cluster # 4443

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Oryza sativa
cluster # 4443 cluster # 4443 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4443#0 length = 847 sequences # 2

consensus_4443#1 length = 181 sequences # 1

consensusID : consensus_4443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 847
fasta sequence

                              [CGAATTCGGCACGAGGATCGCTTGGCAAGAAGCTAAGCTAGCTACCCTTCCAAACAAGAGAGAGAGAGAGCTTGAATTGAAGTAACCCAAAGGGCAATTTTTTCCCCTGCTAGCTAGCTAGCTGTAGATCCAGGCTCAGATCAGCTAGCCTAGCTAGCTAGCTACCGGTGTTCGAGACGACGGCTGGCCGCCGGCCGGCCGGCGGCGGGGGCGGCGGCGGCGTCCATGGACTGCGCAGTGGTCCAGATCGTGATGCAGGTGGTCCTGAGGAGGAGCATCTGCAGGCTGCAGGAAGTCTTCCGCGTGGCGGTGGAGCTCGGCGCGGCGATCCTCGCGGCGGTGCGGTTGTCCGGCATTGCTTCCCACCGGCCGACGACGCCGACGTCTTCGCCGGCGGCCGCATCAAGGACGACGACGACGACGTACTACTACTCGCCGGTGGCGGCCTCCATGATCGGCATGTCCANGCTTGACAGGCACTAGCTAGGGTGAGCTACACAGATCGATCATGCTTTGCC-TTGGTAAATAATCATCACATCGTAAATTTGTCTGAGAATCAAATTGAGTGGA-TTCTGTTTATACAATTAGAGGCATGTATATGGATATGTCAATCGATNGTNAATGAGACATGGTAAGAATTANACAAAAAAANAAACCTCAGGGGGGCCCGTACCACTCGCCATATATAGTCTATCACATCCTGCCGTGTTAACACTTTGACTGAAACCGTCCTACCAATACCGCCACATCATCTCTTCTCCCGGNNTATCAAGCCCCCANCCTTCACATCCCCGAGTGAGTCATTCCATATGTGATGTATTTTACCCTACAGCACACACTTTAACAG]

[+] EMBL CA753327             [CGAATTCGGCACGAGGATCGCTTGGCAAGAAGCTAAGCTAGCTACCCTTCCAAACAAGAGAGAGAGAGAGCTTGAATTGAAGTAACCCAAAGGGCAATTTTTTCCCCTGCTAGCTAGCTAGCTGTAGATCCAGGCTCAGATCAGCTAGCCTAGCTAGCTAGCTACCGGTGTTCGAGACGACGGCTGGCCGCCGGCCGGCCGGCGGCGGGGGCGGCGGCGGCGTCCATGGACTGCGCAGTGGTCCAGATCGTGATGCAGGTGGTCCTGAGGAGGAGCATCTGCAGGCTGCAGGAAGTCTTCCGCGTGGCGGTGGAGCTCGGCGCGGCGATCCTCGCGGCGGTGCGGTTGTCCGGCATTGCTTCCCACCGGCCGACGACGCCGACGTCTTCGCCGGCGGCCGCATCAAGGACGACGACGACGACGTACTACTACTCGCCGGTGGCGGCCTCCATGATCGGCATGTCCANGCTTGACAGGCACTAGCTAGGGTGAGCTACACAGATCGATCATGCTTTGCC TTGGTAAATAATCATCACATCGTAAATTTGTCTGAGAATCAAATTGAGTGGA TTCTGTTTATACAATTAGAGGCATGTATATGGATATGTCAATCGATNGTNAATGAGACATGGTAAGAATTANACAAAAAAANAAACCTCAGGGGGGCCCGTACCACTCGCCATATATAGTCTATCACATCCTGCCGTGTTAACACTTTGACTGAAACCGTCCTACCAATACCGCCACATCATCTCTTCTCCCGGNNTATCAAGCCCCCANCCTTCACATCCCCGAGTGAGTCATTCCATATGTGATGTATTTTACCCTACAGCACACACTTTAACAG]
[+] EMBL AK062919             [                                    GCTAGCTACCCTTCCAAACAAGAGAGAGAGAGAGCTTGAATTGAAGTAACCCAAAGGGCAATTTTTTCCCCTGCTAGCTAGCTAGCTGTAGATCCAGGCTCAGATCAGCTAGCCTAGCTAGCTAGCTACCGGTGTTCGAGACGACGGCTGGCCGCCGGCCGGCCGGCGGCGGGGGCGGCGGCGGCGTCCATGGACTGCGCAGTGGTCCAGATCGTGATGCAGGTGGTCCTGAGGAGGAGCATCTGCAGGCTGCAGGAAGTCTTCCGCGTGGCGGTGGAGCTCGGCGCGGCGATCCTCGCGGCGGTGCGGTTGTCCGGCATGGCTTCCCACCGGCCGACGACGCCGACGTCTTCGCCGGCGGCCGCATCAAGGACGACGACGACGACGTACTACTACTCGCCGGTGGTGGCCTCCATGATCGGCATGTCCAGGCTTGACAGGCACTAGCTAGGGTGAGCTACACAGATCGATCATGCTTTGCCTTTGTTAAATAATCATCACATCGTTAATTTGTCTGAGAATCAAATTGAGTTGAGTACTGTTTATACAATTAGAGGCATGTATATGGATATGTCAA                                                                                                                                                                                                                                            ]




