These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2119 fasta sequence [TTTCCCATTCCCCCCTCTATTTCAACATCTCCCCCCATGTCTCTCCTCCCCCATCTCGCCATTTCAATTCCACCAACGCGAGAGAGAGAGAGATCGAGAAGCAAACCCGACCCGACAACCAATTTCTCCGACCCAATTCGCCTCCTCCAAGATTCTTGCGCCACCGCCGAGGAGGCGATCGGTTCTTGATTTCTTGAATTCGATTCTTGAAGAATTCTTGGGGGTGGTATGAGGTCGTCGGCGACGGCGGCGGCGGAGGCGGCGGAGGCTGACCAGTCGAGGGCGATGTACGAGCTGTGCGCGCTGCTGCTGACGGTGCTCCGGGCGTGGCCGGAGGAAGGGGGCGGGCGGGGGGCGGCGGCGTGGCCGCGGCAGGTGACGGCGGCGGGGGTGGCGTCGATGCTGCTGGGGGCGTCGGTGGCGCTGATGCTGTGCGGGTCGGTGACCTTCATGCTGGGGTTCTTCCTCATGCCCTGGGTCATCGGCCTCGCCTGCGTCTTCCTCCTCGTCGGGTTCGTCACCAACCTGTCCGTGATCTGGAGGGCCATCCTCTGGCCCGCCTCGTGCTCCTCCTCGCCCAAGGTGGCCTCCACATGTACGTGATCTTGGCCGTTTAGGAGTAGGGCTCCTACATGTTTGGGGACAAAAGGGAAGAGGCTCCTCTTTTTACATGTTTGGGTTAGTCAGGATTGGGGAATTCACTGTGGATTCATGCGTAATTTGGGGGGTAAATATGATGATTGGTGGTGTTTCTTGGCTTTATCAGAGTTCAAAATGCGCTAAATTGAGCGCCTTTGCTTAAATTATGCCCAATTGTGAAGCATCTGTCATACTTTGGGTGCTTCTCTGAAAATTGAGATATGTGTAGCTTCTGTATTTAAATTGTGGTTTTATTAGGATTGTTGCGTTGATTTAGTTCGGGAGGACATCATTCCAAATAATGTGAGCAGCTTGTTGTCGTAGTTAAAATAAAATTGACGCGATGGTAAGAAGTGGAAAGGGTCAGAATTGGTGGTTGTCGATGCAATCCAGATGATTCTCAAATGTTTTGGATCTCTAATTTGATGTAGAGAGGCTGGCTATAGCTTCAGGTTGATGAAATTCGATATTGAAAGGGCGTAAGGGACTAAATTGCGTCGGTGAGCACCGACCATATGAACTGAAAGGGGGAAAGGAGCTGTAAACATATAGAGTCAAAAAGGGCCATATAACAATGAAATGGATGCCTGAGCGCTTTCGTGCTTGCTAAGTAGGAGACCAGAAAGCTTAAGTTTATAACTTTGTTCGTTTCGACGGGATACAAGCTGAGTTTCTTAGGAACAAAGGAGCTTGAGAGGAACTAAATGCAACTAGTGACAATCGAGAAGAAGAGCTTTCTTAGATTCCCAGGAAGAATAGAATAGCCTAGTTAAGCTTGACCTAGTGTATTCCTTTCACCTTTCAAGATTTCACTGTCAATGCATCTAGAAAAATTGATATAGCTAGTTAATTGTTGAAATTAGAAAATACTTTATATGGGTGTAATACAGGTGAAGCTGAACCTCAATTTCCCTGCCAACCTTGATGTGCTTGTTCCTCACAAACGAACAGTATTCTACATCAATTTTCTGTGGTAAATTAATGCGGATGTATTAAGTTCACCATCAAGATCAGCTATTACAACCCAAATAAGTTCAAATATGATATCAGTGCAATTCCTTTCTTGGTCCTACTGACTGTAAACAGTATCATGCCTATATCACTATTATCATCACTATCATGCTTTTAAGAGTTGTTGTCTTTATTGCATTCATACCTATTTCCAACGTTATCGTATAACAAGAGCTTTGGATTGTATCTTCTGGCAGGGTATATATTTTCCAAGCCTCCATTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGTGTATACAAGCAGAAGAGTTTGGGCGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCCCGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAATTAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTATTATTTATTACATCTATCCTA] [+] EMBL AK067860 [TTTCCCATTCCCCCCTCTATTTCAACATCTCCCCCCATGTCTCTCCTCCCCCATCTCGCCATTTCAATTCCACCAACGCGAGAGAGAGAGAGATCGAGAAGCAAACCCGACCCGACAACCAATTTCTCCGACCCAATTCGCCTCCTCCAAGATTCTTGCGCCACCGCCGAGGAGGCGATCGGTTCTTGATTTCTTGAATTCGATTCTTGAAGAATTCTTGGGGGTGGTATGAGGTCGTCGGCGACGGCGGCGGCGGAGGCGGCGGAGGCTGACCAGTCGAGGGCGATGTACGAGCTGTGCGCGCTGCTGCTGACGGTGCTCCGGGCGTGGCCGGAGGAAGGGGGCGGGCGGGGGGCGGCGGCGTGGCCGCGGCAGGTGACGGCGGCGGGGGTGGCGTCGATGCTGCTGGGGGCGTCGGTGGCGCTGATGCTGTGCGGGTCGGTGACCTTCATGCTGGGGTTCTTCCTCATGCCCTGGGTCATCGGCCTCGCCTGCGTCTTCCTCCTCGTCGGGTTCGTCACCAACCTGTCCGTGATCTGGAGGGCCATCCTCTGGCCCGCCTCGTGCTCCTCCTCGCCCAAGGTGGCCTCCACATGTACGTGATCTTGGCCGTTTAGGAGTAGGGCTCCTACATGTTTGGGGACAAAAGGGAAGAGGCTCCTCTTTTTACATGTTTGGGTTAGTCAGGATTGGGGAATTCACTGTGGATTCATGCGTAATTTGGGGGGTAAATATGATGATTGGTGGTGTTTCTTGGCTTTATCAGAGTTCAAAATGCGCTAAATTGAGCGCCTTTGCTTAAATTATGCCCAATTGTGAAGCATCTGTCATACTTTGGGTGCTTCTCTGAAAATTGAGATATGTGTAGCTTCTGTATTTAAATTGTGGTTTTATTAGGATTGTTGCGTTGATTTAGTTCGGGAGGACATCATTCCAAATAATGTGAGCAGCTTGTTGTCGTAGTTAAAATAAAATTGACGCGATGGTAAGAAGTGGAAAGGGTCAGAATTGGTGGTTGTCGATGCAATCCAGATGATTCTCAAATGTTTTGGATCTCTAATTTGATGTAGAGAGGCTGGCTATAGCTTCAGGTTGATGAAATTCGATATTGAAAGGGCGTAAGGGACTAAATTGCGTCGGTGAGCACCGACCATATGAACTGAAAGGGGGAAAGGAGCTGTAAACATATAGAGTCAAAAAGGGCCATATAACAATGAAATGGATGCCTGAGCGCTTTCGTGCTTGCTAAGTAGGAGACCAGAAAGCTTAAGTTTATAACTTTGTTCGTTTCGACGGGATACAAGCTGAGTTTCTTAGGAACAAAGGAGCTTGAGAGGAACTAAATGCAACTAGTGACAATCGAGAAGAAGAGCTTTCTTAGATTCCCAGGAAGAATAGAATAGCCTAGTTAAGCTTGACCTAGTGTATTCCTTTCACCTTTCAAGATTTCACTGTCAATGCATCTAGAAAAATTGATATAGCTAGTTAATTGTTGAAATTAGAAAATACTTTATATGGGTGTAATACAGGTGAAGCTGAACCTCAATTTCCCTGCCAACCTTGATGTGCTTGTTCCTCACAAACGAACAGTATTCTACATCAATTTTCTGTGGTAAATTAATGCGGATGTATTAAGTTCACCATCAAGATCAGCTATTACAACCCAAATAAGTTCAAATATGATATCAGTGCAATTCCTTTCTTGGTCCTACTGACTGTAAACAGTATCATGCCTATATCACTATTATCATCACTATCATGCTTTTAAGAGTTGTTGTCTTTATTGCATTCATACCTATTTCCAACGTTATCGTATAACAAGAGCTTTGGATTGTATCTTCTGGCAGGGTATATATTTTCCAAGCCTCCATTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGTGTATACAAGCAGAAGAGTTTGGGCGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCCCGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAATTAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTATTATTTATTACATCTATCCTA] [+] EMBL AU102027 [ CGGCGGAGGCGGCGGAGGCTGACCAGTCGAGGGCGATGTACGAGCTGTGCGCGCTGCTGCTGACGGTGCTCCGGGCGTGGCCGGAGGAAGGGGGCGGGCGTGGGGCGNCGNCGTGGCC CGGCAGGTGACGGCGGCGNGGGTGGCGTCGATGCTGCTGGGGGCGTCGNTGGCGCTGATGCTGTGCGGGTCGNTGACCTTCATGCTGGGGTTCTTCCTCATGCCCTGGGTCATCGACCTCGTCTGCGTCTTCCTCCTCGTCGGGTTCGTCACCAACCTNTCCGTGATCTNGAGGGCCATCCTCTGGCCNGTCTtg ] consensusID : consensus_4422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [GCACATCNGTGGCTCCATCACATCAGCCCAAGGTGGCCTCCACATGGTATATATTTTCCAAGCCTCCAATTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGTGTATACAAGCAGAAGAGTTTNGGGCGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCCCGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAATTAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTATTATTTATTACATCTATCCTATAATTGTTTCAGAATTGGAGAGTTCTTTTCCTTCAAGGTTTGTATCTTGTTTTTGCTCAACTGGCACTGTCAGACTGATTGTCTCCAAAAAAAA] [+] EMBL AU102028 [GCACATCNGTGGCTCCATCACATCAGCCCAAGGTGGCCTCCACATGGTATATATTTTCCAAGCCTCCAATTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGTGTATACAAGCAGAAGAGTTTNGGGCGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCCCGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAATTAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTATTATTTATTACATCTATCCTATAATTGTTTCAGAATTGGAGAGTTCTTTTCCTTCAAGGTTTGTATCTTGTTTTTGCTCAACTGGCACTGTCAGACTGATTGTCTCCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4422#0 TTTCCCATTCCCCCCTCTATTTCAACATCTCCCCCCATGTCTCTCCTCCCCCATCTCGCC 60 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 ATTTCAATTCCACCAACGCGAGAGAGAGAGAGATCGAGAAGCAAACCCGACCCGACAACC 120 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 AATTTCTCCGACCCAATTCGCCTCCTCCAAGATTCTTGCGCCACCGCCGAGGAGGCGATC 180 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 GGTTCTTGATTTCTTGAATTCGATTCTTGAAGAATTCTTGGGGGTGGTATGAGGTCGTCG 240 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 GCGACGGCGGCGGCGGAGGCGGCGGAGGCTGACCAGTCGAGGGCGATGTACGAGCTGTGC 300 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 GCGCTGCTGCTGACGGTGCTCCGGGCGTGGCCGGAGGAAGGGGGCGGGCGGGGGGCGGCG 360 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 GCGTGGCCGCGGCAGGTGACGGCGGCGGGGGTGGCGTCGATGCTGCTGGGGGCGTCGGTG 420 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 GCGCTGATGCTGTGCGGGTCGGTGACCTTCATGCTGGGGTTCTTCCTCATGCCCTGGGTC 480 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 ATCGGCCTCGCCTGCGTCTTCCTCCTCGTCGGGTTCGTCACCAACCTGTCCGTGATCTGG 540 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 AGGGCCATCCTCTGGCCCGCCTCGTGCTCCTCCTCGCCCAAGGTGGCCTCCACATGTACG 600 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TGATCTTGGCCGTTTAGGAGTAGGGCTCCTACATGTTTGGGGACAAAAGGGAAGAGGCTC 660 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 CTCTTTTTACATGTTTGGGTTAGTCAGGATTGGGGAATTCACTGTGGATTCATGCGTAAT 720 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TTGGGGGGTAAATATGATGATTGGTGGTGTTTCTTGGCTTTATCAGAGTTCAAAATGCGC 780 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TAAATTGAGCGCCTTTGCTTAAATTATGCCCAATTGTGAAGCATCTGTCATACTTTGGGT 840 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 GCTTCTCTGAAAATTGAGATATGTGTAGCTTCTGTATTTAAATTGTGGTTTTATTAGGAT 900 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TGTTGCGTTGATTTAGTTCGGGAGGACATCATTCCAAATAATGTGAGCAGCTTGTTGTCG 960 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TAGTTAAAATAAAATTGACGCGATGGTAAGAAGTGGAAAGGGTCAGAATTGGTGGTTGTC 1020 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 GATGCAATCCAGATGATTCTCAAATGTTTTGGATCTCTAATTTGATGTAGAGAGGCTGGC 1080 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TATAGCTTCAGGTTGATGAAATTCGATATTGAAAGGGCGTAAGGGACTAAATTGCGTCGG 1140 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TGAGCACCGACCATATGAACTGAAAGGGGGAAAGGAGCTGTAAACATATAGAGTCAAAAA 1200 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 GGGCCATATAACAATGAAATGGATGCCTGAGCGCTTTCGTGCTTGCTAAGTAGGAGACCA 