These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1748 fasta sequence [GCCGTCACCCTCCGCGGCGGCGTGCGCTGCTCCGCTTCACTCCCTTCCATCCATCCCCGGTCGCCGTCGTCTCCGCCCAGGCCAGCACTGACTTGTCCGTTTTATCCGCCTCCGCTTCTCTTCCACTGACCCCTTCTTGGCCTTTTTGGGTGTCTCTCATCCATGAGAGTGATTAGTTGGAGGTTACCAGCTGTAAGTACACCAACAAGCCCTAATAATAGCGAGGCTCGTCAGTTGGGAGGAGGGAGTGGCGGGAAGGAGGAGGGGAAGTTGCTGGGCCAGCGTTGTGGCGGCGGCGGCCGGAGTCGTCGGACGCCATGGAGGCCGTCCAGCCGCCGGTGTTGAGTGACAGATTGAACCCGTTGATCCACCACAGATCAGCTTTTCCAGCCAGTGTTGTGCAGCCTCAAGATCATGGTGACAGCGTTCCGGGCTTGTGCAGTGGATCTTTTATTGACACCAGGGGCAGGCTTAGCAGTGGATCAATGACATCTGAAGATTCACCGGCACTGACGCCGAGATGGTTGTCCATCAAGTCCAACTCCAGCTCTGACAACTGCTTTGAAGGATCGAAAAGAGCGGTATCGTGGTCAGACCGGCATGTTTTCAATCCAAATGGGCAGGTCAACTATGCAGAATTCATGGATTTGATGGAACAGGAGCTTGATACCCAACTTGATAGGCTCAAGGGGGATGTAACTGGGCTGGAAAACTTTGCGTTGCCGGATAATGGGTATATAATTGGTACACACCTGGGCATGTCTCTTGATGTGATGCTGATTGAGATTGATGAGAGGTTCAATGCCTTGAAGTTACTGCTGGCCACAGTGTTTCGGAAGGCTAGGGAGATGGACAGCTCGTCGGTGTCTGATCTGCAGTGGGAGCATGAGTTGCAATTGGAGGTCATCAACATTACAATAGGAGAATTCATCAGTGGCTTGCAAGAGGAGATGGAGAGGAAGCTGTATGAGCAAATTTCTATGACAAACTCCATGAGTAAAAATTGGCAGGATGCCATAGCTCAATTTGCCAGCATGCGCGATGATCTGGGTGCTCTTTCTAAGCTATTGTTGCCCTCACTACAAGAATCACATATTTCTCACAGCAAGCATGAAACTTCAAGCAACAGGAGCAATAGGTGGAAGTACAACATCTTTGGAAAGAAAAACAAGGAGGATCATTCATCTCGCGCGGAGGAAAATAAGAGTTTCAGGAAACAGAAGTCCATGGTTGTCTTGGAAAAATCTGACTTCCGTCACCTGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGAAGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGGAGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTCCACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTTGCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTATATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAATTATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACGATCTCCTGAGACAAATTGCCAAAATTAAAGAGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGT] [+] EMBL AK109744 [GCCGTCACCCTCCGCGGCGGCGTGCGCTGCTCCGCTTCACTCCCTTCCATCCATCCCCGGTCGCCGTCGTCTCCGCCCAGGCCAGCACTGACTTGTCCGTTTTATCCGCCTCCGCTTCTCTTCCACTGACCCCTTCTTGGCCTTTTTGGGTGTCTCTCATCCATGAGAGTGATTAGTTGGAGGTTACCAGCTGTAAGTACACCAACAAGCCCTAATAATAGCGAGGCTCGTCAGTTGGGAGGAGGGAGTGGCGGGAAGGAGGAGGGGAAGTTGCTGGGCCAGCGTTGTGGCGGCGGCGGCCGGAGTCGTCGGACGCCATGGAGGCCGTCCAGCCGCCGGTGTTGAGTGACAGATTGAACCCGTTGATCCACCACAGATCAGCTTTTCCAGCCAGTGTTGTGCAGCCTCAAGATCATGGTGACAGCGTTCCGGGCTTGTGCAGTGGATCTTTTATTGACACCAGGGGCAGGCTTAGCAGTGGATCAATGACATCTGAAGATTCACCGGCACTGACGCCGAGATGGTTGTCCATCAAGTCCAACTCCAGCTCTGACAACTGCTTTGAAGGATCGAAAAGAGCGGTATCGTGGTCAGACCGGCATGTTTTCAATCCAAATGGGCAGGTCAACTATGCAGAATTCATGGATTTGATGGAACAGGAGCTTGATACCCAACTTGATAGGCTCAAGGGGGATGTAACTGGGCTGGAAAACTTTGCGTTGCCGGATAATGGGTATATAATTGGTACACACCTGGGCATGTCTCTTGATGTGATGCTGATTGAGATTGATGAGAGGTTCAATGCCTTGAAGTTACTGCTGGCCACAGTGTTTCGGAAGGCTAGGGAGATGGACAGCTCGTCGGTGTCTGATCTGCAGTGGGAGCATGAGTTGCAATTGGAGGTCATCAACATTACAATAGGAGAATTCATCAGTGGCTTGCAAGAGGAGATGGAGAGGAAGCTGTATGAGCAAATTTCTATGACAAACTCCATGAGTAAAAATTGGCAGGATGCCATAGCTCAATTTGCCAGCATGCGCGATGATCTGGGTGCTCTTTCTAAGCTATTGTTGCCCTCACTACAAGAATCACATATTTCTCACAGCAAGCATGAAACTTCAAGCAACAGGAGCAATAGGTGGAAGTACAACATCTTTGGAAAGAAAAACAAGGAGGATCATTCATCTCGCGCGGAGGAAAATAAGAGTTTCAGGAAACAGAAGTCCATGGTTGTCTTGGAAAAATCTGACTTCCGTCACCTGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGAAGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGGAGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTCCACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTTGCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTATATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAATTATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACGATCTCCTGAGACAAATTGCCAAAATTAAAGAGTATGGAGTTTGTTTCAACCTATTGGTATGAATCTGT] consensusID : consensus_443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence [GACTTCCGTCACCTGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGAAGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGGAGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTCCACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTTGCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTATATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAATTATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACGATCTCCTGAGACAAATTGCCAAAATTAAAGAAGAATATGATGATCTCCAAATCGAAGCCGGTGTTAGGGATGGAGTGTATCAAACTATTACAAGAAAGTTGCTTGATGATTCTATGAACAGCATGCATGATGCTGCAACGAATTTTAGTACAGAACTGTCTTCTCTTGAAGCTATGATATCTGAAAAGGAGAAGGCTTTGTGTTTGTCAAATGAAGAAAACCGAATGTTAAAAGAAAAAATAGCAGAGTTAGAGCAATGTTTGATCCAAGATAAACAGGAAGATCCAGAAGTCATCAAGCAAGAGAGTACAGAGATCATTTTGCGTGATATAGAGGTGGCGCCTCACATATCACCAAGA] [+] EMBL CB648508 [GACTTCCGTCACCTGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGAAGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGGAGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTCCACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTTGCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTATATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAATTATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACGATCTCCTGAGACAAATTGCCAAAATTAAAGAAGAATATGATGATCTCCAAATCGAAGCCGGTGTTAGGGATGGAGTGTATCAAACTATTACAAGAAAGTTGCTTGATGATTCTATGAACAGCATGCATGATGCTGCAACGAATTTTAGTACAGAACTGTCTTCTCTTGAAGCTATGATATCTGAAAAGGAGAAGGCTTTGTGTTTGTCAAATGAAGAAAACCGAATGTTAAAAGAAAAAATAGCAGAGTTAGAGCAATGTTTGATCCAAGATAAACAGGAAGATCCAGAAGTCATCAAGCAAGAGAGTACAGAGATCATTTTGCGTGATATAGAGGTGGCGCCTCACATATCACCAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_443#0 GCCGTCACCCTCCGCGGCGGCGTGCGCTGCTCCGCTTCACTCCCTTCCATCCATCCCCGG 60 consensus_443#1 ------------------------------------------------------------ consensus_443#0 TCGCCGTCGTCTCCGCCCAGGCCAGCACTGACTTGTCCGTTTTATCCGCCTCCGCTTCTC 120 consensus_443#1 ------------------------------------------------------------ consensus_443#0 