These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1347 fasta sequence [AAACCCTACCGCCGCCGCCGCTTCCTCTCCTCTTCTTCTTCCACCACCGGAGCAGAGGAAACCAAACCATGGCCCCCATCGTGCGCCCCTCCAAATCTGGCTCCAACTCCGATTCCGATTCCCACGCTCACCACCCTCCTCCTGAGCCGCCGCAAGAAAGCTCTGACGGCGAGGACTTGGAGCTCGAGTCCTCCGAGGAACTTGATTCGCATGGGGCGCCCACCAAGAAAGCCCCCTTCGTCGCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAGCAGAATGGGAAGGAGGTCTCCGATTCGCCATCGCTGCCCACCAATAGTGCCATCGTCCTCTCCCCGCTACCACCACCGCTGCAGGCGAACAAGAATCACCAAGACCAAGATTCTGAGTCTGATTCCGATTCTGATGACGACGAGCCACCGCTGCCCACCAACAATGCAATCGTCCTCGCCCCGCCGAACAACCAGGAGTCTGAGTCTGATTCTGATTCTGATGACGACCAAGAGTCAGCGCTGAAGGCGAACAAGATTGTGTCCTTGTCCGGCGATGACGACCAAGAGTCCGATTCCAGTGACGACGAGGCGCTGCCAGCGCTTCAGGCCAACAAGAATGCGTCTCCGTCCGATGATGATGAGGATGACGACCAAGAGTCCGATTCCGGTGACGACGATGTGCTGCTGGACCCCGCGCTTCAGGCGAACAAGAATGTGCTTGCCTTCAATGGGAAGAGGAAGGTGCCGCCGCAAGAGGTTGGTCAGTCTCTTCGGCAGCCCAAGAAGAAGAAGATGGAGGCACCAGCCCAAGGAAACACAGACATTGACACGCAATTCAAGGAGAAGATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCTGGATGAAGAGCACCCCGACTTGTTTAAGGAGGCTTTCTTGAAGCTTGCTGACAGCAAGGCCAGTGCCCTGGATGCTAAGATCAAGCAGCTGACTTTGGCTCAGGTCAGGGTGTCTTTGAAGGGGCGTGACCTGGAGAAGGAACTGATCAAGTTGCTGTCGGGCTTCCTCAAGTGATCATTATAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCTAATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGCATCGTCTCATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGACCACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACTACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTA] [+] EMBL AK064377 [AAACCCTACCGCCGCCGCCGCTTCCTCTCCTCTTCTTCTTCCACCACCGGAGCAGAGGAAACCAAACCATGGCCCCCATCGTGCGCCCCTCCAAATCTGGCTCCAACTCCGATTCCGATTCCCACGCTCACCACCCTCCTCCTGAGCCGCCGCAAGAAAGCTCTGACGGCGAGGACTTGGAGCTCGAGTCCTCCGAGGAACTTGATTCGCATGGGGCGCCCACCAAGAAAGCCCCCTTCGTCGCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAGCAGAATGGGAAGGAGGTCTCCGATTCGCCATCGCTGCCCACCAATAGTGCCATCGTCCTCTCCCCGCTACCACCACCGCTGCAGGCGAACAAGAATCACCAAGACCAAGATTCTGAGTCTGATTCCGATTCTGATGACGACGAGCCACCGCTGCCCACCAACAATGCAATCGTCCTCGCCCCGCCGAACAACCAGGAGTCTGAGTCTGATTCTGATTCTGATGACGACCAAGAGTCAGCGCTGAAGGCGAACAAGATTGTGTCCTTGTCCGGCGATGACGACCAAGAGTCCGATTCCAGTGACGACGAGGCGCTGCCAGCGCTTCAGGCCAACAAGAATGCGTCTCCGTCCGATGATGATGAGGATGACGACCAAGAGTCCGATTCCGGTGACGACGATGTGCTGCTGGACCCCGCGCTTCAGGCGAACAAGAATGTGCTTGCCTTCAATGGGAAGAGGAAGGTGCCGCCGCAAGAGGTTGGTCAGTCTCTTCGGCAGCCCAAGAAGAAGAAGATGGAGGCACCAGCCCAAGGAAACACAGACATTGACACGCAATTCAAGGAGAAGATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCTGGATGAAGAGCACCCCGACTTGTTTAAGGAGGCTTTCTTGAAGCTTGCTGACAGCAAGGCCAGTGCCCTGGATGCTAAGATCAAGCAGCTGACTTTGGCTCAGGTCAGGGTGTCTTTGAAGGGGCGTGACCTGGAGAAGGAACTGATCAAGTTGCTGTCGGGCTTCCTCAAGTGATCATTATAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCTAATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGCATCGTCTCATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGACCACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACTACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTA] [+] EMBL CF324544 [ AAGAATCACCAAGACCAAGATTCTGAGTCTGATTCCGATTCTGATGACGACGAGCCACCGCTGCCCACCAACAATGCAATCGTCCTCGCCCCGCCGAACAACCAGGAGTCTGAGTCTGATTCTGATTCTGATGACGACCAAGAGTCAGCGCTGAAGGCGAACAAGATTGTGTCCTCGTCCGGCGATGACGACCAAGAGTCCGATTCCAGTGACGACGAGACGCTGCCAGCGCTTCAGGCCAACAAGAATGCGTCTCCGTCCGATGATGATGAGGATGACGACCAAGAGTCCGATTCCGGTGACGACGATGTGCTGCTGGACCCCGCGCTTCAGGCGAACAAGAATGTGCTTGCCTTCAATGGGAAGAGGAAGGTGCCGCCGCAAGAGGTT ] consensusID : consensus_4458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [GCAAGCTGCTGAAATGATGGAAATGCAAGATCTTTTGGAAATATAGTGCGGAATAGTTACTGATTGATATATAAGAATGTCCCCAGAAACTAGATTCTGTAGTATAAACAATGCNAAACTTTCTAGGCAATTAAAACTACTGATTGTGCTTTCAACGTTTTGATGCCCTTCTTCCTTGTGTATGTAAAGGAGTTATTTGACATCAATATCAGTGGGTGCTTATTTGTTTAAAAGGTTTCAATGGCCTATCAGACTATCAGTGTAAATTGAGTCTATTTTTGCAAACACTGGTTTGGTCTTCTATGATCTTGGGCTATGTGCAGTTGTGTTTTTGATGACTAATCTAGCCAAGCAATTATGTAACTTGATTTACGTTTTCTTTTTTCATTTTTGCAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCTAATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGTATCGTCTCATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGACCACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACTACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTAAGCTTCCTTCAAAAAAAAAAAAA] [-] EMBL CA760598 [GCAAGCTGCTGAAATGATGGAAATGCAAGATCTTTTGGAAATATAGTGCGGAATAGTTACTGATTGATATATAAGAATGTCCCCAGAAACTAGATTCTGTAGTATAAACAATGCNAAACTTTCTAGGCAATTAAAACTACTGATTGTGCTTTCAACGTTTTGATGCCCTTCTTCCTTGTGTATGTAAAGGAGTTATTTGACATCAATATCAGTGGGTGCTTATTTGTTTAAAAGGTTTCAATGGCCTATCAGACTATCAGTGTAAATTGAGTCTATTTTTGCAAACACTGGTTTGGTCTTCTATGATCTTGGGCTATGTGCAGTTGTGTTTTTGATGACTAATCTAGCCAAGCAATTATGTAACTTGATTTACGTTTTCTTTTTTCATTTTTGCAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCTAATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGTATCGTCTCATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGACCACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACTACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTAAGCTTCCTTCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4458#0 AAACCCTACCGCCGCCGCCGCTTCCTCTCCTCTTCTTCTTCCACCACCGGAGCAGAGGAA 60 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 ACCAAACCATGGCCCCCATCGTGCGCCCCTCCAAATCTGGCTCCAACTCCGATTCCGATT 120 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 CCCACGCTCACCACCCTCCTCCTGAGCCGCCGCAAGAAAGCTCTGACGGCGAGGACTTGG 180 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 AGCTCGAGTCCTCCGAGGAACTTGATTCGCATGGGGCGCCCACCAAGAAAGCCCCCTTCG 240 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 TCGCCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCAGCAGAATGGGAAGGAGGTCT 300 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 CCGATTCGCCATCGCTGCCCACCAATAGTGCCATCGTCCTCTCCCCGCTACCACCACCGC 360 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 TGCAGGCGAACAAGAATCACCAAGACCAAGATTCTGAGTCTGATTCCGATTCTGATGACG 420 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 ACGAGCCACCGCTGCCCACCAACAATGCAATCGTCCTCGCCCCGCCGAACAACCAGGAGT 480 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 CTGAGTCTGATTCTGATTCTGATGACGACCAAGAGTCAGCGCTGAAGGCGAACAAGATTG 540 