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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence
[CTATCGGTTTAAATCGAACTAATTAAACATGAGCTCCACGTAATAGGTCAAGTCCAAGACTAAACAAGTAACAATGTCAGATTTAGGTTCCACAAGCTCGCGTGAAGGTAGAACTCTAATCTTCGCGTGTCTGCTCTATATCGTATCGCTAAGTTTGCAAATGATGACTTGTCAGTTCACGCTTACATGACTCTCTCTGGTGAAAAGCAAACGAATTGACTCGTGATAACTCGGTGATAATGGAAAGTGCAGAAGCTTGATCGTAGATGGAAGCTTGCACACATACGCGTGGCTATGTATAGACTGTCTCTAAGACGATTGCTGGAACGTGTGCACGTGGGTTATAGAGTATATAACAGCTATTACATGGTTACGTCATGTCGAAGCGTACCGGTGGGAAATTAATACCCAAAACGACCAGCGACGCTGGTGGCACAAATCAGGCCCCTTCGTGGCTCTGTGCTCGTCTCCGAGAATTGAATATTGGGACGCAATTTGAGGATGTCAACACGCAATCGCCATCCAGACATGTACTCAAACGAAATAAGGTGGTTCGCTCGTGGGTCGTTCGTTGTATAAAAAATTCGGAATATTTCCGACATACACGTCTTATCTGGAAAACCAAATTCCTTTGGTTTCCGAATTGAAGAAAGGAACATGGTTTTGTGGTTACCTGGTGTGTTTCATTTATTGCTTCCGATTTTTAATACGATTAAAAGCAAAGA]
[+] EMBL CA755456 [CTATCGGTTTAAATCGAACTAATTAAACATGAGCTCCACGTAATAGGTCAAGTCCAAGACTAAACAAGTAACAATGTCAGATTTAGGTTCCACAAGCTCGCGTGAAGGTAGAACTCTAATCTTCGCGTGTCTGCTCTATATCGTATCGCTAAGTTTGCAAATGATGACTTGTCAGTTCACGCTTACATGACTCTCTCTGGTGAAAAGCAAACGAATTGACTCGTGATAACTCGGTGATAATGGAAAGTGCAGAAGCTTGATCGTAGATGGAAGCTTGCACACATACGCGTGGCTATGTATAGACTGTCTCTAAGACGATTGCTGGAACGTGTGCACGTGGGTTATAGAGTATATAACAGCTATTACATGGTTACGTCATGTCGAAGCGTACCGGTGGGAAATTAATACCCAAAACGACCAGCGACGCTGGTGGCACAAATCAGGCCCCTTCGTGGCTCTGTGCTCGTCTCCGAGAATTGAATATTGGGACGCAATTTGAGGATGTCAACACGCAATCGCCATCCAGACATGTACTCAAACGAAATAAGGTGGTTCGCTCGTGGGTCGTTCGTTGTATAAAAAATTCGGAATATTTCCGACATACACGTCTTATCTGGAAAACCAAATTCCTTTGGTTTCCGAATTGAAGAAAGGAACATGGTTTTGTGGTTACCTGGTGTGTTTCATTTATTGCTTCCGATTTTTAATACGATTAAAAGCAAAGA]
consensusID : consensus_442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[TATCGGTTTAAATCGAACTAATTAAACATGGGTCCACGTAAAGGTCAAGTCCAAGCTAAACAAGAACAAGTCAGTTTAGGTCCACAACTCGCTGAAGGTGAACTTAACTTCGGTGTTGCTCATATCTATGCTAGTTTCAATGATACTTTCGTTCACGTTACTGATCTCTCGGGAAAAGAAACAATTGCTCGTGTAACTGGTGGAATGAAAGTCAAAGCTGATCGTGATGAAGCTTCACCATACGCTGCTATGTTAGCTGCTCAAGACGTTGCTGAACGTTGCCGTGGTTTAGGTATTACAGCTTTACATGTTCGTCTTCGAGCTACCGGTGGAAATAAAACCAAAACACCAGGACCTGGTGCACAATCAGCCCTTCGTGCTCTTGCTCGTTCCGGAATTAAAATTGGACGAATTGAGGATGTCACACCAATCCCATCAGACAGTACTCGACGAANAGGTGGTCGTCGTGGTCGTCGTTTATAANAATTCGAATATTTCTACATACACGTCTATCTGGAAACGAAATTCTTTGTTTCCAATTGAAGAAAGACATGTTTTTTGTTTACGTGTGTGTTTCATTATTGTTTCGATTTTTAATACGATNAAAACNA]
[+] EMBL CA758760 [TATCGGTTTAAATCGAACTAATTAAACATGGGTCCACGTAAAGGTCAAGTCCAAGCTAAACAAGAACAAGTCAGTTTAGGTCCACAACTCGCTGAAGGTGAACTTAACTTCGGTGTTGCTCATATCTATGCTAGTTTCAATGATACTTTCGTTCACGTTACTGATCTCTCGGGAAAAGAAACAATTGCTCGTGTAACTGGTGGAATGAAAGTCAAAGCTGATCGTGATGAAGCTTCACCATACGCTGCTATGTTAGCTGCTCAAGACGTTGCTGAACGTTGCCGTGGTTTAGGTATTACAGCTTTACATGTTCGTCTTCGAGCTACCGGTGGAAATAAAACCAAAACACCAGGACCTGGTGCACAATCAGCCCTTCGTGCTCTTGCTCGTTCCGGAATTAAAATTGGACGAATTGAGGATGTCACACCAATCCCATCAGACAGTACTCGACGAANAGGTGGTCGTCGTGGTCGTCGTTTATAANAATTCGAATATTTCTACATACACGTCTATCTGGAAACGAAATTCTTTGTTTCCAATTGAAGAAAGACATGTTTTTTGTTTACGTGTGTGTTTCATTATTGTTTCGATTTTTAATACGATNAAAACNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_442#0 CTATCGGTTTAAATCGAACTAATTAAACATGAGCTCCACGTAATAGGTCAAGTCCAAGAC 60
