cluster # 444

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Oryza sativa
cluster # 444 cluster # 444 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_444#0 length = 559 sequences # 1

consensus_444#1 length = 365 sequences # 1

consensusID : consensus_444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCGCGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGCGATAATTCTGGCCTCAGCGCTTGGTACGATTCGGTGGATTTGTTGATGGTCATCTAACAGGAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCGCGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAAGGCCATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACAAGCAGATGCATCCCAAATTTCT]

[+] EMBL CF315759             [TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCGCGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGCGATAATTCTGGCCTCAGCGCTTGGTACGATTCGGTGGATTTGTTGATGGTCATCTAACAGGAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCGCGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAAGGCCATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACAAGCAGATGCATCCCAAATTTCT]




>consensus_444#0
TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCG
CGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGC
GATAATTCTGGCCTCAGCGCTTGGTACGATTCGGTGGATTTGTTGATGGTCATCTAACAG
GAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCGCGT
TTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGAC
CAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAA
CAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTC
TCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAAGGC
CATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACAAGC
AGATGCATCCCAAATTTCT

consensusID : consensus_444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [TGTATTTCCTGAACTCTGAACAAACAGTACTGGTTGTCGTTCTGAATTGAACTGTAAATGCTATACCACTAGACTTGATCGATTCGTTTCTAGCGGCATGCTAATTGTTCCATTGCAGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAAGGCCATCTG]

[+] EMBL AU030643             [TGTATTTCCTGAACTCTGAACAAACAGTACTGGTTGTCGTTCTGAATTGAACTGTAAATGCTATACCACTAGACTTGATCGATTCGTTTCTAGCGGCATGCTAATTGTTCCATTGCAGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAAGGCCATCTG]




>consensus_444#1
TGTATTTCCTGAACTCTGAACAAACAGTACTGGTTGTCGTTCTGAATTGAACTGTAAATG
CTATACCACTAGACTTGATCGATTCGTTTCTAGCGGCATGCTAATTGTTCCATTGCAGTT
TCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCGGACC
AATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTAAAAC
AGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAGTTCT
CAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAAGGCC
ATCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_444#0      TGAGCGGAGCCCAGCACACACACAGACAGTGTCGACATTAGCCGTTGCAGCACTCGGGCG 60
consensus_444#1      ------------------------------------------------------------
                                                                                 

consensus_444#0      CGTCCTCTGAATTGCGACGGGATCCCCTCCTGGAACCGGAGGAGAGAAACGGATTCCCGC 120
consensus_444#1      -------------------------------------------------TGTATTTCC-- 9
                                                                       * *** **  

consensus_444#0      GATAATTCTGGCCT--CAGCGCTTGGTACGATTCGGTGGATTTG-TTGATGGTCATCTAA 177
consensus_444#1      -TGAACTCTGAACAAACAGTACTGGTTGTCGTTC--TGAATTGAACTGTAAATGCTATAC 66
                        ** ****  *   ***  ** * *    ***  ** ***    **    *  * ** 

consensus_444#0      CAGGAGGAGAGATCGTTTCGCCGGGAGGAGGACGAAATCAGGGAATCACCGAAGAACGCG 237
consensus_444#1      CACTAGACTTGATCGATTCGTTTCTAGCGGCATG--CTAATTGTTCCATTGCAG------ 118
                     **  **    ***** ****     **  * * *   * *  *   **  * **      

consensus_444#0      CGTTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCG 297
consensus_444#1      --TTTCAGGTTCCCTCAGTAAAACGCCAAGATGGTTAATTTCGGGAAGAGACTGATGGCG 176
                       **********************************************************

consensus_444#0      GACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTA 357
consensus_444#1      GACCAATTGGAGGAGTGGAAAGAGTACTACATCAATTACAAAATGATGAAGAAAAAGGTA 236
                     ************************************************************

consensus_444#0      AAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAG 417
consensus_444#1      AAACAGTATGTTCAGCAGACGCAGAATGGTGGAAGAAATCGTGAACAGGTTCTTAAAGAG 296
                     ************************************************************

consensus_444#0      TTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCTCTTTCTTCTGCAACAACAA 477
consensus_444#1      TTCTCAAGGATGCTTGATGATCAGATTGAGAAGATTGTGCNCTTCCTTCTGCAACAACAA 356
                     **************************************** *** ***************

consensus_444#0      GGCCATCTTGCTAGCAGAATCGAGAAATTGGGAGAAAGAGCGTGCATTGCTCATGGAACA 537
consensus_444#1      GGCCATCTG--------------------------------------------------- 365
                     ********                                                    

consensus_444#0      AGCAGATGCATCCCAAATTTCT 559
consensus_444#1      ----------------------