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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1582 fasta sequence
[GTCCAAAGAGAACCGTCTTGCAACTCTTGACATTTTTGCTGGCTGTGGAGGTTTATCAGAAGGACTGCAGCAAGCTGGTGTATCGTTTACAAAGTGGGCGATTGAATATGAGGAACCAGCTGGTGAAGCATTTACCAAAAATCATCCAGAAGCTGCGGTGTTTGTGGATAACTGCAATGTGATTTTGAAGGCAATTATGGACAAATGTGGAGATGCTGATGATTGCATTTCAACTTCTGAGGCTGCTGAACAAGCAGCTAAATTTTCTCAGGACAATATTATGAACCTTCCTGTCCCTGGTGAAGTAGAATTCATAAATGGTGGTCCTCCATGTCAGGGCTTTTCTGGGATGAACAGATTTAACCAAAGCCCATGGAGTAAAGTTCAATGTGAGATGATTTTAGCATTCCTGTCTTTTGCTGAATATTTCCGCCCCAGATTCTTTCTTTTAGAAAATGTTAGGAACTTTGTTTCATTCAACAAAGGACAGACATTTCGACTGACAGTTGCATCCCTTCTGGAGATGGGATACCAGGTCCGGTTTGGAATTTTAGAGGCAGGGACTTTTGGTGTTGCTCAGTCCAGGAAAAGAGCATTCATTTGGGCTGCTGCACCTGGAGAGACTCTGCCTGATTGGCCAGAACCAATGCATGTGTTTGCTAGCCCTGAGCTGAAAATAAATTTGCCTGATGGTAA--ACTATGCAGCTGCAAAAAGCACTGCTGGTGGTGCTCCTTTCCGTGCAATAACAGTT--ATATACAATAGGCG-ATTTACCAAAGGTGGAGAATGGCGCCAGTAAACTCCTACTTGAGTACGGTGGCGAACCCATCTCCTGGTTCCAGAAGAAGATTAGAGGGAACACGATCGCGCTGAATGATCACATATCTAAGGAGATGAATGAACTGAACCTCATCAGATGCCAACGCATTCCAAAGCGGCCTGGTTGTGATTGGCATGACCTACCAGATGAGAAGGTGAAACTATCATCTGGCCAACTGGTGGACCTGATCCCTTGGTGCCTGCCTAACACAGCTAAAAGGCACAACCAGTGGAAAGGGCTTTATGGTAGGCTGGATTGGGAGGGCAATTTCCCTACTTCTGTGACAGACCCCCAGCCAATGGGCAAGGTTGGCATGTGCTTCCACCCTGACCAGGATAGGATCATCACAGTCCGTGAATGTGCGCGATCTCAGGGCTTTCCTGACAACTACCAGTTCGCGGGCAACATCCAGAGCAAGCACAGGCAGATTGGCAATGCGGTGCCTCCACCTCTTGCCTTCGCCCTCGGGAGGAAACTGAAGGAAGCTGTTGATGCAAAGCGTCAGTAGGTGCTCAGAGTCCTTCTCCGATGATCGAGGGAGATGATTCTCCCCTGAAAAGAAACAAACAACCAAACATATGAGTGTACTTATTTTAATTGTGCGCTGCATTTAACTTTGTGTGTTGATTAAGATTTTAGTCATATAGATCCTTGGTAACCTTGTACATTTTAGAGGTTGTGTTGTGATTGATACCCTTGATTCAGGGGTATGATTTAGTGGCTGTATTCAGATATTTAAACAAAATAATACTAGTTAGTGATGG]
[+] EMBL AK111461 [GTCCAAAGAGAACCGTCTTGCAACTCTTGACATTTTTGCTGGCTGTGGAGGTTTATCAGAAGGACTGCAGCAAGCTGGTGTATCGTTTACAAAGTGGGCGATTGAATATGAGGAACCAGCTGGTGAAGCATTTACCAAAAATCATCCAGAAGCTGCGGTGTTTGTGGATAACTGCAATGTGATTTTGAAGGCAATTATGGACAAATGTGGAGATGCTGATGATTGCATTTCAACTTCTGAGGCTGCTGAACAAGCAGCTAAATTTTCTCAGGACAATATTATGAACCTTCCTGTCCCTGGTGAAGTAGAATTCATAAATGGTGGTCCTCCATGTCAGGGCTTTTCTGGGATGAACAGATTTAACCAAAGCCCATGGAGTAAAGTTCAATGTGAGATGATTTTAGCATTCCTGTCTTTTGCTGAATATTTCCGCCCCAGATTCTTTCTTTTAGAAAATGTTAGGAACTTTGTTTCATTCAACAAAGGACAGACATTTCGACTGACAGTTGCATCCCTTCTGGAGATGGGATACCAGGTCCGGTTTGGAATTTTAGAGGCAGGGACTTTTGGTGTTGCTCAGTCCAGGAAAAGAGCATTCATTTGGGCTGCTGCACCTGGAGAGACTCTGCCTGATTGGCCAGAACCAATGCATGTGTTTGCTAGCCCTGAGCTGAAAATAAATTTGCCTGATGGTAA ACTATGCAGCTGCAAAAAGCACTGCTGGTGGTGCTCCTTTCCGTGCAATAACAGTT ATATACAATAGGCG ATTTACCAAAGGTGGAGAATGGCGCCAGTAAACTCCTACTTGAGTACGGTGGCGAACCCATCTCCTGGTTCCAGAAGAAGATTAGAGGGAACACGATCGCGCTGAATGATCACATATCTAAGGAGATGAATGAACTGAACCTCATCAGATGCCAACGCATTCCAAAGCGGCCTGGTTGTGATTGGCATGACCTACCAGATGAGAAGGTGAAACTATCATCTGGCCAACTGGTGGACCTGATCCCTTGGTGCCTGCCTAACACAGCTAAAAGGCACAACCAGTGGAAAGGGCTTTATGGTAGGCTGGATTGGGAGGGCAATTTCCCTACTTCTGTGACAGACCCCCAGCCAATGGGCAAGGTTGGCATGTGCTTCCACCCTGACCAGGATAGGATCATCACAGTCCGTGAATGTGCGCGATCTCAGGGCTTTCCTGACAACTACCAGTTCGCGGGCAACATCCAGAGCAAGCACAGGCAGATTGGCAATGCGGTGCCTCCACCTCTTGCCTTCGCCCTCGGGAGGAAACTGAAGGAAGCTGTTGATGCAAAGCGTCAGTAGGTGCTCAGAGTCCTTCTCCGATGATCGAGGGAGATGATTCTCCCCTGAAAAGAAACAAACAACCAAACATATGAGTGTACTTATTTTAATTGTGCGCTGCATTTAACTTTGTGTGTTGATTAAGATTTTAGTCATATAGATCCTTGGTAACCTTGTACATTTTAGAGGTTGTGTTGTGATTGATACCCTTGATTCAGGGGTATGATTTAGTGGCTGTATTCAGATATTTAAACAAAATAATACTAGTTAGTGATGG]
[+] EMBL CA753325 [ TGTGGATAACTGCAATGTGATTTTGAAGGCAATTATGGACAAATGTGGAGATGCTGATGATTGCATTTCAACTTCTGAGGCTGCTGAACAAGCAGCTAAATTTTCTCAGGACAATATTATGAACCTTCCTGTCCCTGGTGAAGTAGAATTCATAAATGGTGGTCCTCCATGTCAGGGCTTTTCTGGGATGAACAGATTTAACCAAAGCCCATGGAGTAAAGTTCAATGTGAGATGATTTTAGCATTCCTGTCTTTTGCTGAATATTTCCGCCCCAGATTCTTTCTTTTAGAAAATGTTAGGAACTTTGTTTCATTCAACAAAGGACAGACATTTCGACTGACAGTTGCATCCCTTCTGGAGATGGGATACCAGGTCCGGTTTGGAATTTTAGAGGCAGGGACTTTTGGTGTTGCTCAGTCCAGGAAAAGAGCATTCATTTGGGCTGCTGCACCTGGAGAGACTCTGCCTGATTGGCCAGAACCAATGCATGTGTTTGCTAGCCCTGAGCTGAAAATAAATTTGCCTGATGGTAAATACTATGCAGCTGCAAAAAGCACTGCTGGTGGTGCTCCTTTCCGTGCAATAACAGTTAGAGATACAATAGGCGAATNTACC AAGGTGGAGAATGGCGCCAGT AACTCCTACTGGAGTACGGTGGCGAACCCATCTCC GGTTCCAAAAG AGATang ]
consensusID : consensus_4444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1365 fasta sequence
