCTGAACCCTTTTCTAATGTTTCCTTCGGTCATGGCTGAGAATGAGATCAACCCTGTGTACTCTTGTTAATATATTTGCCAAATACATGAGTTGTTCCAGCAAAAAA]




>consensus_4400#0
CTCCCGCGCCCGCGCATTGAACAACTCGTCGATCTGTCCGGCGAGGGTGAGTGCTTCTTG
GCGTGTTCTTTTCGGCGACTTCTTGTTGGGGGGGGGGGGGGGGGGGGGTCGAATTCAGTT
GCGTTGCGGTGGCTGAGCTTCTTTGCGTGTTCTTGTTTGGGTTTTGGGGTTGGGGGGTGC
AGTGTTGGATCGTGAGTTTGGGGGTTTCTTGGCGGCGTGGTTTGAGATGGGCATCTTGTC
GCTCATCACCGGGAAGGCCGGCGCGAGCGGGTTCGGCTCCGGGTCCACGGCGGAGCAGGT
CACCGCCGGCGTCGACGCCACCGGCCTCACCGTCATCGTCACAGGAGGAGCGAGTGGCAT
TGGTCTGGAGACCTCGCGAGTCTTTGCGATGAGAGGAGCCCATGTCATCATCGCAGCAAG
GAACACAGAGGCTGCATCTGTAGTGAGGAAGAAAATCATTGAGGAAAACCCAAAAGCTCA
CATCGATGTTCTGAAGCTTGACCTCAGCTCCCTTAAGTCTGTTAGAGCTTTTGCAGATCA
GTTCAACTCGATGAACCTTCCTCTGAACATCCTGATAAATAATGCCGGTGTGATGTTCTG
TCCGTTTGGATTGTCTGAAGATGGTGTTGAGATGCAGTTCGCGACCAATCATCTTGGTCA
CTTTCTGTTGACCAACCTCCTTCTTGATAATATGAAAGCAACCGCGAAGTCCACAGGTAT
TGAAGGTCGTATTGTGAACTTGTCATCGGTTGCTCACCTCCATACATATCCGAAGGGAAT
TGAGTTTGATAAACTCAACGATGAGAAAACATACGATGACAAGATGGCTTATGGACAATC
TAAGCTGGCAAACATACTTCACGCGAAAGAGCTCTCTAGACGGCTGAAGGAAGAAGGAGC
GAACATCACTATTAACTGTGTTCATCCTGGATTGATCATGACCAATTTGATGAGGCACTC
CTTTTTCCTTATGAGGGTGCTTCAATTTGCCACCTACATCTTGTGGAAGAGCGTACCCCA
GGGAGCAGCTACCACTTGCTATGTAGGACTGAACCCTCAGCTCAAGGGAGTGACCGGACA
ATACTTTGCTGACTGCAATGTGGAGAAAACTAGCAGATTTGCGAGGAATGACGCGCTGGC
GAAGCAACTCTGGGAATTCAGCGAAAAGCTGATCAAGTCTTCTTCAAAATGAGAGCCCAA
AGCAGGATCATCAGCAGAAAAAAGAAGTGTTCTGATACTGTTTGGTTTAATGGCATACTA
GTATGTGATGATTGATAAATATGTGTAGCAGCAGTAGTATTAGGAACCTGAAGTATTCTG
AACCCTTTTCTAATGTTTCCTTCGGTCATGGCTGAGAATGAGATCAACCTGTGTACTCTT
GTTAATATATTTGCCAAATACATGAGTTGTTCCAGCAAAAAA
clustalw multiple alignements is not computed in this case