cluster # 4453

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Oryza sativa
cluster # 4453 cluster # 4453 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4453#0 length = 1434 sequences # 2

consensus_4453#1 length = 245 sequences # 1

consensusID : consensus_4453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1434
fasta sequence

                              [CCCCTCGTTTCTCTCTCCCTCTCTTGATCTGTGTGCGTCTTGCGCGCGTTGTTTGGGCGAGAGCTCTGGCGGCTGCGCGCGCGGGTGTTCTCTTCGTGGCGAGATCGGCGTTGATGCGCGGCGCGGCGTGGCGGTGGTGGGCGTGCGTGCGATGAGGAAGCTGTGCCCGAACCTGGACCGCAACGTCGTCGGCTCGCCGCTCATCCCCTGCCCCGTCCCCCACGACCGCGCCTTCAGCCGCTCCATCCGCGACTCCTCCATCGTAAGCCACCGCTCCCCTGCCCGCGTCGCGCGCGCGCGCGTCCATGCATGCTCCGCTGCCGGTTGGTTCTTGACGCGTTCATCCCCCTCCTCGTGTGTGTGCGCGCGTGTGTGGTCAGCAAGCGTCGACGGCCAAGTACATCATGCAGCAGTACATCGCGGCGACGGGCGGGCAGGCGGCGTTGCAGGGGCTGCAGAGCATGTACGCCGTGGGAAAGGTGCGGATGTGCGCGTCGGAGTTCCACCTCGGCGACCAGAACGTGACCGCCGCGCAGGGCCGCGCCGAGGTCGGCGGGTTCGTGCTCTGGCAGAAGTGCCCCGAGGTCTGGTACTTCGAGCTCATCATGGCCGGCCACAAGATGAGCGCCGGCAGCGACGGCAAGGTCGCCTGGCGCCAGTCCGCCGCCGAGAACTCCCACGCCTCCCGCGGCCCTCCCCGCCCCCTCCGCCGCTCCCTCCAGGGGCTGGACCCGAGGTCGATCGCGAACCTGTTCTCCGACGCGGTGTGCATCGGCGAGAAGATCATCACCGGGGAGGAGTGCTTCATCCTGAAGCTGGAGGCGAGCGCGGCGACGCTGCGCGCCCGGAGCGCGGCGGCGTTCGACATCATCCACCACACGGTGTGGGGCTACTTCAGCCAGCGCACGGGCCTGCTCATCCAGTTGGAGGACTCGCACCTCCTCCGCATGAAGTCCGGCAAGGGCGCCCGCCGCAGCGAGAACATCTTCTGGGAGACCACCATGGAGTCCACCATCTCCGACTACCGCCACATCGATGGCATCAACATCGCCCACGGCGGCCACACCGCCGTCACGCTCTTCCGCTACGGCGAGGGCTCCGTCAACCACAAGCGGAAGCTGGAGGAGACGTGGACGGTGGAGGAGGCCGACTTCAACCTGTACGGTCTCACCACCGACTACTTCCTGCCGCCCTCCGACCTCAAGAAGGACATCGACGAGAAGCGCGCCGGCTGACCCGCCCGGCTAGAATAAGATCCCATGCAGGCCTGAATTTTGGTAGAGGTGGCCATAGGTGTATGGGGTTTGTTCTTGATTCCTTAACATTTTTTTTCTTCTTCTTTTCTTGTCTAATTGCAAAGTAATTCAACCATGATCCAGGAATAAAATTACTTAAAAGGGTTCATTTTTTTAGGGCNAAAAAAAAAAAAAAAAA]