[AATGGGCTATTGAATATGAAGAACCTGCTGGGGATGCATTTGGTGAAAACCATCCAGAAGCTGCAGTATTTGTCGAAAACTGCAATGTGATTCTGAAGGCAATTATGGACAAGTGTGGTGATTCTGATGATTGCATCTCCACTTCTGAGGCTGCTGAACGAGCAGCTAAACTTTCTGAGGACAAGATTAAGAATCTGCCCGTGCCTGGCGAAGTAGAATTCATAAATGGTGGCCCTCCGTGTCAGGGTTTTTCTGGGATGAACAGATTCAATCAAAGTCCCTGGAGCAAAGTCCAGTGCGAGATGATCTTAGCATTCCTGTCATTTGCGGAGTATTTCCGTCCTAGATTCTTTCTCTTAGAAAATGTTAGGAACTTTGTCTCGTTCAACAAAGGACAGACCTTCAGATTGACACTGGCATCACTCCTGGAGATGGGATACCAGGTCCGATTTGGAATTTTAGAGGCAGGGGCTTATGGTGTTGCGCAGTCCAGGAAAAGGGCATTCATTTGGGCCGCTGCACCTGGAGAGACTCTTCCAGAGTGGCCTGAACCAATGCACGTCTTTGCTAGCCCTGAGCTGAAAATAACTCTACCTGATGGCAAGTTCTACGCCGCTGTCAAGAGCACCGCTGCAGGAGCCCCTTTCCGCTCAATTACAGTTCGAGATACAATTGGGGATCTACCAGCTGTGGAAAATGGCGCCGGCAAACCAACAATTCAGTACGGAAGCGGTCCTGTGTCTTGGTTCCAGAAGAAGATTAGAAGCGACATGGCTTCACTGAATGACCACATATCTAAAGAGATGAATGAGCTGAACCTCATAAGATGCAAGCACATTCCAAAGCGCCCAGGTTGCGACTGGCATGACCTGCCAGATGAAAAGGTGAAGCTGTCCACAGGGCAGATGGTGGACTTGATCCCTTGGTGCTTGCCCAACACAGCCAAAAGGCACAATCAGTGGAAAGGACTGTACGGTAGGTTGGACTGGGAGGGCAATTTCCCCACTTCTGTAACGGATCCTCAGCCAATGGGGAAGGTCGGCATGTGCTTCCATCCTGAGCAGGACAGGATCATTACTGTCCGTGAATGTGCTCGATCCCAGGGCTTCCCCGATAGCTACCGTTTCGCTGGCAACATCCAGAACAAGCACAGGCAGATCGGGAATGCCGTGCCACCGCCCCTTGCCTATGCCCTCGGGAGGAAGCTCAAGCAAGCCATCGACGCCAAGCGTTGAGTGGCTTTTAACTTCACTGCATCGCCCTCATTTTTTGGTCGGTCCAAATAGGTTTAACTAAGCATTACAGTTTTCTATATTTTGTGAGCAATTGGACTCCTAAAATTAATTCTGGGATGGTTACATGGAT]
[+] EMBL AK108034 [AATGGGCTATTGAATATGAAGAACCTGCTGGGGATGCATTTGGTGAAAACCATCCAGAAGCTGCAGTATTTGTCGAAAACTGCAATGTGATTCTGAAGGCAATTATGGACAAGTGTGGTGATTCTGATGATTGCATCTCCACTTCTGAGGCTGCTGAACGAGCAGCTAAACTTTCTGAGGACAAGATTAAGAATCTGCCCGTGCCTGGCGAAGTAGAATTCATAAATGGTGGCCCTCCGTGTCAGGGTTTTTCTGGGATGAACAGATTCAATCAAAGTCCCTGGAGCAAAGTCCAGTGCGAGATGATCTTAGCATTCCTGTCATTTGCGGAGTATTTCCGTCCTAGATTCTTTCTCTTAGAAAATGTTAGGAACTTTGTCTCGTTCAACAAAGGACAGACCTTCAGATTGACACTGGCATCACTCCTGGAGATGGGATACCAGGTCCGATTTGGAATTTTAGAGGCAGGGGCTTATGGTGTTGCGCAGTCCAGGAAAAGGGCATTCATTTGGGCCGCTGCACCTGGAGAGACTCTTCCAGAGTGGCCTGAACCAATGCACGTCTTTGCTAGCCCTGAGCTGAAAATAACTCTACCTGATGGCAAGTTCTACGCCGCTGTCAAGAGCACCGCTGCAGGAGCCCCTTTCCGCTCAATTACAGTTCGAGATACAATTGGGGATCTACCAGCTGTGGAAAATGGCGCCGGCAAACCAACAATTCAGTACGGAAGCGGTCCTGTGTCTTGGTTCCAGAAGAAGATTAGAAGCGACATGGCTTCACTGAATGACCACATATCTAAAGAGATGAATGAGCTGAACCTCATAAGATGCAAGCACATTCCAAAGCGCCCAGGTTGCGACTGGCATGACCTGCCAGATGAAAAGGTGAAGCTGTCCACAGGGCAGATGGTGGACTTGATCCCTTGGTGCTTGCCCAACACAGCCAAAAGGCACAATCAGTGGAAAGGACTGTACGGTAGGTTGGACTGGGAGGGCAATTTCCCCACTTCTGTAACGGATCCTCAGCCAATGGGGAAGGTCGGCATGTGCTTCCATCCTGAGCAGGACAGGATCATTACTGTCCGTGAATGTGCTCGATCCCAGGGCTTCCCCGATAGCTACCGTTTCGCTGGCAACATCCAGAACAAGCACAGGCAGATCGGGAATGCCGTGCCACCGCCCCTTGCCTATGCCCTCGGGAGGAAGCTCAAGCAAGCCATCGACGCCAAGCGTTGAGTGGCTTTTAACTTCACTGCATCGCCCTCATTTTTTGGTCGGTCCAAATAGGTTTAACTAAGCATTACAGTTTTCTATATTTTGTGAGCAATTGGACTCCTAAAATTAATTCTGGGATGGTTACATGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4444#0 GTCCAAAGAGAACCGTCTTGCAACTCTTGACATTTTTGCTGGCTGTGGAGGTTTATCAGA 60
consensus_4444#1 ------------------------------------------------------------
consensus_4444#0 AGGACTGCAGCAAGCTGGTGTATCGTTTACAAAGTGGGCGATTGAATATGAGGAACCAGC 120
consensus_4444#1 --------------------------------AATGGGCTATTGAATATGAAGAACCTGC 28
* ***** *********** ***** **
consensus_4444#0 TGGTGAAGCATTTACCAAAAATCATCCAGAAGCTGCGGTGTTTGTGGATAACTGCAATGT 180
consensus_4444#1 TGGGGATGCATTTGGTGAAAACCATCCAGAAGCTGCAGTATTTGTCGAAAACTGCAATGT 88
*** ** ****** **** ************** ** ***** ** ***********
consensus_4444#0 GATTTTGAAGGCAATTATGGACAAATGTGGAGATGCTGATGATTGCATTTCAACTTCTGA 240
consensus_4444#1 GATTCTGAAGGCAATTATGGACAAGTGTGGTGATTCTGATGATTGCATCTCCACTTCTGA 148
**** ******************* ***** *** ************* ** ********
consensus_4444#0 GGCTGCTGAACAAGCAGCTAAATTTTCTCAGGACAATATTATGAACCTTCCTGTCCCTGG 300
consensus_4444#1 GGCTGCTGAACGAGCAGCTAAACTTTCTGAGGACAAGATTAAGAATCTGCCCGTGCCTGG 208
*********** ********** ***** ******* **** *** ** ** ** *****
consensus_4444#0 TGAAGTAGAATTCATAAATGGTGGTCCTCCATGTCAGGGCTTTTCTGGGATGAACAGATT 360
consensus_4444#1 CGAAGTAGAATTCATAAATGGTGGCCCTCCGTGTCAGGGTTTTTCTGGGATGAACAGATT 268
*********************** ***** ******** ********************
consensus_4444#0 TAACCAAAGCCCATGGAGTAAAGTTCAATGTGAGATGATTTTAGCATTCCTGTCTTTTGC 420
consensus_4444#1 CAATCAAAGTCCCTGGAGCAAAGTCCAGTGCGAGATGATCTTAGCATTCCTGTCATTTGC 328
** ***** ** ***** ***** ** ** ******** ************** *****
consensus_4444#0 TGAATATTTCCGCCCCAGATTCTTTCTTTTAGAAAATGTTAGGAACTTTGTTTCATTCAA 480
