cluster # 4405

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Oryza sativa
cluster # 4405 cluster # 4405 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4405#0 length = 750 sequences # 2

consensus_4405#1 length = 510 sequences # 1

consensusID : consensus_4405#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 750
fasta sequence

                              [TCCAGCATCAAGCGAAGCTTTTAGTCCCTGGAGCGCACATACTCTGACCTGGATGATTCATGCTGCCAGGTGGCAACACAAATCGGTGGGAAAATTTGCTCTGCTGTTGTTTCAGTCACAAATGATATTGCATTGAAAATCTGTTCTACAACTGAACACTATACCACCTCGGAGGAGCATTTGAAAGCTTTGGCTAGATTTTGTGCATTCCAGCTTGCTAAGATTCTGATAGATAATGGC-TTTTCCTGGGACAACCTAACGATGTTAAGATTCTACTA-TTCAGTAGAGCACCCAGTGACTGCGGATGTGATGTCCCGTGTATTTTCTGAGGCATTCGCCGAGCTTGAAGAAGGTGGTGTTGGTTCCTGCACACCTGATGGGGTTCCTATTTTCAACATCGTGCCAGTGTCGGCATCTGGTTGCTTCACATCGTTAAGCGACATTATATCATGCGAGCTATTAGCTTCGAAAGTTTAAGACAAGAACTTGGCTTGCGCATGTACGTGCATGATTTGTTTGGTACTCGCTGAAATGCAGTTCGTTTCTTTGGCCAAAAAAAAAGTTGGACCTTAGCATCTCCAGTCTAAGCCAGAACTTGGCTTGCACATGCATTAGGTAAACCATTGCGATAGAGTTAGCAGCGACATTTTTCTGTGGGTTTTATCATATGATACTACACTATATGATAGTACATACTATAAACCTTGGGCCTGATTAGCGGTCCTGAAGCTTGCATTGACAAAAAAAAAA]

[+] EMBL BI813445             [TCCAGCATCAAGCGAAGCTTTTAGTCCCTGGAGCGCACATACTCTGACCTGGATGATTCATGCTGCCAGGTGGCAACACAAATCGGTGGGAAAATTTGCTCTGCTGTTGTTTCAGTCACAAATGATATTGCATTGAAAATCTGTTCTACAACTGAACACTATACCACCTCGGAGGAGCATTTGAAAGCTTTGGCTAGATTTTGTGCATTCCAGCTTGCTAAGATTCTGATAGATAATGGC TTTTCCTGGGACAACCTAACGATGTTAAGATTCTACTA TTCAGTAGAGCACCCAGTGACTGCGGATGTGATGTCCCGTGTATTTTCTGAGGCATTCGCCGAGCTTGAAGAAGGTGGTGTTGGTTCCTGCACACCTGATGGGGTTCCTATTTTCAACATCGTGCCAGTGTCGGCATCTGGTTGCTTCACATCGTTAAGCGACATTATATCATGCGAGCTATTAGCTTCGAAAGTTTAAGACAAGAACTTGGCTTGCGCATGTACGTGCATGATTTGTTTGGTACTCGCTGAAATGCAGTTCGTTTCTTTGGCCAAAAAAAAA                                                                                                                                                                                             ]
[+] EMBL BI813398             [                                                                                                                                                                                                                                           ATCGCTTTTTCCTGGCACCACCTAACGATG TAAGATTCTACTATTTCACTAGA CACCCAGTGACT CGGATGTGATGTCCCGTGTATTTTCTGAGGCATTC CCGAGCTTGAAGAAGGTGGTGTTGGTTCCTGCACACCTGATGGGGTTCCTATTTTCAACATCGTGCCAGTGTCGGCATCTGGTTGCTTCACATCGTTAAGCGACATTATATCATGCGAGCTATTAGCTTCGAAAGTTTAAGACAAGAACTTGGCTTGCGCATGTACGTGCATGATTTGTTTGGTACTCGCTGAAATGCAGTTCGTTTCTTTGGCCTTTTGGGAGGTTGGACCTTAGCATCTCCAGTCTAAGCCAGAACTTGGCTTGCACATGCATTAGGTAAACCATTGCGATAGAGTTAGCAGCGACATTTTTCTGTGGGTTTTATCATATGATACTACACTATATGATAGTACATACTATAAACCTTGGGCCTGATTAGCGGTCCTGAAGCTTGCATTGACAAAAAAAAAA]




