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Oryza sativa
cluster # 447 cluster # 447       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_447#0 length = 1052 sequences # 1  
consensus_447#1 length = 454 sequences # 1  

consensusID : consensus_447#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1052
fasta sequence
                              [GCTCCAGGCAGGACGGCGGCACTGCCCGACGGGTGGGGAGGAAGGCGGCGTCGGCAGCGGCAGCTTCCTCTCCGTGCTCGCCGACGAGGAGGAGCAAGGTGGTGGCGGCGCCGGGGGGGGGGGGGAGCAAGGCGGTGGCGTCAGCCTCCTCTCCGTGCTCGCTGACAAGGAGGAGCGGTGGGCGACCCAGCGTCGCGGCGATGCCGCCGCCGCCGACGGCGGTCCTCCTGGACAACGTCCTCGCCACCTCGCTGACGGAGATCTGGATCAAGACCGGGATGGCGACGAGCACCCTCACCAAGCACCTGCGAGGCTTACCGTTCTTGCTCGCCCGCCGCCGTCCTCGCCGTGTCGTTTCCCCAACCGCCGCGCCGCTTCGCTGTCTTCACCGTGCCGCTCCTTTCCTTCCATTTCATCTCCACCAGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGTGTCATGGCGTTGGGTGCGTCGTACGCCCGGGACACGCCGGAGCACGCCGCGCCGCCGCCAGTGGTGGAGGCCGACGCGGAGCAGCGGATGACGACGTGGACTCAGCTGTCGTGCCCCACCTCGGCGTCGGGCTGCAGCGCCTCCCTCCAGCGGAACGTGGCGATGCTGGCGTCGACGTCCGGCGGGGACTGCTCGGAGATGATGGTCGTCACCTGCCCGCTCCGCCGACCCACCTGCTCCTGCGTGGTCACCACCGCCGCTGCATCGCCGGTCGCCGGCCACCGCCGCCGATCCTCCTCTCCCGCCTCGCCCCGTCGACTTCCTCCCCAACACGCTGGCCAGCCTGCCCAGGAGAAAATGGAGAGAAGAGGAAGGGACAGATGACGTGGCATCCTGACATGTGGGGCCCATGTGGGTCCCACGCTGACTCGGCCACCACGCCAAACAAAACCGGGGTCAAAACCACGAGGGACCTAAAGCGAACGGTTTTGATATTTAAGGGACGCCCGGTATCTATTGGGTTGACGATTTTGTATCTCGATGACAATTTGAGGGACCCTGGGTGTACTTTTTTCTTTATTCTCCGA]

[+] EMBL AK109945             [GCTCCAGGCAGGACGGCGGCACTGCCCGACGGGTGGGGAGGAAGGCGGCGTCGGCAGCGGCAGCTTCCTCTCCGTGCTCGCCGACGAGGAGGAGCAAGGTGGTGGCGGCGCCGGGGGGGGGGGGGAGCAAGGCGGTGGCGTCAGCCTCCTCTCCGTGCTCGCTGACAAGGAGGAGCGGTGGGCGACCCAGCGTCGCGGCGATGCCGCCGCCGCCGACGGCGGTCCTCCTGGACAACGTCCTCGCCACCTCGCTGACGGAGATCTGGATCAAGACCGGGATGGCGACGAGCACCCTCACCAAGCACCTGCGAGGCTTACCGTTCTTGCTCGCCCGCCGCCGTCCTCGCCGTGTCGTTTCCCCAACCGCCGCGCCGCTTCGCTGTCTTCACCGTGCCGCTCCTTTCCTTCCATTTCATCTCCACCAGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGTGTCATGGCGTTGGGTGCGTCGTACGCCCGGGACACGCCGGAGCACGCCGCGCCGCCGCCAGTGGTGGAGGCCGACGCGGAGCAGCGGATGACGACGTGGACTCAGCTGTCGTGCCCCACCTCGGCGTCGGGCTGCAGCGCCTCCCTCCAGCGGAACGTGGCGATGCTGGCGTCGACGTCCGGCGGGGACTGCTCGGAGATGATGGTCGTCACCTGCCCGCTCCGCCGACCCACCTGCTCCTGCGTGGTCACCACCGCCGCTGCATCGCCGGTCGCCGGCCACCGCCGCCGATCCTCCTCTCCCGCCTCGCCCCGTCGACTTCCTCCCCAACACGCTGGCCAGCCTGCCCAGGAGAAAATGGAGAGAAGAGGAAGGGACAGATGACGTGGCATCCTGACATGTGGGGCCCATGTGGGTCCCACGCTGACTCGGCCACCACGCCAAACAAAACCGGGGTCAAAACCACGAGGGACCTAAAGCGAACGGTTTTGATATTTAAGGGACGCCCGGTATCTATTGGGTTGACGATTTTGTATCTCGATGACAATTTGAGGGACCCTGGGTGTACTTTTTTCTTTATTCTCCGA]


