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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1551 fasta sequence
[GTGNCNANAGGGCAAGCAGCTATATATGTCATGCAAGCAAGGCCAAGGTGAGCAGACATCATCANTGGCGGGCNCGGGCAAGGGCAAGGNCGAGGTCGAGGGCATGGAGCAGAAGCTGGAGAAGCTGATGTCGGCNTTTCACGACCATCAGGAAGGCAACAAGGCGGTGAGGCATCANAAGGAGCTGGAGGAGCTCTTCACCTTCCTCAGGGAGCACGAGGCCGCCTTCTCGCAGCTTCCAGGGGACAAGAAGGACGACCTCGACGCCCTCCTCCGCAACATCGAGGGCGTCCTTGAGCTGTGCAAGAATCAGGAGGAGAAGAAGAAGAAGACGACGAACAAGATGGGCGACTGCATCCCCTTCAAGTCGTCGTCCAGGCCGCCTGCTGACCACACGTCGTCGACGTCGGTGGTGGCGCCGTTGCTGATGCAGGCCAGGGACATTCTCGGCGACTCATCATCATCTGCTCCTGCAGCTGCAGGGCCTAATAAGAAGGAGGTGCTGTACGAGTGGACGACGAGCTACGTCGACGAGAAGAGGCTATACGGGTGGGACGACGAGGCCACGGAGGTGGCGGACGCCCTCGCCGGCCCCGAGGAAGACGACGACGAGCTGTTCAGGGCGGCGGGCATCTTCGGCATCCACGGAAGCGGCAAGACGGCGCTGGCCCAGAAGGTGTTCGTCCACGACCGCATCAAGGACACCTTCCTGCTCCGCCTCTGGGTGTGCGTCGGCCCGACGCCGCCGGACGATGACAAGCAACAGCAGTACGAGGTGAAGTTTAGCCTCCTCTACCGCATGCTCGACAACCTCGGCCTCGACACCTATAAGGTGGAGGAAGTCGTCAACGGCTCGGAAGCCGTCAAGAAGCACAGCGGCGACAGCGACGCCGCCAAGGAGTCCAAGATCGGCGTGCTGCTCTTCATCCTGCACGTGGCGCTGGCCAAGACCTCCTACCTCATCGTGTTGGACGACATCCGGGCGTACGACCCCTGGTACACCAACCTGGCGCTGCCGCCGCCGCCCCACGGCGAGTGGAGCGACCGCCTCGCCTACGGCCTGCCCAAGCTGAACAAGAGCGCCGTGCTCGTCACCTGCCGCAAGGAGGAGCACGCCAGGGCCATGGTGCGCACCGGCCGCGTCTTCCACCCGCCGCTCCTCGCCGTCGCCGACGCCTGGAAGCTCTTCGAACGCGAGTACCTGCAGGAGGCCGAGAAGAAACAAGTCGGGTACAACGTCAAGGACGACGTGCTGTACAATGATCTCAAGGTGGTGCAGGAGGGGATGGTCGGCAAGTGCCTCGGCCTGCCGGTGGCCATCCTCGAGGCCGCCAAGGGCTTCGCCCAGTACTGCACCTACGTTGATGACGACGATGCCAAAACTACTCAACCCACTACTGCTAAAGGTGCCGACGCCGGCGACCCTGCTCATGCTGCCGCCTAGATCCACTCTCATCCATCCAAACACTATACTTATACATATATTCCGTAATTTAATGTTTTGCTGCACACGCATGCTACTCTCGCAATGCCATATATATCGTCCATCAT]
[+] EMBL OSS2938A [GTGNCNANAGGGCAAGCAGCTATATATGTCATGCAAGCAAGGCCAAGGTGAGCAGACATCATCANTGGCGGGCNCGGGCAAGGGCAAGGNCGAGGTCGAGGGCATGGAGCAGAAGCTGGAGAAGCTGATGTCGGCNTTTCACGACCATCAGGAAGGCAACAAGGCGGTGAGGCATCANAAGGAGCTGGAGGAGCTCTTCACCTTCCTCAGGGAGCACGAGGCCGCCTTCTCGCAGCTTCCA ]
[+] EMBL AK059175 [ GGCGGGCGCGGGCAAGGGCAAGGGCGAGGTCGAGGGCATGGAGCAGAAGCTGGAGAAGCTGATGTCGGCGTTTCACGACCATCAGGAAGGCAACAAGGCGGTGAGGCATCAGAAGGAGCTGGAGGAGCTCTTCAGCTTCCTCAGGGAGCACGAGGCCGCCTTCTCGCAGCTTCCAGGGGACAAGAAGGACGACCTCGACGCCCTCCTCCGCAACATCGAGGGCGTCCTTGAGCTGTGCAAGAATCAGGAGGAGAAGAAGAAGAAGACGACGAACAAGATGGGCGACTGCATCCCCTTCAAGTCGTCGTCCAGGCCGCCTGCTGACCACACGTCGTCGACGTCGGTGGTGGCGCCGTTGCTGATGCAGGCCAGGGACATTCTCGGCGACTCATCATCATCTGCTCCTGCAGCTGCAGGGCCTAATAAGAAGGAGGTGCTGTACGAGTGGACGACGAGCTACGTCGACGAGAAGAGGCTATACGGGTGGGACGACGAGGCCACGGAGGTGGCGGACGCCCTCGCCGGCCCCGAGGAAGACGACGACGAGCTGTTCAGGGCGGCGGGCATCTTCGGCATCCACGGAAGCGGCAAGACGGCGCTGGCCCAGAAGGTGTTCGTCCACGACCGCATCAAGGACACCTTCCTGCTCCGCCTCTGGGTGTGCGTCGGCCCGACGCCGCCGGACGATGACAAGCAACAGCAGTACGAGGTGAAGTTTAGCCTCCTCTACCGCATGCTCGACAACCTCGGCCTCGACACCTATAAGGTGGAGGAAGTCGTCAACGGCTCGGAAGCCGTCAAGAAGCACAGCGGCGACAGCGACGCCGCCAAGGAGTCCAAGATCGGCGTGCTGCTCTTCATCCTGCACGTGGCGCTGGCCAAGACCTCCTACCTCATCGTGTTGGACGACATCCGGGCGTACGACCCCTGGTACACCAACCTGGCGCTGCCGCCGCCGCCCCACGGCGAGTGGAGCGACCGCCTCGCCTACGGCCTGCCCAAGCTGAACAAGAGCGCCGTGCTCGTCACCTGCCGCAAGGAGGAGCACGCCAGGGCCATGGTGCGCACCGGCCGCGTCTTCCACCCGCCGCTCCTCGCCGTCGCCGACGCCTGGAAGCTCTTCGAACGCGAGTACCTGCAGGAGGCCGAGAAGAAACAAGTCGGGTACAACGTCAAGGACGACGTGCTGTACAATGATCTCAAGGTGGTGCAGGAGGGGATGGTCGGCAAGTGCCTCGGCCTGCCGGTGGCCATCCTCGAGGCCGCCAAGGGCTTCGCCCAGTACTGCACCTACGTTGATGACGACGATGCCAAAACTACTCAACCCACTACTGCTAAAGGTGCCGACGCCGGCGACCCTGCTCATGCTGCCGCCTAGATCCACTCTCATCCATCCAAACACTATACTTATACATATATTCCGTAATTTAATGTTTTGCTGCACACGCATGCTACTCTCGCAATGCCATATATATCGTCCATCAT]
consensusID : consensus_4457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[CGTAATTTAGGNTTTTGNTGCACACGCATGCTACTCTCGCAATGCCAGTATATATCGTCCATCATTTGGTCTGCCTAATATAATGAATGTAAGGTACAGGTNGANTTTTCGTNGGTGTATTTAATTGTGTGTCTGTGTACTCCTACGTACTGTCTANNNATTTTTCACGGNGCANATCCNNNTNAACATTAGTGCAAAAAAAAAA]
[+] EMBL AU108342 [CGTAATTTAGGNTTTTGNTGCACACGCATGCTACTCTCGCAATGCCAGTATATATCGTCCATCATTTGGTCTGCCTAATATAATGAATGTAAGGTACAGGTNGANTTTTCGTNGGTGTATTTAATTGTGTGTCTGTGTACTCCTACGTACTGTCTANNNATTTTTCACGGNGCANATCCNNNTNAACATTAGTGCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4457#0 GTGNCNANAGGGCAAGCAGCTATATATGTCATGCAAGCAAGGCCAAGGTGAGCAGACATC 60
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 ATCANTGGCGGGCNCGGGCAAGGGCAAGGNCGAGGTCGAGGGCATGGAGCAGAAGCTGGA 120
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 GAAGCTGATGTCGGCNTTTCACGACCATCAGGAAGGCAACAAGGCGGTGAGGCATCANAA 180
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 GGAGCTGGAGGAGCTCTTCACCTTCCTCAGGGAGCACGAGGCCGCCTTCTCGCAGCTTCC 240
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 AGGGGACAAGAAGGACGACCTCGACGCCCTCCTCCGCAACATCGAGGGCGTCCTTGAGCT 300
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 GTGCAAGAATCAGGAGGAGAAGAAGAAGAAGACGACGAACAAGATGGGCGACTGCATCCC 360
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 CTTCAAGTCGTCGTCCAGGCCGCCTGCTGACCACACGTCGTCGACGTCGGTGGTGGCGCC 420
consensus_4457#1 --------------------------------------------CGTAATTTAGGNTTTT 16
*** * *
consensus_4457#0 GTTGCTGATGCAGGCCAGGGACATTCTCGGCGACTCATCATCATCTGCTCCTGCAGCTGC 480
consensus_4457#1 GNTGCACACGCATGCTACTCTCGCAAT--GCCAGTATATATCGTCCATCATTTGGTCTGC 74
