These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence [GATCCAGACTGAGGAGGAGTAAGGGCTCATCGGTATGAGAATTTCAAGAAGTTGTCAAGGACTATCTACAAGTACAATCGCCAAGCGCGGAGCGCGAGGCTCTTTACTTGCCCCTTTAGCCCCTAACGAACTCGCGGACTACAACAACATAAGAGTTAGGTGGACTGGGTACACTGGCTGATGAATCACACTGGGAGGGCTATCTTGATCACATCCACACTATGATGGCTAGGGGTAATGATATTCGCCCTAATGAGAATGCCCTGTGAGGCAGTGAAGAAGAGGAGAAGGGAACTATTCTCAATGCGGGACAAAGCAATGCGTCAAGCCGAGTTGCAGACAAACAGCAGCTAGTCAGAAAGAAAGAGCTCATGTCTGCAACTTTGATTTCCTTGTTGATCTTTGTCCCCTGGGACAGTGATACCTGCTTGTAGCAATGTTTCATGGATGGTACTAAATCTAAGTTATCATCTGCGCACGAACATGTGCTATTTTGTTTTATGTTATGATCAAGCTGAATTAGATGGACTAAGTCATGTGTAATTCTATTTTTCAGTTGCAACGTATGTCTGTTGTCTATTTGTGAAATTATGTCGTCCTAGCTGAACATTTAGTTCCAAAAAAAAAA] [+] EMBL BI803252 [GATCCAGACTGAGGAGGAGTAAGGGCTCATCGGTATGAGAATTTCAAGAAGTTGTCAAGGACTATCTACAAGTACAATCGCCAAGCGCGGAGCGCGAGGCTCTTTACTTGCCCCTTTAGCCCCTAACGAACTCGCGGACTACAACAACATAAGAGTTAGGTGGACTGGGTACACTGGCTGATGAATCACACTGGGAGGGCTATCTTGATCACATCCACACTATGATGGCTAGGGGTAATGATATTCGCCCTAATGAGAATGCCCTGTGAGGCAGTGAAGAAGAGGAGAAGGGAACTATTCTCAATGCGGGACAAAGCAATGCGTCAAGCCGAGTTGCAGACAAACAGCAGCTAGTCAGAAAGAAAGAGCTCATGTCTGCAACTTTGATTTCCTTGTTGATCTTTGTCCCCTGGGACAGTGATACCTGCTTGTAGCAATGTTTCATGGATGGTACTAAATCTAAGTTATCATCTGCGCACGAACATGTGCTATTTTGTTTTATGTTATGATCAAGCTGAATTAGATGGACTAAGTCATGTGTAATTCTATTTTTCAGTTGCAACGTATGTCTGTTGTCTATTTGTGAAATTATGTCGTCCTAGCTGAACATTTAGTTCCAAAAAAAAAA] [+] EMBL BI803935 [ GAGCGCGAGGCTCTTTACTTGCCCCTTTAGCCCCTAACGAACTCGCGGACTACAAC ACA AAGAGTTAGGTGGACTGGGTACACTGGCTGATGAATCACACTGGGAGGGCTATCTTGATCACATCCACACTATGATGGCTAGGGGTAATGATATTCGCCCTAATGAGAATG CCTGTGAGGCAGTGAAGAAGAGGAGAAGGGAACTATTCTCAATGCGGGAC AAGC ATGCGTCAAGCCGAGTTGCAGACAAACAGCAGCTAGTCAGAAAGAAAGAGCTCATGTCTGCAACTTTGATTTCCTTGTTGATCTTTGT CCCTGGGACAGTGATACCTGCTTGTAGC ATGTTTCATGGATGGTACTAAATCTAAGTTATCATCTGCGCACGAACATGTGCTATTTTGTTTTATGTTATGATCAAGCTGAATTAGATGGACTAAGTCATGTGTAATTCTATTTTTCAGTTGCAACGTATGTCTGTTGTCTATTTGTGAAATTATGTCGTCCTAGCTGAACATTTAGTTCCAAAAAAAAAA] consensusID : consensus_4435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [TGACAAGTTCAACGCCGAGCGCGGAACGCGAAGCTCTTTACTTGCCCCTTTAGCCCCTAACGAACTCGCGGACTACAGCCAAGAAGAGTTGGACGGACTGGGTACTCTGGCTGATGAATCACACTGGGAGGGGTATCTCGATCACGTCCACACTATGATTGCTCGGGGTAACGATATTCGCCATAATGAGAATGCCTGCGAGGCCGTGAAGAAGGTACTCAATGTCTATCCCTAATTATCTGCGCAAGNTATTGTTGTTCATTCAGTATGGCCACTAGAAGGAGTATCAGATCTTGTTTAATTTGGAAGCCTGCAATCATATATTTATCTATAAGTTCGCATGATATATGCCGCTTTATAATTAGCGAATTGGCTTTTCGATTTCCAATTGATGAAAGTTGTTCTAGTTTGATATTATCTCTCCTGGCTAGTCGTAAGCCATTGCACAGCAGTCGTAGCAAAGTAGAAACTGCACCGTAGGAGCACTGTAGGCAATGTTATCTGCTCTTTTCTTCAGTCTAATTAGTTATCAGTTGCTCTATTAGCCATTTGGAACTAGCAGCTAACAATTCTTTCTTCGCA] [+] EMBL CF324184 [TGACAAGTTCAACGCCGAGCGCGGAACGCGAAGCTCTTTACTTGCCCCTTTAGCCCCTAACGAACTCGCGGACTACAGCCAAGAAGAGTTGGACGGACTGGGTACTCTGGCTGATGAATCACACTGGGAGGGGTATCTCGATCACGTCCACACTATGATTGCTCGGGGTAACGATATTCGCCATAATGAGAATGCCTGCGAGGCCGTGAAGAAGGTACTCAATGTCTATCCCTAATTATCTGCGCAAGNTATTGTTGTTCATTCAGTATGGCCACTAGAAGGAGTATCAGATCTTGTTTAATTTGGAAGCCTGCAATCATATATTTATCTATAAGTTCGCATGATATATGCCGCTTTATAATTAGCGAATTGGCTTTTCGATTTCCAATTGATGAAAGTTGTTCTAGTTTGATATTATCTCTCCTGGCTAGTCGTAAGCCATTGCACAGCAGTCGTAGCAAAGTAGAAACTGCACCGTAGGAGCACTGTAGGCAATGTTATCTGCTCTTTTCTTCAGTCTAATTAGTTATCAGTTGCTCTATTAGCCATTTGGAACTAGCAGCTAACAATTCTTTCTTCGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4435#0 GATCCAGACTGAGGAGGAGTAAGGGCTCATCGGTATGAGAATTTCAAGAAGTTGTCAAGG 60 consensus_4435#1 ------------------------------------------------------------ consensus_4435#0 ACTATCTACAAGTACAATCGCCAAGCGCGGAGCGCGAGGCTCTTTACTTGCCCCTTTAGC 120 consensus_4435#1 -----TGACAAGTTCAA-CGCCGAGCGCGGAACGCGAAGCTCTTTACTTGCCCCTTTAGC 54 ****** *** **** ******** ***** ********************** consensus_4435#0 CCCTAACGAACTCGCGGACTACAACAACATAAGAGTTAGGTGGACTGGGTACACTGGCTG 180 consensus_4435#1 CCCTAACGAACTCGCGGACTACAGCCA-AGAAGAGTTGGACGGACTGGGTACTCTGGCTG 113 *********************** * * * ******* * *********** ******* consensus_4435#0 ATGAATCACACTGGGAGGGCTATCTTGATCACATCCACACTATGATGGCTAGGGGTAATG 240 consensus_4435#1 ATGAATCACACTGGGAGGGGTATCTCGATCACGTCCACACTATGATTGCTCGGGGTAACG 173 ******************* ***** ****** ************* *** ******* * consensus_4435#0 ATATTCGCCCTAATGAGAATGCCCTGTGAGGCAGTGAAGAAGAGGAGAAGGGAACTATTC 300 consensus_4435#1 ATATTCGCCATAATGAGAATGCC-TGCGAGGCCGTGAAGAAG-GTACTCAATGTCTATCC 231 ********* ************* ** ***** ********* * * **** * consensus_4435#0 TCAAT-------GCGGGACAAAGCAATGCGTCAAGCCGAGTTGC--AGACAAACAGCAG- 350 consensus_4435#1 CTAATTATCTGCGCAAGNTATTGTTGTTCATTCAGTATGGCCACTAGAAGGAGTATCAGA 291 *** ** * * * * * * ** * * * * * *** consensus_4435#0 ------CTAGTCAGAAAGAAAGAGCTCATGTCTGCAACTTTGATTTCCTTGTTGATCTTT 404 consensus_4435#1 TCTTGTTTAATTTGGAAGCCTGCAATCATATATTTATCTATAAGTTCGCA--TGATATAT 349 ** * * *** * **** * * * ** * * *** **** * * consensus_4435#0 GTCCCCTGGGA--CAGTGATACCTGCTTGTAGCAATGTTTCATGGATG------GTACTA 456 consensus_4435#1 GCCGCTTTATAATTAGCGA-ATTGGCTTTT--CGATTTCCAATTGATGAAAGTTGTTCTA 406 * * * * * ** ** * **** * * ** * ** **** ** *** consensus_4435#0 AATCTAAGTTATCATCTGCGCACGAACATGTGCTATTTTGTTTTATGTTATGATCAAGCT 516 consensus_4435#1 GTTTGATATTATCTCTCCTGGCTAGTCGTAAGCCATTGCACAGCA-GTCGTAGCAAAGTA 465 * * ***** * * * ** *** * ** * *** consensus_4435#0 GAAT--------TAGATGGACT--AAGTCATGTG--TAATTCTATTTTTCAGTTGCAACG 564 consensus_4435#1 GAAACTGCACCGTAGGAGCACTGTAGGCAATGTTATCTGCTCTTTTCTTCAGTCTAATTA 525 *** *** * *** * * **** *** ** ****** * consensus_4435#0 TATGTCTGTTG-TCTATTTGTGAAATTATGTCGTCCTAGCTG--AACATTTAGTTCCAAA 621 consensus_4435#1 GTTATCAGTTGCTCTATT-----AGCCATTTGGAACTAGCAGCTAACAATTCTTTCTTCG 580 * ** **** ****** * ** * * ***** * **** ** *** consensus_4435#0 AAAAAAA 628 consensus_4435#1 CA----- 582 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||