>consensus_447#0 GCTCCAGGCAGGACGGCGGCACTGCCCGACGGGTGGGGAGGAAGGCGGCGTCGGCAGCGG CAGCTTCCTCTCCGTGCTCGCCGACGAGGAGGAGCAAGGTGGTGGCGGCGCCGGGGGGGG GGGGGAGCAAGGCGGTGGCGTCAGCCTCCTCTCCGTGCTCGCTGACAAGGAGGAGCGGTG GGCGACCCAGCGTCGCGGCGATGCCGCCGCCGCCGACGGCGGTCCTCCTGGACAACGTCC TCGCCACCTCGCTGACGGAGATCTGGATCAAGACCGGGATGGCGACGAGCACCCTCACCA AGCACCTGCGAGGCTTACCGTTCTTGCTCGCCCGCCGCCGTCCTCGCCGTGTCGTTTCCC CAACCGCCGCGCCGCTTCGCTGTCTTCACCGTGCCGCTCCTTTCCTTCCATTTCATCTCC ACCAGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGTGTCATGGCGTTGGGT GCGTCGTACGCCCGGGACACGCCGGAGCACGCCGCGCCGCCGCCAGTGGTGGAGGCCGAC GCGGAGCAGCGGATGACGACGTGGACTCAGCTGTCGTGCCCCACCTCGGCGTCGGGCTGC AGCGCCTCCCTCCAGCGGAACGTGGCGATGCTGGCGTCGACGTCCGGCGGGGACTGCTCG GAGATGATGGTCGTCACCTGCCCGCTCCGCCGACCCACCTGCTCCTGCGTGGTCACCACC GCCGCTGCATCGCCGGTCGCCGGCCACCGCCGCCGATCCTCCTCTCCCGCCTCGCCCCGT CGACTTCCTCCCCAACACGCTGGCCAGCCTGCCCAGGAGAAAATGGAGAGAAGAGGAAGG GACAGATGACGTGGCATCCTGACATGTGGGGCCCATGTGGGTCCCACGCTGACTCGGCCA CCACGCCAAACAAAACCGGGGTCAAAACCACGAGGGACCTAAAGCGAACGGTTTTGATAT TTAAGGGACGCCCGGTATCTATTGGGTTGACGATTTTGTATCTCGATGACAATTTGAGGG ACCCTGGGTGTACTTTTTTCTTTATTCTCCGA



consensusID : consensus_447#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence
                              [GGAGATCTGGATCAAGACCGGGATGCCGACGAGCACCCTCACCAAGCACCTGCGAGGCCTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGTCGCGTCGTTTTCCCAACCGCCGCGCCGCTTCGCCATCTTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCACTTCATCTCCACCGGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGCGTCATGGCGTTGGACGCGCCGTACGCTCGGGACACGCCGGAGCGCGCCGCGCCGCCGCCCGTGGTGGAGGTTGACGCGGACAGCGGATGACGGCGTGGACTCGACCGTCGCGCCCCGCCTTCGGCGTCCGCCTGCAGCGCCTTCCCTNCCGTTGAGCGAGACGACGTCGGAGTCGACCCGGAACGTGGCGATGCTTGCGTCGANGTCCGGCGGGAACNGCTCGGAGATGATGGTCG]

[+] EMBL AU071182             [GGAGATCTGGATCAAGACCGGGATGCCGACGAGCACCCTCACCAAGCACCTGCGAGGCCTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGTCGCGTCGTTTTCCCAACCGCCGCGCCGCTTCGCCATCTTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCACTTCATCTCCACCGGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGCGTCATGGCGTTGGACGCGCCGTACGCTCGGGACACGCCGGAGCGCGCCGCGCCGCCGCCCGTGGTGGAGGTTGACGCGGACAGCGGATGACGGCGTGGACTCGACCGTCGCGCCCCGCCTTCGGCGTCCGCCTGCAGCGCCTTCCCTNCCGTTGAGCGAGACGACGTCGGAGTCGACCCGGAACGTGGCGATGCTTGCGTCGANGTCCGGCGGGAACNGCTCGGAGATGATGGTCG]


>consensus_447#1 GGAGATCTGGATCAAGACCGGGATGCCGACGAGCACCCTCACCAAGCACCTGCGAGGCCT GCCGCTCCTGCTCGCCCGCCGCCATCCTCGTCGCGTCGTTTTCCCAACCGCCGCGCCGCT TCGCCATCTTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCACTTCATCTCCACCGGCG AGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGCGTCATGGCGTTGGACGCGCCGT ACGCTCGGGACACGCCGGAGCGCGCCGCGCCGCCGCCCGTGGTGGAGGTTGACGCGGACA GCGGATGACGGCGTGGACTCGACCGTCGCGCCCCGCCTTCGGCGTCCGCCTGCAGCGCCT TCCCTNCCGTTGAGCGAGACGACGTCGGAGTCGACCCGGAACGTGGCGATGCTTGCGTCG ANGTCCGGCGGGAACNGCTCGGAGATGATGGTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_447#0      GCTCCAGGCAGGACGGCGGCACTGCCCGACGGGTGGGGAGGAAGGCGGCGTCGGCAGCGG 60
consensus_447#1      ------------------------------------------------------------
                                                                                 