>consensus_4443#0
CGAATTCGGCACGAGGATCGCTTGGCAAGAAGCTAAGCTAGCTACCCTTCCAAACAAGAG
AGAGAGAGAGCTTGAATTGAAGTAACCCAAAGGGCAATTTTTTCCCCTGCTAGCTAGCTA
GCTGTAGATCCAGGCTCAGATCAGCTAGCCTAGCTAGCTAGCTACCGGTGTTCGAGACGA
CGGCTGGCCGCCGGCCGGCCGGCGGCGGGGGCGGCGGCGGCGTCCATGGACTGCGCAGTG
GTCCAGATCGTGATGCAGGTGGTCCTGAGGAGGAGCATCTGCAGGCTGCAGGAAGTCTTC
CGCGTGGCGGTGGAGCTCGGCGCGGCGATCCTCGCGGCGGTGCGGTTGTCCGGCATTGCT
TCCCACCGGCCGACGACGCCGACGTCTTCGCCGGCGGCCGCATCAAGGACGACGACGACG
ACGTACTACTACTCGCCGGTGGCGGCCTCCATGATCGGCATGTCCANGCTTGACAGGCAC
TAGCTAGGGTGAGCTACACAGATCGATCATGCTTTGCCTTGGTAAATAATCATCACATCG
TAAATTTGTCTGAGAATCAAATTGAGTGGATTCTGTTTATACAATTAGAGGCATGTATAT
GGATATGTCAATCGATNGTNAATGAGACATGGTAAGAATTANACAAAAAAANAAACCTCA
GGGGGGCCCGTACCACTCGCCATATATAGTCTATCACATCCTGCCGTGTTAACACTTTGA
CTGAAACCGTCCTACCAATACCGCCACATCATCTCTTCTCCCGGNNTATCAAGCCCCCAN
CCTTCACATCCCCGAGTGAGTCATTCCATATGTGATGTATTTTACCCTACAGCACACACT
TTAACAG

consensusID : consensus_4443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence

                              [TTGCCTTTGTTAAATAATCATCACATCGTTAATTTGTCTGAGAATCAAATTGAGTTGAGTACTGTTTATACAATTAGAGGCATGTATATGGATATGTGTAGCTCACCCTAGCTAGTGCCTGTCAAGCCTGGACATGCCGATCATGGAGGCCACCACCGGCGAGTAGTAGTACGTCGTCGTC]

[+] EMBL OSC1831              [TTGCCTTTGTTAAATAATCATCACATCGTTAATTTGTCTGAGAATCAAATTGAGTTGAGTACTGTTTATACAATTAGAGGCATGTATATGGATATGTGTAGCTCACCCTAGCTAGTGCCTGTCAAGCCTGGACATGCCGATCATGGAGGCCACCACCGGCGAGTAGTAGTACGTCGTCGTC]