1260 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 GAAAGCTTAAGTTTATAACTTTGTTCGTTTCGACGGGATACAAGCTGAGTTTCTTAGGAA 1320 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 CAAAGGAGCTTGAGAGGAACTAAATGCAACTAGTGACAATCGAGAAGAAGAGCTTTCTTA 1380 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 GATTCCCAGGAAGAATAGAATAGCCTAGTTAAGCTTGACCTAGTGTATTCCTTTCACCTT 1440 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TCAAGATTTCACTGTCAATGCATCTAGAAAAATTGATATAGCTAGTTAATTGTTGAAATT 1500 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 AGAAAATACTTTATATGGGTGTAATACAGGTGAAGCTGAACCTCAATTTCCCTGCCAACC 1560 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TTGATGTGCTTGTTCCTCACAAACGAACAGTATTCTACATCAATTTTCTGTGGTAAATTA 1620 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 ATGCGGATGTATTAAGTTCACCATCAAGATCAGCTATTACAACCCAAATAAGTTCAAATA 1680 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 TGATATCAGTGCAATTCCTTTCTTGGTCCTACTGACTGTAAACAGTATCATGCCTATATC 1740 consensus_4422#1 ------------------------------------------------------------ consensus_4422#0 ACTATTATCATCACTATCATGCTTTTAAGAGTTGTTGTCTTTATTGCATTCATACCTATT 1800 consensus_4422#1 -----------------------------------------------------GCACATC 7 * ** consensus_4422#0 TCCAACGTTATCGTATAACAAGAGCTTTGGATTGTATCTTCTGGCAGGGTATATATTTTC 1860 consensus_4422#1 NGTGGCTCCATC-----ACATCAGCCCAAGGTGGCCTCC----ACATGGTATATATTTTC 58 * *** *** *** * * * ** ** ************* consensus_4422#0 CAAGCCTCCA-TTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGT 1919 consensus_4422#1 CAAGCCTCCAATTCATGTCCTACATGTGAAGTTGAATGAGAAGTAGGTTCTCATGGAGGT 118 ********** ************************************************* consensus_4422#0 GTATACAAGCAGAAGAGTTTGGG-CGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCC 1978 consensus_4422#1 GTATACAAGCAGAAGAGTTTNGGGCGGCATTACGTTGTTGCCATCCTATCTTTTCCTTCC 178 ******************** ** ************************************ consensus_4422#0 CGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAAT 2038 consensus_4422#1 CGGACAACATTTTTACCATGTAACGCCGCAACAAGCTTAGATGGTTTTATATATTATAAT 238 ************************************************************ consensus_4422#0 TAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTA 2098 consensus_4422#1 TAGGATGGCAAGCTTTAACAGAAAACTTTGTACATATGGAAAAAGAACGGTTTGGTTTTA 298 ************************************************************ consensus_4422#0 TTATTTATTACATCTATCCTA--------------------------------------- 2119 consensus_4422#1 TTATTTATTACATCTATCCTATAATTGTTTCAGAATTGGAGAGTTCTTTTCCTTCAAGGT 358 ********************* consensus_4422#0 ------------------------------------------------------- consensus_4422#1 TTGTATCTTGTTTTTGCTCAACTGGCACTGTCAGACTGATTGTCTCCAAAAAAAA 413 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||