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 TGTCCTTGTCCGGCGATGACGACCAAGAGTCCGATTCCAGTGACGACGAGGCGCTGCCAG 600 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 CGCTTCAGGCCAACAAGAATGCGTCTCCGTCCGATGATGATGAGGATGACGACCAAGAGT 660 consensus_4458#1 ------------------------------------------------------------ consensus_4458#0 CCGATTCCGGTGACGACGATGTGCTGCTGGACCCCGCGCTTCAGGCGAACAAGAATGTGC 720 consensus_4458#1 -------GCAAGCTGCTGAAATGATGGAAATGCAAGATCTTTTGGAAATATAGTGCGGAA 53 * * ** ** ** * * *** ** * ** * consensus_4458#0 TTGCCTTCAATGGGAAGAGGAAGGTGCCGCCGCAAGAGGTTGGTCAGTCTCTTCGGCAGC 780 consensus_4458#1 TAGTTACTGATTGATATATAAGAATGTCCCC---AGAAACTAGA-------TTCTGTAGT 103 * * ** * * * * ** * ** *** * * *** * ** consensus_4458#0 CCAAGAAGAAGAAGATGGAGGCACCAGCCCAAGGAAACACAGACATTGACACGCAATTCA 840 consensus_4458#1 ATAAACAATGCNAAA---------CTTTCTAGGCAATTAAAACTACTGATTGTGCTTTCA 154 ** * * * * * * * ** * * * *** **** consensus_4458#0 AGGAGAAGATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCTGGATGA-AGAG 899 consensus_4458#1 ACGTTTTGATGCCCTTCTTCCTTGTGTATGTAAAGGAGTTATTTGACATCAATATCAGTG 214 * * *** * * ** * ** * ** **** * * * * * ** ** * consensus_4458#0 CACCCCGACTTGTTTAAGGAGGCTTTCTTGA---AGCTTGCTGACAGCAAGGCCAGTGCC 956 consensus_4458#1 GGTGCTTATTTGTTTAAA-AGGTTTCAATGGCCTATCAGACTATCAGTGTAAATTGAGTC 273 * * ******** *** ** ** * * ** *** * * * consensus_4458#0 C-TGGATGCTAAGATCAAGCAGCT-------GACTTTGGCTCAGGTCAGGGTGTCTTTGA 1008 consensus_4458#1 TATTTTTGCAAACACTGGTTTGGTCTTCTATGATCTTGGGCTATGTGCAGTTGTGTTTTT 333 * *** ** * * * ** **** * ** * *** *** consensus_4458#0 AGGGGCGTGACCTGGAGAAGGAACTGATCAAGTTGCTGTCGGGCTTCCTCAAGTGATCAT 1068 consensus_4458#1 GATGAC-TAATCTAGCCAAGCAATTATGTAACTTGAT-TTACGTTTTCTTTTTTCATTTT 391 * * * * ** * *** ** * ** *** * * * ** ** * ** * consensus_4458#0 TATAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCT 1128 consensus_4458#1 TGCAGACATGGAGAAAACTTCAAGGAAGTGGGGGCTGACTGGACTGGGGTACAGTATGCT 451 * ********************************************************* consensus_4458#0 AATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGCATCGTCTC 1188 consensus_4458#1 AATGCACCTGGTCATTTTGCTTTTGATTCTGGCTCATATCAACCTCGTTGGTATCGTCTC 511 *************************************************** ******** consensus_4458#0 ATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGAC 1248 consensus_4458#1 ATTTTGGTCCAAGATGGACATGTTTAATCTACTGATGTAAATACTCTGGTGATTTGGGAC 571 ************************************************************ consensus_4458#0 CACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACT 1308 consensus_4458#1 CACCAAGACTAGCTACTCTACCCCATATTTAGATAGTACTAGCTTATATTCCACTGAACT 631 ************************************************************ consensus_4458#0 ACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTA--------------------- 1347 consensus_4458#1 ACCTGCACAACAGTTATTAATCATGGTAAACTTCAGTTAAGCTTCCTTCAAAAAAAAAAA 691 *************************************** consensus_4458#0 -- consensus_4458#1 AA 693 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||