consensus_442#1 -TATCGGTTTAAATCGAACTAATTAAACATGGG-TCCACGTAA-AGGTCAAGTCCAAG-C 56
****************************** * ********* ************** *
consensus_442#0 TAAACAAGTAACAATGTCAGATTTAGGTTCCACAAGCTCGCGTGAAGGTAGAACTCTAAT 120
consensus_442#1 TAAACAAG-AACAA-GTCAG-TTTAGGT-CCACAA-CTCGC-TGAAGGTGAA---CTTAA 107
******** ***** ***** ******* ****** ***** ******* * ** *
consensus_442#0 CTTCGCGTGTCTGCTCTATATCGTATCGCTAAGTTTGCAAATGATGACTTGTCAGTTCAC 180
consensus_442#1 CTTCG-GTGT-TGCTC-ATATC-TAT-GCTAGTTTC---AATGATACTTTC---GTTCAC 156
***** **** ***** ***** *** **** ** ****** ** ******
consensus_442#0 GCTTACATGACTCTCTCTGGTGAAAAGCAAACGAATTGACTCGTGATAACTCGGTGATAA 240
consensus_442#1 G-TTAC-TGA---TCTCTCGGGAAAAG-AAAC-AATTG-CTCGTG-TAACT-GGTGG-AA 205
* **** *** ***** * ****** **** ***** ****** ***** **** **
consensus_442#0 TGGAAAGTGCAGAAGCTTGATCGTAGATGGAAGCTTGCACACATACGCGTGGCTATGTAT 300
consensus_442#1 TGAAA---GTCAAAGCT-GATCGT-GATG-AAGCTT-CAC-CATACGC--TGCTATGT-T 254
** ** * ***** ****** **** ****** *** ******* ******* *
consensus_442#0 AGACTGTCTCTAAGACGATTGCTGGAACGTGTGCACGTGGGTTATAGAGTATATAACAGC 360
consensus_442#1 AG-CTGCT--CAAGACG-TTGCTG-AACGT-TGC-CGTGGTTTAG-----GTATTACAGC 302
** *** ****** ****** ***** *** ***** *** *** *****
consensus_442#0 TATTACATGGTTACGTCATGTCGAAGCGTACCGGTGGGAAATTAATACCCAAAACGACCA 420
consensus_442#1 T-TTACATGTT-----CGTCTTCGAGC-TACCGGTGGAAA--TAAAACC-AAAAC-ACCA 351
* ******* * * * * *** ********* ** *** *** ***** ****
consensus_442#0 GCGACGCTGGTGGCACAAATCAGGCCCCTTCGTGGCTCTGTGCTCGTCTCCGAGAATTGA 480
consensus_442#1 G-GAC-CTGGTG-CACAA-TCAG--CCCTTCGTG-CTCT-TGCTCGTTCC--GGAATTAA 401
* *** ****** ***** **** ********* **** ******* * ***** *
consensus_442#0 ATATTGGGACGCAATTTGAGGATGTCAACACGCAATCGCCATCCAGACATGTACTCAAAC 540
consensus_442#1 A-ATTGGA---CGAATTGAGGATGTCA-CAC-CAATC-CCATC-AGACA-GTACTCGA-C 451
* ***** * * ************ *** ***** ***** ***** ****** * *
consensus_442#0 GAAATAAGGTGGTTCGCTCGTGGGTCGTTCGTTGTATAAAAAATTCGGAATATTTCCGAC 600
consensus_442#1 GAA--NAGGTGGTCG--TCGTGG-----TCGTCGTTTATAANAATTCGAATATTTCT-AC 501
*** ******* ****** **** ** ** ** * * ********* **
consensus_442#0 ATACACGTCTTATCTGGAAAACCAAATTCCTTTGGTTTCCGAATTGAAGAAAGGAACATG 660
consensus_442#1 ATACACGTCT-ATCTGGAAA-CGAAATTCTTT--GTTTCC-AATTGAAGAAAG--ACATG 554
********** ********* * ****** ** ****** ************ *****
consensus_442#0 GTTTTGTGGTTACCTGGTGTGTTTCATTTATTGCTTCCGATTTTTAATACGATTAAAAGC 720
consensus_442#1 -TTTTTTGTTTACGTG-TGTGTTTCATT-ATTGTTTC-GATTTTTAATACGATNAAAACN 610
**** ** **** ** *********** **** *** *************** ****
consensus_442#0 AAAGA 725
consensus_442#1 A---- 611
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||