[+] EMBL AK069980             [CCCCTCGTTTCTCTCTCCCTCTCTTGATCTGTGTGCGTCTTGCGCGCGTTGTTTGGGCGAGAGCTCTGGCGGCTGCGCGCGCGGGTGTTCTCTTCGTGGCGAGATCGGCGTTGATGCGCGGCGCGGCGTGGCGGTGGTGGGCGTGCGTGCGATGAGGAAGCTGTGCCCGAACCTGGACCGCAACGTCGTCGGCTCGCCGCTCATCCCCTGCCCCGTCCCCCACGACCGCGCCTTCAGCCGCTCCATCCGCGACTCCTCCATCGTAAGCCACCGCTCCCCTGCCCGCGTCGCGCGCGCGCGCGTCCATGCATGCTCCGCTGCCGGTTGGTTCTTGACGCGTTCATCCCCCTCCTCGTGTGTGTGCGCGCGTGTGTGGTCAGCAAGCGTCGACGGCCAAGTACATCATGCAGCAGTACATCGCGGCGACGGGCGGGCAGGCGGCGTTGCAGGGGCTGCAGAGCATGTACGCCGTGGGAAAGGTGCGGATGTGCGCGTCGGAGTTCCACCTCGGCGACCAGAACGTGACCGCCGCGCAGGGCCGCGCCGAGGTCGGCGGGTTCGTGCTCTGGCAGAAGTGCCCCGAGGTCTGGTACTTCGAGCTCATCATGGCCGGCCACAAGATGAGCGCCGGCAGCGACGGCAAGGTCGCCTGGCGCCAGTCCGCCGCCGAGAACTCCCACGCCTCCCGCGGCCCTCCCCGCCCCCTCCGCCGCTCCCTCCAGGGGCTGGACCCGAGGTCGATCGCGAACCTGTTCTCCGACGCGGTGTGCATCGGCGAGAAGATCATCACCGGGGAGGAGTGCTTCATCCTGAAGCTGGAGGCGAGCGCGGCGACGCTGCGCGCCCGGAGCGCGGCGGCGTTCGACATCATCCACCACACGGTGTGGGGCTACTTCAGCCAGCGCACGGGCCTGCTCATCCAGTTGGAGGACTCGCACCTCCTCCGCATGAAGTCCGGCAAGGGCGCCCGCCGCAGCGAGAACATCTTCTGGGAGACCACCATGGAGTCCACCATCTCCGACTACCGCCACATCGATGGCATCAACATCGCCCACGGCGGCCACACCGCCGTCACGCTCTTCCGCTACGGCGAGGGCTCCGTCAACCACAAGCGGAAGCTGGAGGAGACGTGGACGGTGGAGGAGGCCGACTTCAACCTGTACGGTCTCACCACCGACTACTTCCTGCCGCCCTCCGACCTCAAGAAGGACATCGACGAGAAGCGCGCCGGCTGACCCGCCCGGCTAGAATAAGATCCCATGCAGGCCTGAATTTTGGTAGAGGTGGCCATAGGTGTATGGGGTTTGTTCTTGATTCCTTAACATTTTTTTTCTTCTTCTTTTCTTGTCTAATTGCAAAGTAATTCAACCATGATCCAGGAATAAAATTACTTAAAAGGGTTCA                              ]
[+] EMBL AU222574             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCCTGCCGCCCTCCGNCCTCAAGAAGGACATCGACGANAAGCGCGCCGGCTGACCCGCCCGGCTAGAATAAGATCCCATGCAGGCCTGAATTTTGGTANAGGTGGCCATAGGNGTATGGGGTTTGTTCTTGATTCCTTAACATTTTTTTTCTTCTTCTTTTCTTGGCTAATTGCAAAGTAATTCAACCATGATCCAGGAATAAAATTACTTAAAAGGGTTCATTTTTTTAGGGCNAAAAAAAAAAAAAAAAA]