TTCCACTGACCCCTTCTTGGCCTTTTTGGGTGTCTCTCATCCATGAGAGTGATTAGTTGG 180 consensus_443#1 ------------------------------------------------------------ consensus_443#0 AGGTTACCAGCTGTAAGTACACCAACAAGCCCTAATAATAGCGAGGCTCGTCAGTTGGGA 240 consensus_443#1 ------------------------------------------------------------ consensus_443#0 GGAGGGAGTGGCGGGAAGGAGGAGGGGAAGTTGCTGGGCCAGCGTTGTGGCGGCGGCGGC 300 consensus_443#1 ------------------------------------------------------------ consensus_443#0 CGGAGTCGTCGGACGCCATGGAGGCCGTCCAGCCGCCGGTGTTGAGTGACAGATTGAACC 360 consensus_443#1 ------------------------------------------------------------ consensus_443#0 CGTTGATCCACCACAGATCAGCTTTTCCAGCCAGTGTTGTGCAGCCTCAAGATCATGGTG 420 consensus_443#1 ------------------------------------------------------------ consensus_443#0 ACAGCGTTCCGGGCTTGTGCAGTGGATCTTTTATTGACACCAGGGGCAGGCTTAGCAGTG 480 consensus_443#1 ------------------------------------------------------------ consensus_443#0 GATCAATGACATCTGAAGATTCACCGGCACTGACGCCGAGATGGTTGTCCATCAAGTCCA 540 consensus_443#1 ------------------------------------------------------------ consensus_443#0 ACTCCAGCTCTGACAACTGCTTTGAAGGATCGAAAAGAGCGGTATCGTGGTCAGACCGGC 600 consensus_443#1 ------------------------------------------------------------ consensus_443#0 ATGTTTTCAATCCAAATGGGCAGGTCAACTATGCAGAATTCATGGATTTGATGGAACAGG 660 consensus_443#1 ------------------------------------------------------------ consensus_443#0 AGCTTGATACCCAACTTGATAGGCTCAAGGGGGATGTAACTGGGCTGGAAAACTTTGCGT 720 consensus_443#1 ------------------------------------------------------------ consensus_443#0 TGCCGGATAATGGGTATATAATTGGTACACACCTGGGCATGTCTCTTGATGTGATGCTGA 780 consensus_443#1 ------------------------------------------------------------ consensus_443#0 TTGAGATTGATGAGAGGTTCAATGCCTTGAAGTTACTGCTGGCCACAGTGTTTCGGAAGG 840 consensus_443#1 ------------------------------------------------------------ consensus_443#0 CTAGGGAGATGGACAGCTCGTCGGTGTCTGATCTGCAGTGGGAGCATGAGTTGCAATTGG 900 consensus_443#1 ------------------------------------------------------------ consensus_443#0 AGGTCATCAACATTACAATAGGAGAATTCATCAGTGGCTTGCAAGAGGAGATGGAGAGGA 960 consensus_443#1 ------------------------------------------------------------ consensus_443#0 AGCTGTATGAGCAAATTTCTATGACAAACTCCATGAGTAAAAATTGGCAGGATGCCATAG 1020 consensus_443#1 ------------------------------------------------------------ consensus_443#0 CTCAATTTGCCAGCATGCGCGATGATCTGGGTGCTCTTTCTAAGCTATTGTTGCCCTCAC 1080 consensus_443#1 ------------------------------------------------------------ consensus_443#0 TACAAGAATCACATATTTCTCACAGCAAGCATGAAACTTCAAGCAACAGGAGCAATAGGT 1140 consensus_443#1 ------------------------------------------------------------ consensus_443#0 GGAAGTACAACATCTTTGGAAAGAAAAACAAGGAGGATCATTCATCTCGCGCGGAGGAAA 1200 consensus_443#1 ------------------------------------------------------------ consensus_443#0 ATAAGAGTTTCAGGAAACAGAAGTCCATGGTTGTCTTGGAAAAATCTGACTTCCGTCACC 1260 consensus_443#1 -----------------------------------------------GACTTCCGTCACC 13 ************* consensus_443#0 TGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGA 1320 consensus_443#1 TGAATGGTATGAGTAAAGAGGAGATCATAACTTATTTTAAGTCCGAAATGAGCAAATTGA 73 ************************************************************ consensus_443#0 AGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGG 1380 consensus_443#1 AGAGGATGCATGAATTGGATTTGCAGGAGAAGACCGAGGAGCTCTTCAAATTCAAACGGG 133 ************************************************************ consensus_443#0 AGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTC 1440 consensus_443#1 AGAAGGGATTGCTTACTCTCAAGAATGATGTGGAATTTGAGCCGTTAAGAAAGAAAATTC 193 ************************************************************ consensus_443#0 CACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTT 1500 consensus_443#1 CACAGATTATTTCTAGAATGGACCAAATCATTTCGAAGAACATAAAGATGCCTTCACTTT 253 ************************************************************ consensus_443#0 GCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTAT 1560 consensus_443#1 GCATGACTAATGATGGACTGGATGAAAGATGCATATCAGCAAAAAGAATCGATTCTTTAT 313 ************************************************************ consensus_443#0 ATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAAT 1620 consensus_443#1 ATTACGAAAATCAGCATCTTAGAGGTTTGCTTGCAGATAATATGAAGGATGTCAAGGAAT 373 ************************************************************ consensus_443#0 TATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACG 1680 consensus_443#1 TATCATCTCAGCTATCTGAAGCCAGTAAAGAAATGTCTATTCAGTTGTCATCAGAAGACG 433 ************************************************************ consensus_443#0 ATCTCCTGAGACAAATTGCCAAAATTAAAGAGTATGGAGTTTGTTTCAACCTATTGGTAT 1740 consensus_443#1 ATCTCCTGAGACAAATTGCCAAAATTAAAGAAGAATATGATGATCTCCAAATCGAAGCCG 493 ******************************* * * * * ** * * * consensus_443#0 GAATCTGT---------------------------------------------------- 1748 consensus_443#1 GTGTTAGGGATGGAGTGTATCAAACTATTACAAGAAAGTTGCTTGATGATTCTATGAACA 553 * * * consensus_443#0 ------------------------------------------------------------ consensus_443#1 GCATGCATGATGCTGCAACGAATTTTAGTACAGAACTGTCTTCTCTTGAAGCTATGATAT 613 consensus_443#0 ------------------------------------------------------------ consensus_443#1 CTGAAAAGGAGAAGGCTTTGTGTTTGTCAAATGAAGAAAACCGAATGTTAAAAGAAAAAA 673 consensus_443#0 ------------------------------------------------------------ consensus_443#1 TAGCAGAGTTAGAGCAATGTTTGATCCAAGATAAACAGGAAGATCCAGAAGTCATCAAGC 733 consensus_443#0 ----------------------------------------------------------- consensus_443#1 AAGAGAGTACAGAGATCATTTTGCGTGATATAGAGGTGGCGCCTCACATATCACCAAGA 792 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||