consensus_447#0      CAGCTTCCTCTCCGTGCTCGCCGACGAGGAGGAGCAAGGTGGTGGCGGCGCCGGGGGGGG 120
consensus_447#1      ------------------------------------------------------------
                                                                                 

consensus_447#0      GGGGGAGCAAGGCGGTGGCGTCAGCCTCCTCTCCGTGCTCGCTGACAAGGAGGAGCGGTG 180
consensus_447#1      ------------------------------------------------------------
                                                                                 

consensus_447#0      GGCGACCCAGCGTCGCGGCGATGCCGCCGCCGCCGACGGCGGTCCTCCTGGACAACGTCC 240
consensus_447#1      ------------------------------------------------------------
                                                                                 

consensus_447#0      TCGCCACCTCGCTGACGGAGATCTGGATCAAGACCGGGATGGCGACGAGCACCCTCACCA 300
consensus_447#1      ----------------GGAGATCTGGATCAAGACCGGGATGCCGACGAGCACCCTCACCA 44
                                     ************************* ******************

consensus_447#0      AGCACCTGCGAGGCTTACCGTTCTTGCTCGCCCGCCGCCGTCCTCGCCGTGTCGTTTCCC 360
consensus_447#1      AGCACCTGCGAGGCCTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGTCGCGTCGTTTTCC 104
                     ************** * *** ** *************** ****** ** ******* **

consensus_447#0      CAACCGCCGCGCCGCTTCGCT---------GTCTTCACCGTGCCGCTCCTTTCCTTCCAT 411
consensus_447#1      CAACCGCCGCGCCGCTTCGCCATCTTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCAC 164
                     ********************          ****** ************* ******** 

consensus_447#0      TTCATCTCCACCAGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGTGTCATG 471
consensus_447#1      TTCATCTCCACCGGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGCGTCATG 224
                     ************ **************************************** ******

consensus_447#0      GCGTTGGGTGCGTCGTACGCCCGGGACACGCCGGAGCACGCCGCGCCGCCGCCAGTGGTG 531
consensus_447#1      GCGTTGGACGCGCCGTACGCTCGGGACACGCCGGAGCGCGCCGCGCCGCCGCCCGTGGTG 284
                     *******  *** ******* **************** *************** ******

consensus_447#0      GAGGCCGACGCGGAGCAGCGGATGACGACGTGGACTCAGCTGTCGTGCCCCACCT-CGGC 590
consensus_447#1      GAGGTTGACGCGGA-CAGCGGATGACGGCGTGGACTCGACCGTCGCGCCCCGCCTTCGGC 343
                     ****  ******** ************ *********  * **** ***** *** ****

consensus_447#0      GTCGGGCTGCAGCGCCT-CCCTCCAGCGGAACGTGGCGATGCTGGCGTCGACGTCCGGCG 649
consensus_447#1      GTCCGCCTGCAGCGCCTTCCCTNCCGTTGAGCGAGACGACGTCGGAGTCGACCCGGAACG 403
                     *** * *********** **** * *  ** ** * *** *  ** ******      **

consensus_447#0      GGG-ACTGCTCGGAGATGATGGTCGTCACCTGCCCGCTCCGCCGACCCACCTGCTCCTGC 708
consensus_447#1      TGGCGATGCTTGC-GTCGANGTCCGGCGGGAACN-GCTCGGAGATGATGGTCG------- 454
                      **   **** *  *  ** *  ** *     *  **** *           *       

consensus_447#0      GTGGTCACCACCGCCGCTGCATCGCCGGTCGCCGGCCACCGCCGCCGATCCTCCTCTCCC 768
consensus_447#1      ------------------------------------------------------------
                                                                                 

consensus_447#0      GCCTCGCCCCGTCGACTTCCTCCCCAACACGCTGGCCAGCCTGCCCAGGAGAAAATGGAG 828
consensus_447#1      ------------------------------------------------------------
                                                                                 

consensus_447#0      AGAAGAGGAAGGGACAGATGACGTGGCATCCTGACATGTGGGGCCCATGTGGGTCCCACG 888
consensus_447#1      ------------------------------------------------------------
                                                                                 

consensus_447#0      CTGACTCGGCCACCACGCCAAACAAAACCGGGGTCAAAACCACGAGGGACCTAAAGCGAA 948
consensus_447#1      ------------------------------------------------------------
                                                                                 

consensus_447#0      CGGTTTTGATATTTAAGGGACGCCCGGTATCTATTGGGTTGACGATTTTGTATCTCGATG 1008
consensus_447#1      ------------------------------------------------------------
                                                                                 

consensus_447#0      ACAATTTGAGGGACCCTGGGTGTACTTTTTTCTTTATTCTCCGA 1052
consensus_447#1      --------------------------------------------
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)