consensus_4444#1 GGAGTATTTCCGTCCTAGATTCTTTCTCTTAGAAAATGTTAGGAACTTTGTCTCGTTCAA 388
** ******** ** *********** *********************** ** *****
consensus_4444#0 CAAAGGACAGACATTTCGACTGACAGTTGCATCCCTTCTGGAGATGGGATACCAGGTCCG 540
consensus_4444#1 CAAAGGACAGACCTTCAGATTGACACTGGCATCACTCCTGGAGATGGGATACCAGGTCCG 448
************ ** ** ***** * ***** ** ***********************
consensus_4444#0 GTTTGGAATTTTAGAGGCAGGGACTTTTGGTGTTGCTCAGTCCAGGAAAAGAGCATTCAT 600
consensus_4444#1 ATTTGGAATTTTAGAGGCAGGGGCTTATGGTGTTGCGCAGTCCAGGAAAAGGGCATTCAT 508
********************* *** ********* ************** ********
consensus_4444#0 TTGGGCTGCTGCACCTGGAGAGACTCTGCCTGATTGGCCAGAACCAATGCATGTGTTTGC 660
consensus_4444#1 TTGGGCCGCTGCACCTGGAGAGACTCTTCCAGAGTGGCCTGAACCAATGCACGTCTTTGC 568
****** ******************** ** ** ***** *********** ** *****
consensus_4444#0 TAGCCCTGAGCTGAAAATAAATTTGCCTGATGGTAAA--CTATGCAGCTGCAAAAAGCAC 718
consensus_4444#1 TAGCCCTGAGCTGAAAATAACTCTACCTGATGGCAAGTTCTACGCCGCTGTCAAGAGCAC 628
******************** * * ******** ** *** ** **** ** *****
consensus_4444#0 TGCTGGTGGTGCTCCTTTCCGTGCAATAACAGTT--ATATACAATAGGCGATTTACCAAA 776
consensus_4444#1 CGCTGCAGGAGCCCCTTTCCGCTCAATTACAGTTCGAGATACAATTGGGGATCTACCAGC 688
**** ** ** ******** **** ****** * ******* ** *** *****
consensus_4444#0 GGTGGAGAATGGCGCCAGTAAACTCCTACTTGAGTACGGTGGCGAACCCATCTCCTGGTT 836
consensus_4444#1 TGTGGAAAATGGCGCCGGCAAACCAACAATTCAGTACGGAAGCGGTCCTGTGTCTTGGTT 748
***** ********* * **** * ** ******* *** ** * ** *****
consensus_4444#0 CCAGAAGAAGATTAGAGGGAACACGATCGCGCTGAATGATCACATATCTAAGGAGATGAA 896
consensus_4444#1 CCAGAAGAAGATTAGAAGCGACATGGCTTCACTGAATGACCACATATCTAAAGAGATGAA 808
**************** * *** * * ******** *********** ********
consensus_4444#0 TGAACTGAACCTCATCAGATGCCAACGCATTCCAAAGCGGCCTGGTTGTGATTGGCATGA 956
consensus_4444#1 TGAGCTGAACCTCATAAGATGCAAGCACATTCCAAAGCGCCCAGGTTGCGACTGGCATGA 868
*** *********** ****** * * ************ ** ***** ** ********
consensus_4444#0 CCTACCAGATGAGAAGGTGAAACTATCATCTGGCCAACTGGTGGACCTGATCCCTTGGTG 1016
consensus_4444#1 CCTGCCAGATGAAAAGGTGAAGCTGTCCACAGGGCAGATGGTGGACTTGATCCCTTGGTG 928