>consensus_4453#0
CCCCTCGTTTCTCTCTCCCTCTCTTGATCTGTGTGCGTCTTGCGCGCGTTGTTTGGGCGA
GAGCTCTGGCGGCTGCGCGCGCGGGTGTTCTCTTCGTGGCGAGATCGGCGTTGATGCGCG
GCGCGGCGTGGCGGTGGTGGGCGTGCGTGCGATGAGGAAGCTGTGCCCGAACCTGGACCG
CAACGTCGTCGGCTCGCCGCTCATCCCCTGCCCCGTCCCCCACGACCGCGCCTTCAGCCG
CTCCATCCGCGACTCCTCCATCGTAAGCCACCGCTCCCCTGCCCGCGTCGCGCGCGCGCG
CGTCCATGCATGCTCCGCTGCCGGTTGGTTCTTGACGCGTTCATCCCCCTCCTCGTGTGT
GTGCGCGCGTGTGTGGTCAGCAAGCGTCGACGGCCAAGTACATCATGCAGCAGTACATCG
CGGCGACGGGCGGGCAGGCGGCGTTGCAGGGGCTGCAGAGCATGTACGCCGTGGGAAAGG
TGCGGATGTGCGCGTCGGAGTTCCACCTCGGCGACCAGAACGTGACCGCCGCGCAGGGCC
GCGCCGAGGTCGGCGGGTTCGTGCTCTGGCAGAAGTGCCCCGAGGTCTGGTACTTCGAGC
TCATCATGGCCGGCCACAAGATGAGCGCCGGCAGCGACGGCAAGGTCGCCTGGCGCCAGT
CCGCCGCCGAGAACTCCCACGCCTCCCGCGGCCCTCCCCGCCCCCTCCGCCGCTCCCTCC
AGGGGCTGGACCCGAGGTCGATCGCGAACCTGTTCTCCGACGCGGTGTGCATCGGCGAGA
AGATCATCACCGGGGAGGAGTGCTTCATCCTGAAGCTGGAGGCGAGCGCGGCGACGCTGC
GCGCCCGGAGCGCGGCGGCGTTCGACATCATCCACCACACGGTGTGGGGCTACTTCAGCC
AGCGCACGGGCCTGCTCATCCAGTTGGAGGACTCGCACCTCCTCCGCATGAAGTCCGGCA
AGGGCGCCCGCCGCAGCGAGAACATCTTCTGGGAGACCACCATGGAGTCCACCATCTCCG
ACTACCGCCACATCGATGGCATCAACATCGCCCACGGCGGCCACACCGCCGTCACGCTCT
TCCGCTACGGCGAGGGCTCCGTCAACCACAAGCGGAAGCTGGAGGAGACGTGGACGGTGG
AGGAGGCCGACTTCAACCTGTACGGTCTCACCACCGACTACTTCCTGCCGCCCTCCGACC
TCAAGAAGGACATCGACGAGAAGCGCGCCGGCTGACCCGCCCGGCTAGAATAAGATCCCA
TGCAGGCCTGAATTTTGGTAGAGGTGGCCATAGGTGTATGGGGTTTGTTCTTGATTCCTT
AACATTTTTTTTCTTCTTCTTTTCTTGTCTAATTGCAAAGTAATTCAACCATGATCCAGG
AATAAAATTACTTAAAAGGGTTCATTTTTTTAGGGCNAAAAAAAAAAAAAAAAA

consensusID : consensus_4453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [CTCTCCCTCTCTTGATCTGTGTGCGTCTTGCGCGCGTTGTTTGGGCGAGAGCTCTGGCGGCTGCGCGCGCGGGTGTTCTCTTCGTGGCGAGATCGGCGTTGATGCGCGGCGCGGCGTGGCGGTGGTGGGCGTGCGTTCGATGAGGAAGCTGTGCCCGAACCTGGACCGCGACGACTCGCTGGACACCGTGCTGGAGGTGCCCATCCCCGATGAGATGCTCATCAACGCGCAAGGCACCGANAAGC]

[+] EMBL C72331               [CTCTCCCTCTCTTGATCTGTGTGCGTCTTGCGCGCGTTGTTTGGGCGAGAGCTCTGGCGGCTGCGCGCGCGGGTGTTCTCTTCGTGGCGAGATCGGCGTTGATGCGCGGCGCGGCGTGGCGGTGGTGGGCGTGCGTTCGATGAGGAAGCTGTGCCCGAACCTGGACCGCGACGACTCGCTGGACACCGTGCTGGAGGTGCCCATCCCCGATGAGATGCTCATCAACGCGCAAGGCACCGANAAGC]




>consensus_4453#1
CTCTCCCTCTCTTGATCTGTGTGCGTCTTGCGCGCGTTGTTTGGGCGAGAGCTCTGGCGG
CTGCGCGCGCGGGTGTTCTCTTCGTGGCGAGATCGGCGTTGATGCGCGGCGCGGCGTGGC
GGTGGTGGGCGTGCGTTCGATGAGGAAGCTGTGCCCGAACCTGGACCGCGACGACTCGCT
GGACACCGTGCTGGAGGTGCCCATCCCCGATGAGATGCTCATCAACGCGCAAGGCACCGA
NAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4453#0      CCCCTCGTTTCTCTCTCCCTCTCTTGATCTGTGTGCGTCTTGCGCGCGTTGTTTGGGCGA 60
consensus_4453#1      ------------CTCTCCCTCTCTTGATCTGTGTGCGTCTTGCGCGCGTTGTTTGGGCGA 48
                                  ************************************************