>consensus_4405#0
TCCAGCATCAAGCGAAGCTTTTAGTCCCTGGAGCGCACATACTCTGACCTGGATGATTCA
TGCTGCCAGGTGGCAACACAAATCGGTGGGAAAATTTGCTCTGCTGTTGTTTCAGTCACA
AATGATATTGCATTGAAAATCTGTTCTACAACTGAACACTATACCACCTCGGAGGAGCAT
TTGAAAGCTTTGGCTAGATTTTGTGCATTCCAGCTTGCTAAGATTCTGATAGATAATGGC
TTTTCCTGGGACAACCTAACGATGTTAAGATTCTACTATTCAGTAGAGCACCCAGTGACT
GCGGATGTGATGTCCCGTGTATTTTCTGAGGCATTCGCCGAGCTTGAAGAAGGTGGTGTT
GGTTCCTGCACACCTGATGGGGTTCCTATTTTCAACATCGTGCCAGTGTCGGCATCTGGT
TGCTTCACATCGTTAAGCGACATTATATCATGCGAGCTATTAGCTTCGAAAGTTTAAGAC
AAGAACTTGGCTTGCGCATGTACGTGCATGATTTGTTTGGTACTCGCTGAAATGCAGTTC
GTTTCTTTGGCCAAAAAAAAAGTTGGACCTTAGCATCTCCAGTCTAAGCCAGAACTTGGC
TTGCACATGCATTAGGTAAACCATTGCGATAGAGTTAGCAGCGACATTTTTCTGTGGGTT
TTATCATATGATACTACACTATATGATAGTACATACTATAAACCTTGGGCCTGATTAGCG
GTCCTGAAGCTTGCATTGACAAAAAAAAAA

consensusID : consensus_4405#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [AGAGGACGAGACAAGGGGATGTTAAGATTCTACTATTCAGTAGAGCACCCAGTGACTGCGGATGTGATGTCCCGTGTATTTTCTGAGGCATCCGCCGAGCTTGAAGAAGGTGGTGTTGGTTCCTGCACACCTGATGGGGTTCCTATTTTCAACATTGTGCCAGTGTCGGCATCTGGTTGCTTCACATCGTTAGGCGACATTATATCATGCGAGCTATTAGCTTCGAAAGTTTAAGACAAGAACTTGGCTTGCGCATGTACGTGCATGATTTGTTTGGTACTCGCTGAAATGCAGTTCGTTTCTTTGGCCTTTTGGGAGGTTGGAGCCTTAGCATCTCCAGTCTAAGCCAGAACTTGGCTTGCACATGCATTAGGTAAACAATTGCGATAGAGTTAGCAGCGACATTTTTCTGTGGGTTTTATCATATGATACTACACTATATGATAGTACATACTATAAACATGGGGCCTGATTAGCGGTCCTGAAGCTTGCATTGNCAAAAAAAAAAAA]

[-] EMBL CA762205             [AGAGGACGAGACAAGGGGATGTTAAGATTCTACTATTCAGTAGAGCACCCAGTGACTGCGGATGTGATGTCCCGTGTATTTTCTGAGGCATCCGCCGAGCTTGAAGAAGGTGGTGTTGGTTCCTGCACACCTGATGGGGTTCCTATTTTCAACATTGTGCCAGTGTCGGCATCTGGTTGCTTCACATCGTTAGGCGACATTATATCATGCGAGCTATTAGCTTCGAAAGTTTAAGACAAGAACTTGGCTTGCGCATGTACGTGCATGATTTGTTTGGTACTCGCTGAAATGCAGTTCGTTTCTTTGGCCTTTTGGGAGGTTGGAGCCTTAGCATCTCCAGTCTAAGCCAGAACTTGGCTTGCACATGCATTAGGTAAACAATTGCGATAGAGTTAGCAGCGACATTTTTCTGTGGGTTTTATCATATGATACTACACTATATGATAGTACATACTATAAACATGGGGCCTGATTAGCGGTCCTGAAGCTTGCATTGNCAAAAAAAAAAAA]