*** ******** ******** ** ** * ** ** ******** *************
consensus_4444#0 CCTGCCTAACACAGCTAAAAGGCACAACCAGTGGAAAGGGCTTTATGGTAGGCTGGATTG 1076
consensus_4444#1 CTTGCCCAACACAGCCAAAAGGCACAATCAGTGGAAAGGACTGTACGGTAGGTTGGACTG 988
* **** ******** *********** *********** ** ** ****** **** **
consensus_4444#0 GGAGGGCAATTTCCCTACTTCTGTGACAGACCCCCAGCCAATGGGCAAGGTTGGCATGTG 1136
consensus_4444#1 GGAGGGCAATTTCCCCACTTCTGTAACGGATCCTCAGCCAATGGGGAAGGTCGGCATGTG 1048
*************** ******** ** ** ** *********** ***** ********
consensus_4444#0 CTTCCACCCTGACCAGGATAGGATCATCACAGTCCGTGAATGTGCGCGATCTCAGGGCTT 1196
consensus_4444#1 CTTCCATCCTGAGCAGGACAGGATCATTACTGTCCGTGAATGTGCTCGATCCCAGGGCTT 1108
****** ***** ***** ******** ** ************** ***** ********
consensus_4444#0 TCCTGACAACTACCAGTTCGCGGGCAACATCCAGAGCAAGCACAGGCAGATTGGCAATGC 1256
consensus_4444#1 CCCCGATAGCTACCGTTTCGCTGGCAACATCCAGAACAAGCACAGGCAGATCGGGAATGC 1168
** ** * ***** ***** ************* *************** ** *****
consensus_4444#0 GGTGCCTCCACCTCTTGCCTTCGCCCTCGGGAGGAAACTGAAGGAAGCTGTTGATGCAAA 1316
consensus_4444#1 CGTGCCACCGCCCCTTGCCTATGCCCTCGGGAGGAAGCTCAAGCAAGCCATCGACGCCAA 1228
***** ** ** ******* ************** ** *** **** * ** ** **
consensus_4444#0 GCGTCAGTAGGTGCTCAGAGTCCTTCTCCGATGATCGAGGGAGATGATTCTCCCCTGAAA 1376
consensus_4444#1 GCGTTGAGTGGCTTTTAA----CTTCACTGC--ATCGCCCTCATT--TTTTGGTCGGTCC 1280
**** ** * * **** * * **** * ** * * *
consensus_4444#0 AGAAACAAACAACCAAACATATGAGTGTACTTATTTTAATTGTGCGCTGCATTTAACTTT 1436
consensus_4444#1 AAATAGGTTTAACTAAGCAT-----TACAGTTTTCTATATTTTGTGAGCAATTGGACTCC 1335
* * * *** ** *** * * ** * * *** ** * *** ***
consensus_4444#0 GTGTGTTGATTAAGATTTTAGTCATATAGATCCTTGGTAACCTTGTACATTTTAGAGGTT 1496
consensus_4444#1 TAAAATTAATTCTGGGAT-GGTTACATGGAT----------------------------- 1365
** *** * * ** * ** ***
consensus_4444#0 GTGTTGTGATTGATACCCTTGATTCAGGGGTATGATTTAGTGGCTGTATTCAGATATTTA 1556
consensus_4444#1 ------------------------------------------------------------
consensus_4444#0 AACAAAATAATACTAGTTAGTGATGG 1582
consensus_4444#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||