consensus_4453#0      GAGCTCTGGCGGCTGCGCGCGCGGGTGTTCTCTTCGTGGCGAGATCGGCGTTGATGCGCG 120
consensus_4453#1      GAGCTCTGGCGGCTGCGCGCGCGGGTGTTCTCTTCGTGGCGAGATCGGCGTTGATGCGCG 108
                      ************************************************************

consensus_4453#0      GCGCGGCGTGGCGGTGGTGGGCGTGCGTGCGATGAGGAAGCTGTGCCCGAACCTGGACCG 180
consensus_4453#1      GCGCGGCGTGGCGGTGGTGGGCGTGCGTTCGATGAGGAAGCTGTGCCCGAACCTGGACCG 168
                      **************************** *******************************

consensus_4453#0      CAACG--TCGTCGGCTCGCCGCTCATCCCCTGCCCCGTCCCCCACGACCGCGCCTTCAGC 238
consensus_4453#1      CGACGACTCGCTGGA-CACCGTGCTGGAGGTGCCC-ATCCCCGATGAG-ATGCTCATCAA 225
                      * ***  ***  **  * ***  *      *****  ***** * **    **       

consensus_4453#0      CGCTCCATCCGCGACTCCTCCATCGTAAGCCACCGCTCCCCTGCCCGCGTCGCGCGCGCG 298
consensus_4453#1      CGCGCAAGGCACCGANAAGC---------------------------------------- 245
                      *** * *  * *       *                                        

consensus_4453#0      CGCGTCCATGCATGCTCCGCTGCCGGTTGGTTCTTGACGCGTTCATCCCCCTCCTCGTGT 358
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      GTGTGCGCGCGTGTGTGGTCAGCAAGCGTCGACGGCCAAGTACATCATGCAGCAGTACAT 418
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      CGCGGCGACGGGCGGGCAGGCGGCGTTGCAGGGGCTGCAGAGCATGTACGCCGTGGGAAA 478
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      GGTGCGGATGTGCGCGTCGGAGTTCCACCTCGGCGACCAGAACGTGACCGCCGCGCAGGG 538
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      CCGCGCCGAGGTCGGCGGGTTCGTGCTCTGGCAGAAGTGCCCCGAGGTCTGGTACTTCGA 598
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      GCTCATCATGGCCGGCCACAAGATGAGCGCCGGCAGCGACGGCAAGGTCGCCTGGCGCCA 658
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      GTCCGCCGCCGAGAACTCCCACGCCTCCCGCGGCCCTCCCCGCCCCCTCCGCCGCTCCCT 718
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      CCAGGGGCTGGACCCGAGGTCGATCGCGAACCTGTTCTCCGACGCGGTGTGCATCGGCGA 778
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      GAAGATCATCACCGGGGAGGAGTGCTTCATCCTGAAGCTGGAGGCGAGCGCGGCGACGCT 838
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      GCGCGCCCGGAGCGCGGCGGCGTTCGACATCATCCACCACACGGTGTGGGGCTACTTCAG 898
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      CCAGCGCACGGGCCTGCTCATCCAGTTGGAGGACTCGCACCTCCTCCGCATGAAGTCCGG 958
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      CAAGGGCGCCCGCCGCAGCGAGAACATCTTCTGGGAGACCACCATGGAGTCCACCATCTC 1018
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      CGACTACCGCCACATCGATGGCATCAACATCGCCCACGGCGGCCACACCGCCGTCACGCT 1078
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      CTTCCGCTACGGCGAGGGCTCCGTCAACCACAAGCGGAAGCTGGAGGAGACGTGGACGGT 1138
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      GGAGGAGGCCGACTTCAACCTGTACGGTCTCACCACCGACTACTTCCTGCCGCCCTCCGA 1198
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      CCTCAAGAAGGACATCGACGAGAAGCGCGCCGGCTGACCCGCCCGGCTAGAATAAGATCC 1258
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      CATGCAGGCCTGAATTTTGGTAGAGGTGGCCATAGGTGTATGGGGTTTGTTCTTGATTCC 1318
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      TTAACATTTTTTTTCTTCTTCTTTTCTTGTCTAATTGCAAAGTAATTCAACCATGATCCA 1378
consensus_4453#1      ------------------------------------------------------------
                                                                                  

consensus_4453#0      GGAATAAAATTACTTAAAAGGGTTCATTTTTTTAGGGCNAAAAAAAAAAAAAAAAA 1434
consensus_4453#1      --------------------------------------------------------