>consensus_4405#1
AGAGGACGAGACAAGGGGATGTTAAGATTCTACTATTCAGTAGAGCACCCAGTGACTGCG
GATGTGATGTCCCGTGTATTTTCTGAGGCATCCGCCGAGCTTGAAGAAGGTGGTGTTGGT
TCCTGCACACCTGATGGGGTTCCTATTTTCAACATTGTGCCAGTGTCGGCATCTGGTTGC
TTCACATCGTTAGGCGACATTATATCATGCGAGCTATTAGCTTCGAAAGTTTAAGACAAG
AACTTGGCTTGCGCATGTACGTGCATGATTTGTTTGGTACTCGCTGAAATGCAGTTCGTT
TCTTTGGCCTTTTGGGAGGTTGGAGCCTTAGCATCTCCAGTCTAAGCCAGAACTTGGCTT
GCACATGCATTAGGTAAACAATTGCGATAGAGTTAGCAGCGACATTTTTCTGTGGGTTTT
ATCATATGATACTACACTATATGATAGTACATACTATAAACATGGGGCCTGATTAGCGGT
CCTGAAGCTTGCATTGNCAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4405#0      TCCAGCATCAAGCGAAGCTTTTAGTCCCTGGAGCGCACATACTCTGACCTGGATGATTCA 60
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      TGCTGCCAGGTGGCAACACAAATCGGTGGGAAAATTTGCTCTGCTGTTGTTTCAGTCACA 120
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      AATGATATTGCATTGAAAATCTGTTCTACAACTGAACACTATACCACCTCGGAGGAGCAT 180
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      TTGAAAGCTTTGGCTAGATTTTGTGCATTCCAGCTTGCTAAGATTCTGATAGATAATGGC 240
consensus_4405#1      ------------------------------------------------------------
                                                                                  

consensus_4405#0      TTTTCCTGGGACAACCTAACG--ATGTTAAGATTCTACTATTCAGTAGAGCACCCAGTGA 298
consensus_4405#1      -----AGAGGACGAGACAAGGGGATGTTAAGATTCTACTATTCAGTAGAGCACCCAGTGA 55
                              **** *   ** *  *************************************

consensus_4405#0      CTGCGGATGTGATGTCCCGTGTATTTTCTGAGGCATTCGCCGAGCTTGAAGAAGGTGGTG 358
consensus_4405#1      CTGCGGATGTGATGTCCCGTGTATTTTCTGAGGCATCCGCCGAGCTTGAAGAAGGTGGTG 115
                      ************************************ ***********************

consensus_4405#0      TTGGTTCCTGCACACCTGATGGGGTTCCTATTTTCAACATCGTGCCAGTGTCGGCATCTG 418
consensus_4405#1      TTGGTTCCTGCACACCTGATGGGGTTCCTATTTTCAACATTGTGCCAGTGTCGGCATCTG 175
                      **************************************** *******************

consensus_4405#0      GTTGCTTCACATCGTTAAGCGACATTATATCATGCGAGCTATTAGCTTCGAAAGTTTAAG 478
consensus_4405#1      GTTGCTTCACATCGTTAGGCGACATTATATCATGCGAGCTATTAGCTTCGAAAGTTTAAG 235
                      ***************** ******************************************

consensus_4405#0      ACAAGAACTTGGCTTGCGCATGTACGTGCATGATTTGTTTGGTACTCGCTGAAATGCAGT 538
consensus_4405#1      ACAAGAACTTGGCTTGCGCATGTACGTGCATGATTTGTTTGGTACTCGCTGAAATGCAGT 295
                      ************************************************************

consensus_4405#0      TCGTTTCTTTGGCCAAAAAAAAAGTTGGA-CCTTAGCATCTCCAGTCTAAGCCAGAACTT 597
consensus_4405#1      TCGTTTCTTTGGCCTTTTGGGAGGTTGGAGCCTTAGCATCTCCAGTCTAAGCCAGAACTT 355
                      **************       * ****** ******************************

consensus_4405#0      GGCTTGCACATGCATTAGGTAAACCATTGCGATAGAGTTAGCAGCGACATTTTTCTGTGG 657
consensus_4405#1      GGCTTGCACATGCATTAGGTAAACAATTGCGATAGAGTTAGCAGCGACATTTTTCTGTGG 415
                      ************************ ***********************************

consensus_4405#0      GTTTTATCATATGATACTACACTATATGATAGTACATACTATAAACCTTGGGCCTGATTA 717
consensus_4405#1      GTTTTATCATATGATACTACACTATATGATAGTACATACTATAAACATGGGGCCTGATTA 475
                      ********************************************** * ***********

consensus_4405#0      GCGGTCCTGAAGCTTGCATTGACAAAAAAAAAA-- 750
consensus_4405#1      GCGGTCCTGAAGCTTGCATTGNCAAAAAAAAAAAA 510
                      ********************* ***********