These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1551 fasta sequence [GTGNCNANAGGGCAAGCAGCTATATATGTCATGCAAGCAAGGCCAAGGTGAGCAGACATCATCANTGGCGGGCNCGGGCAAGGGCAAGGNCGAGGTCGAGGGCATGGAGCAGAAGCTGGAGAAGCTGATGTCGGCNTTTCACGACCATCAGGAAGGCAACAAGGCGGTGAGGCATCANAAGGAGCTGGAGGAGCTCTTCACCTTCCTCAGGGAGCACGAGGCCGCCTTCTCGCAGCTTCCAGGGGACAAGAAGGACGACCTCGACGCCCTCCTCCGCAACATCGAGGGCGTCCTTGAGCTGTGCAAGAATCAGGAGGAGAAGAAGAAGAAGACGACGAACAAGATGGGCGACTGCATCCCCTTCAAGTCGTCGTCCAGGCCGCCTGCTGACCACACGTCGTCGACGTCGGTGGTGGCGCCGTTGCTGATGCAGGCCAGGGACATTCTCGGCGACTCATCATCATCTGCTCCTGCAGCTGCAGGGCCTAATAAGAAGGAGGTGCTGTACGAGTGGACGACGAGCTACGTCGACGAGAAGAGGCTATACGGGTGGGACGACGAGGCCACGGAGGTGGCGGACGCCCTCGCCGGCCCCGAGGAAGACGACGACGAGCTGTTCAGGGCGGCGGGCATCTTCGGCATCCACGGAAGCGGCAAGACGGCGCTGGCCCAGAAGGTGTTCGTCCACGACCGCATCAAGGACACCTTCCTGCTCCGCCTCTGGGTGTGCGTCGGCCCGACGCCGCCGGACGATGACAAGCAACAGCAGTACGAGGTGAAGTTTAGCCTCCTCTACCGCATGCTCGACAACCTCGGCCTCGACACCTATAAGGTGGAGGAAGTCGTCAACGGCTCGGAAGCCGTCAAGAAGCACAGCGGCGACAGCGACGCCGCCAAGGAGTCCAAGATCGGCGTGCTGCTCTTCATCCTGCACGTGGCGCTGGCCAAGACCTCCTACCTCATCGTGTTGGACGACATCCGGGCGTACGACCCCTGGTACACCAACCTGGCGCTGCCGCCGCCGCCCCACGGCGAGTGGAGCGACCGCCTCGCCTACGGCCTGCCCAAGCTGAACAAGAGCGCCGTGCTCGTCACCTGCCGCAAGGAGGAGCACGCCAGGGCCATGGTGCGCACCGGCCGCGTCTTCCACCCGCCGCTCCTCGCCGTCGCCGACGCCTGGAAGCTCTTCGAACGCGAGTACCTGCAGGAGGCCGAGAAGAAACAAGTCGGGTACAACGTCAAGGACGACGTGCTGTACAATGATCTCAAGGTGGTGCAGGAGGGGATGGTCGGCAAGTGCCTCGGCCTGCCGGTGGCCATCCTCGAGGCCGCCAAGGGCTTCGCCCAGTACTGCACCTACGTTGATGACGACGATGCCAAAACTACTCAACCCACTACTGCTAAAGGTGCCGACGCCGGCGACCCTGCTCATGCTGCCGCCTAGATCCACTCTCATCCATCCAAACACTATACTTATACATATATTCCGTAATTTAATGTTTTGCTGCACACGCATGCTACTCTCGCAATGCCATATATATCGTCCATCAT] [+] EMBL OSS2938A [GTGNCNANAGGGCAAGCAGCTATATATGTCATGCAAGCAAGGCCAAGGTGAGCAGACATCATCANTGGCGGGCNCGGGCAAGGGCAAGGNCGAGGTCGAGGGCATGGAGCAGAAGCTGGAGAAGCTGATGTCGGCNTTTCACGACCATCAGGAAGGCAACAAGGCGGTGAGGCATCANAAGGAGCTGGAGGAGCTCTTCACCTTCCTCAGGGAGCACGAGGCCGCCTTCTCGCAGCTTCCA ] [+] EMBL AK059175 [ GGCGGGCGCGGGCAAGGGCAAGGGCGAGGTCGAGGGCATGGAGCAGAAGCTGGAGAAGCTGATGTCGGCGTTTCACGACCATCAGGAAGGCAACAAGGCGGTGAGGCATCAGAAGGAGCTGGAGGAGCTCTTCAGCTTCCTCAGGGAGCACGAGGCCGCCTTCTCGCAGCTTCCAGGGGACAAGAAGGACGACCTCGACGCCCTCCTCCGCAACATCGAGGGCGTCCTTGAGCTGTGCAAGAATCAGGAGGAGAAGAAGAAGAAGACGACGAACAAGATGGGCGACTGCATCCCCTTCAAGTCGTCGTCCAGGCCGCCTGCTGACCACACGTCGTCGACGTCGGTGGTGGCGCCGTTGCTGATGCAGGCCAGGGACATTCTCGGCGACTCATCATCATCTGCTCCTGCAGCTGCAGGGCCTAATAAGAAGGAGGTGCTGTACGAGTGGACGACGAGCTACGTCGACGAGAAGAGGCTATACGGGTGGGACGACGAGGCCACGGAGGTGGCGGACGCCCTCGCCGGCCCCGAGGAAGACGACGACGAGCTGTTCAGGGCGGCGGGCATCTTCGGCATCCACGGAAGCGGCAAGACGGCGCTGGCCCAGAAGGTGTTCGTCCACGACCGCATCAAGGACACCTTCCTGCTCCGCCTCTGGGTGTGCGTCGGCCCGACGCCGCCGGACGATGACAAGCAACAGCAGTACGAGGTGAAGTTTAGCCTCCTCTACCGCATGCTCGACAACCTCGGCCTCGACACCTATAAGGTGGAGGAAGTCGTCAACGGCTCGGAAGCCGTCAAGAAGCACAGCGGCGACAGCGACGCCGCCAAGGAGTCCAAGATCGGCGTGCTGCTCTTCATCCTGCACGTGGCGCTGGCCAAGACCTCCTACCTCATCGTGTTGGACGACATCCGGGCGTACGACCCCTGGTACACCAACCTGGCGCTGCCGCCGCCGCCCCACGGCGAGTGGAGCGACCGCCTCGCCTACGGCCTGCCCAAGCTGAACAAGAGCGCCGTGCTCGTCACCTGCCGCAAGGAGGAGCACGCCAGGGCCATGGTGCGCACCGGCCGCGTCTTCCACCCGCCGCTCCTCGCCGTCGCCGACGCCTGGAAGCTCTTCGAACGCGAGTACCTGCAGGAGGCCGAGAAGAAACAAGTCGGGTACAACGTCAAGGACGACGTGCTGTACAATGATCTCAAGGTGGTGCAGGAGGGGATGGTCGGCAAGTGCCTCGGCCTGCCGGTGGCCATCCTCGAGGCCGCCAAGGGCTTCGCCCAGTACTGCACCTACGTTGATGACGACGATGCCAAAACTACTCAACCCACTACTGCTAAAGGTGCCGACGCCGGCGACCCTGCTCATGCTGCCGCCTAGATCCACTCTCATCCATCCAAACACTATACTTATACATATATTCCGTAATTTAATGTTTTGCTGCACACGCATGCTACTCTCGCAATGCCATATATATCGTCCATCAT] consensusID : consensus_4457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [CGTAATTTAGGNTTTTGNTGCACACGCATGCTACTCTCGCAATGCCAGTATATATCGTCCATCATTTGGTCTGCCTAATATAATGAATGTAAGGTACAGGTNGANTTTTCGTNGGTGTATTTAATTGTGTGTCTGTGTACTCCTACGTACTGTCTANNNATTTTTCACGGNGCANATCCNNNTNAACATTAGTGCAAAAAAAAAA] [+] EMBL AU108342 [CGTAATTTAGGNTTTTGNTGCACACGCATGCTACTCTCGCAATGCCAGTATATATCGTCCATCATTTGGTCTGCCTAATATAATGAATGTAAGGTACAGGTNGANTTTTCGTNGGTGTATTTAATTGTGTGTCTGTGTACTCCTACGTACTGTCTANNNATTTTTCACGGNGCANATCCNNNTNAACATTAGTGCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4457#0 GTGNCNANAGGGCAAGCAGCTATATATGTCATGCAAGCAAGGCCAAGGTGAGCAGACATC 60 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 ATCANTGGCGGGCNCGGGCAAGGGCAAGGNCGAGGTCGAGGGCATGGAGCAGAAGCTGGA 120 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 GAAGCTGATGTCGGCNTTTCACGACCATCAGGAAGGCAACAAGGCGGTGAGGCATCANAA 180 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 GGAGCTGGAGGAGCTCTTCACCTTCCTCAGGGAGCACGAGGCCGCCTTCTCGCAGCTTCC 240 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 AGGGGACAAGAAGGACGACCTCGACGCCCTCCTCCGCAACATCGAGGGCGTCCTTGAGCT 300 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 GTGCAAGAATCAGGAGGAGAAGAAGAAGAAGACGACGAACAAGATGGGCGACTGCATCCC 360 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 CTTCAAGTCGTCGTCCAGGCCGCCTGCTGACCACACGTCGTCGACGTCGGTGGTGGCGCC 420 consensus_4457#1 --------------------------------------------CGTAATTTAGGNTTTT 16 *** * * consensus_4457#0 GTTGCTGATGCAGGCCAGGGACATTCTCGGCGACTCATCATCATCTGCTCCTGCAGCTGC 480 consensus_4457#1 GNTGCACACGCATGCTACTCTCGCAAT--GCCAGTATATATCGTCCATCATTTGGTCTGC 