>consensus_4443#1
TTGCCTTTGTTAAATAATCATCACATCGTTAATTTGTCTGAGAATCAAATTGAGTTGAGT
ACTGTTTATACAATTAGAGGCATGTATATGGATATGTGTAGCTCACCCTAGCTAGTGCCT
GTCAAGCCTGGACATGCCGATCATGGAGGCCACCACCGGCGAGTAGTAGTACGTCGTCGT
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4443#0      CGAATTCGGCACGAGGATCGCTTGGCAAGAAGCTAAGCTAGCTACCCTTCCAAACAAGAG 60
consensus_4443#1      ------------------------------------------------------------
                                                                                  

consensus_4443#0      AGAGAGAGAGCTTGAATTGAAGTAACCCAAAGGGCAATTTTTTCCCCTGCTAGCTAGCTA 120
consensus_4443#1      ------------------------------------------------------------
                                                                                  

consensus_4443#0      GCTGTAGATCCAGGCTCAGATCAGCTAGCCTAGCTAGCTAGCTACCGGTGTTCGAGACGA 180
consensus_4443#1      ------------------------------------------------------------
                                                                                  

consensus_4443#0      CGGCTGGCCGCCGGCCGGCCGGCGGCGGGGGCGGCGGCGGCGTCCATGGACTGCGCAGTG 240
consensus_4443#1      ------------------------------------------------------------
                                                                                  

consensus_4443#0      GTCCAGATCGTGATGCAGGTGGTCCTGAGGAGGAGCATCTGCAGGCTGCAGGAAGTCTTC 300
consensus_4443#1      ------------------------------------------------------------
                                                                                  

consensus_4443#0      CGCGTGGCGGTGGAGCTCGGCGCGGCGATCCTCGCGGCGGTGCGGTTGTCCGGCATTGCT 360
consensus_4443#1      ------------------------------------------------------------
                                                                                  

consensus_4443#0      TCCCACCGGCCGACGACGCCGACGTCTTCGCCGGCGGCCGCATCAAGGACGACGACGACG 420
consensus_4443#1      ------------------------------------------------------------
                                                                                  

consensus_4443#0      ACGTACTACTACTCGCCGGTGGCGGCCTCCATGATCGGCATGTCCANGCTTGACAGGCAC 480
consensus_4443#1      ------------------------------------------------------------
                                                                                  

consensus_4443#0      TAGCTAGGGTGAGCTACACAGATCGATCATGCTTTGCCTTGGTAAATAATCATCACATCG 540
consensus_4443#1      --------------------------------TTGCCTTTGTTAAATAATCATCACATCG 28
                                                      **  * *** ******************

consensus_4443#0      TAAATTTGTCTGAGAATCAAATTGAGTGGATT-CTGTTTATACAATTAGAGGCATGTATA 599
consensus_4443#1      TTAATTTGTCTGAGAATCAAATTGAGTTGAGTACTGTTTATACAATTAGAGGCATGTATA 88
                      * ************************* ** * ***************************

consensus_4443#0      TGGATATGTCAATCGATNGTNAATGAGACATGGTAAGAATTANACAAAAAAANAAACCTC 659
consensus_4443#1      TGGATATGT------GTAGCTCACCCTAGCTAGTGCCTGTCAAGCCTGGACATGCCGATC 142
                      *********       * *   *    *  * **     * *  *    * *      **

consensus_4443#0      AGGGGGGCCCGTACCACTCGCCATATATAGTCTATCACATCCTGCCGTGTTAACACTTTG 719
consensus_4443#1      ATGGAGGCC---ACCACCGGCGAGTAGTAGTACGTCGTCGTC------------------ 181
                      * ** ****   *****  ** *    ****   **     *                  

consensus_4443#0      ACTGAAACCGTCCTACCAATACCGCCACATCATCTCTTCTCCCGGNNTATCAAGCCCCCA 779
consensus_4443#1      ------------------------------------------------------------
                                                                                  

consensus_4443#0      NCCTTCACATCCCCGAGTGAGTCATTCCATATGTGATGTATTTTACCCTACAGCACACAC 839
consensus_4443#1      ------------------------------------------------------------
                                                                                  

consensus_4443#0      TTTAACAG 847
consensus_4443#1      --------