* *** * *** ** * * * ** * * *** ** * ****
consensus_4457#0 AGGGCCTAATAAGAAGGAGGTGCTGTACGAGTGGACGACGAGCTACGTCGACGAGAAGAG 540
consensus_4457#1 CTAATATAATGAATGTAAGGTACAGGTNGANTTTTCGTNGGTGTATTTAATTGTGTGTCT 134
**** * **** * * ** * ** * ** * * *
consensus_4457#0 GC-TATACGGGTGGGACGACGAGGCCACGGAGGTGGCGGACGCCCTCGCCGGCCCCGAGG 599
consensus_4457#1 GTGTACTCCTACGTACTGTCTANNNATTTTTCACGGNGCANATCCNNNTNAACATTAGTG 194
* ** * * * * * ** * * ** * *
consensus_4457#0 AAGACGACGACGAGCTGTTCAGGGCGGCGGGCATCTTCGGCATCCACGGAAGCGGCAAGA 659
consensus_4457#1 CAAAAAAAAAA------------------------------------------------- 205
* * * *
consensus_4457#0 CGGCGCTGGCCCAGAAGGTGTTCGTCCACGACCGCATCAAGGACACCTTCCTGCTCCGCC 719
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 TCTGGGTGTGCGTCGGCCCGACGCCGCCGGACGATGACAAGCAACAGCAGTACGAGGTGA 779
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 AGTTTAGCCTCCTCTACCGCATGCTCGACAACCTCGGCCTCGACACCTATAAGGTGGAGG 839
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 AAGTCGTCAACGGCTCGGAAGCCGTCAAGAAGCACAGCGGCGACAGCGACGCCGCCAAGG 899
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 AGTCCAAGATCGGCGTGCTGCTCTTCATCCTGCACGTGGCGCTGGCCAAGACCTCCTACC 959
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 TCATCGTGTTGGACGACATCCGGGCGTACGACCCCTGGTACACCAACCTGGCGCTGCCGC 1019
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 CGCCGCCCCACGGCGAGTGGAGCGACCGCCTCGCCTACGGCCTGCCCAAGCTGAACAAGA 1079
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 GCGCCGTGCTCGTCACCTGCCGCAAGGAGGAGCACGCCAGGGCCATGGTGCGCACCGGCC 1139
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 GCGTCTTCCACCCGCCGCTCCTCGCCGTCGCCGACGCCTGGAAGCTCTTCGAACGCGAGT 1199
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 ACCTGCAGGAGGCCGAGAAGAAACAAGTCGGGTACAACGTCAAGGACGACGTGCTGTACA 1259
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 ATGATCTCAAGGTGGTGCAGGAGGGGATGGTCGGCAAGTGCCTCGGCCTGCCGGTGGCCA 1319
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 TCCTCGAGGCCGCCAAGGGCTTCGCCCAGTACTGCACCTACGTTGATGACGACGATGCCA 1379
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 AAACTACTCAACCCACTACTGCTAAAGGTGCCGACGCCGGCGACCCTGCTCATGCTGCCG 1439
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 CCTAGATCCACTCTCATCCATCCAAACACTATACTTATACATATATTCCGTAATTTAATG 1499
consensus_4457#1 ------------------------------------------------------------
consensus_4457#0 TTTTGCTGCACACGCATGCTACTCTCGCAATGCCATATATATCGTCCATCAT 1551
consensus_4457#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||