74 * *** * *** ** * * * ** * * *** ** * **** consensus_4457#0 AGGGCCTAATAAGAAGGAGGTGCTGTACGAGTGGACGACGAGCTACGTCGACGAGAAGAG 540 consensus_4457#1 CTAATATAATGAATGTAAGGTACAGGTNGANTTTTCGTNGGTGTATTTAATTGTGTGTCT 134 **** * **** * * ** * ** * ** * * * consensus_4457#0 GC-TATACGGGTGGGACGACGAGGCCACGGAGGTGGCGGACGCCCTCGCCGGCCCCGAGG 599 consensus_4457#1 GTGTACTCCTACGTACTGTCTANNNATTTTTCACGGNGCANATCCNNNTNAACATTAGTG 194 * ** * * * * * ** * * ** * * consensus_4457#0 AAGACGACGACGAGCTGTTCAGGGCGGCGGGCATCTTCGGCATCCACGGAAGCGGCAAGA 659 consensus_4457#1 CAAAAAAAAAA------------------------------------------------- 205 * * * * consensus_4457#0 CGGCGCTGGCCCAGAAGGTGTTCGTCCACGACCGCATCAAGGACACCTTCCTGCTCCGCC 719 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 TCTGGGTGTGCGTCGGCCCGACGCCGCCGGACGATGACAAGCAACAGCAGTACGAGGTGA 779 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 AGTTTAGCCTCCTCTACCGCATGCTCGACAACCTCGGCCTCGACACCTATAAGGTGGAGG 839 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 AAGTCGTCAACGGCTCGGAAGCCGTCAAGAAGCACAGCGGCGACAGCGACGCCGCCAAGG 899 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 AGTCCAAGATCGGCGTGCTGCTCTTCATCCTGCACGTGGCGCTGGCCAAGACCTCCTACC 959 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 TCATCGTGTTGGACGACATCCGGGCGTACGACCCCTGGTACACCAACCTGGCGCTGCCGC 1019 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 CGCCGCCCCACGGCGAGTGGAGCGACCGCCTCGCCTACGGCCTGCCCAAGCTGAACAAGA 1079 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 GCGCCGTGCTCGTCACCTGCCGCAAGGAGGAGCACGCCAGGGCCATGGTGCGCACCGGCC 1139 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 GCGTCTTCCACCCGCCGCTCCTCGCCGTCGCCGACGCCTGGAAGCTCTTCGAACGCGAGT 1199 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 ACCTGCAGGAGGCCGAGAAGAAACAAGTCGGGTACAACGTCAAGGACGACGTGCTGTACA 1259 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 ATGATCTCAAGGTGGTGCAGGAGGGGATGGTCGGCAAGTGCCTCGGCCTGCCGGTGGCCA 1319 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 TCCTCGAGGCCGCCAAGGGCTTCGCCCAGTACTGCACCTACGTTGATGACGACGATGCCA 1379 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 AAACTACTCAACCCACTACTGCTAAAGGTGCCGACGCCGGCGACCCTGCTCATGCTGCCG 1439 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 CCTAGATCCACTCTCATCCATCCAAACACTATACTTATACATATATTCCGTAATTTAATG 1499 consensus_4457#1 ------------------------------------------------------------ consensus_4457#0 TTTTGCTGCACACGCATGCTACTCTCGCAATGCCATATATATCGTCCATCAT 1551 consensus_4457#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||