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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1052 fasta sequence
[GCTCCAGGCAGGACGGCGGCACTGCCCGACGGGTGGGGAGGAAGGCGGCGTCGGCAGCGGCAGCTTCCTCTCCGTGCTCGCCGACGAGGAGGAGCAAGGTGGTGGCGGCGCCGGGGGGGGGGGGGAGCAAGGCGGTGGCGTCAGCCTCCTCTCCGTGCTCGCTGACAAGGAGGAGCGGTGGGCGACCCAGCGTCGCGGCGATGCCGCCGCCGCCGACGGCGGTCCTCCTGGACAACGTCCTCGCCACCTCGCTGACGGAGATCTGGATCAAGACCGGGATGGCGACGAGCACCCTCACCAAGCACCTGCGAGGCTTACCGTTCTTGCTCGCCCGCCGCCGTCCTCGCCGTGTCGTTTCCCCAACCGCCGCGCCGCTTCGCTGTCTTCACCGTGCCGCTCCTTTCCTTCCATTTCATCTCCACCAGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGTGTCATGGCGTTGGGTGCGTCGTACGCCCGGGACACGCCGGAGCACGCCGCGCCGCCGCCAGTGGTGGAGGCCGACGCGGAGCAGCGGATGACGACGTGGACTCAGCTGTCGTGCCCCACCTCGGCGTCGGGCTGCAGCGCCTCCCTCCAGCGGAACGTGGCGATGCTGGCGTCGACGTCCGGCGGGGACTGCTCGGAGATGATGGTCGTCACCTGCCCGCTCCGCCGACCCACCTGCTCCTGCGTGGTCACCACCGCCGCTGCATCGCCGGTCGCCGGCCACCGCCGCCGATCCTCCTCTCCCGCCTCGCCCCGTCGACTTCCTCCCCAACACGCTGGCCAGCCTGCCCAGGAGAAAATGGAGAGAAGAGGAAGGGACAGATGACGTGGCATCCTGACATGTGGGGCCCATGTGGGTCCCACGCTGACTCGGCCACCACGCCAAACAAAACCGGGGTCAAAACCACGAGGGACCTAAAGCGAACGGTTTTGATATTTAAGGGACGCCCGGTATCTATTGGGTTGACGATTTTGTATCTCGATGACAATTTGAGGGACCCTGGGTGTACTTTTTTCTTTATTCTCCGA]
[+] EMBL AK109945 [GCTCCAGGCAGGACGGCGGCACTGCCCGACGGGTGGGGAGGAAGGCGGCGTCGGCAGCGGCAGCTTCCTCTCCGTGCTCGCCGACGAGGAGGAGCAAGGTGGTGGCGGCGCCGGGGGGGGGGGGGAGCAAGGCGGTGGCGTCAGCCTCCTCTCCGTGCTCGCTGACAAGGAGGAGCGGTGGGCGACCCAGCGTCGCGGCGATGCCGCCGCCGCCGACGGCGGTCCTCCTGGACAACGTCCTCGCCACCTCGCTGACGGAGATCTGGATCAAGACCGGGATGGCGACGAGCACCCTCACCAAGCACCTGCGAGGCTTACCGTTCTTGCTCGCCCGCCGCCGTCCTCGCCGTGTCGTTTCCCCAACCGCCGCGCCGCTTCGCTGTCTTCACCGTGCCGCTCCTTTCCTTCCATTTCATCTCCACCAGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGTGTCATGGCGTTGGGTGCGTCGTACGCCCGGGACACGCCGGAGCACGCCGCGCCGCCGCCAGTGGTGGAGGCCGACGCGGAGCAGCGGATGACGACGTGGACTCAGCTGTCGTGCCCCACCTCGGCGTCGGGCTGCAGCGCCTCCCTCCAGCGGAACGTGGCGATGCTGGCGTCGACGTCCGGCGGGGACTGCTCGGAGATGATGGTCGTCACCTGCCCGCTCCGCCGACCCACCTGCTCCTGCGTGGTCACCACCGCCGCTGCATCGCCGGTCGCCGGCCACCGCCGCCGATCCTCCTCTCCCGCCTCGCCCCGTCGACTTCCTCCCCAACACGCTGGCCAGCCTGCCCAGGAGAAAATGGAGAGAAGAGGAAGGGACAGATGACGTGGCATCCTGACATGTGGGGCCCATGTGGGTCCCACGCTGACTCGGCCACCACGCCAAACAAAACCGGGGTCAAAACCACGAGGGACCTAAAGCGAACGGTTTTGATATTTAAGGGACGCCCGGTATCTATTGGGTTGACGATTTTGTATCTCGATGACAATTTGAGGGACCCTGGGTGTACTTTTTTCTTTATTCTCCGA]
consensusID : consensus_447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence
[GGAGATCTGGATCAAGACCGGGATGCCGACGAGCACCCTCACCAAGCACCTGCGAGGCCTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGTCGCGTCGTTTTCCCAACCGCCGCGCCGCTTCGCCATCTTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCACTTCATCTCCACCGGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGCGTCATGGCGTTGGACGCGCCGTACGCTCGGGACACGCCGGAGCGCGCCGCGCCGCCGCCCGTGGTGGAGGTTGACGCGGACAGCGGATGACGGCGTGGACTCGACCGTCGCGCCCCGCCTTCGGCGTCCGCCTGCAGCGCCTTCCCTNCCGTTGAGCGAGACGACGTCGGAGTCGACCCGGAACGTGGCGATGCTTGCGTCGANGTCCGGCGGGAACNGCTCGGAGATGATGGTCG]
[+] EMBL AU071182 [GGAGATCTGGATCAAGACCGGGATGCCGACGAGCACCCTCACCAAGCACCTGCGAGGCCTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGTCGCGTCGTTTTCCCAACCGCCGCGCCGCTTCGCCATCTTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCACTTCATCTCCACCGGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGCGTCATGGCGTTGGACGCGCCGTACGCTCGGGACACGCCGGAGCGCGCCGCGCCGCCGCCCGTGGTGGAGGTTGACGCGGACAGCGGATGACGGCGTGGACTCGACCGTCGCGCCCCGCCTTCGGCGTCCGCCTGCAGCGCCTTCCCTNCCGTTGAGCGAGACGACGTCGGAGTCGACCCGGAACGTGGCGATGCTTGCGTCGANGTCCGGCGGGAACNGCTCGGAGATGATGGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_447#0 GCTCCAGGCAGGACGGCGGCACTGCCCGACGGGTGGGGAGGAAGGCGGCGTCGGCAGCGG 60
consensus_447#1 ------------------------------------------------------------
consensus_447#0 CAGCTTCCTCTCCGTGCTCGCCGACGAGGAGGAGCAAGGTGGTGGCGGCGCCGGGGGGGG 120
consensus_447#1 ------------------------------------------------------------
consensus_447#0 GGGGGAGCAAGGCGGTGGCGTCAGCCTCCTCTCCGTGCTCGCTGACAAGGAGGAGCGGTG 180
consensus_447#1 ------------------------------------------------------------
consensus_447#0 GGCGACCCAGCGTCGCGGCGATGCCGCCGCCGCCGACGGCGGTCCTCCTGGACAACGTCC 240
consensus_447#1 ------------------------------------------------------------
consensus_447#0 TCGCCACCTCGCTGACGGAGATCTGGATCAAGACCGGGATGGCGACGAGCACCCTCACCA 300
consensus_447#1 ----------------GGAGATCTGGATCAAGACCGGGATGCCGACGAGCACCCTCACCA 44
************************* ******************
consensus_447#0 AGCACCTGCGAGGCTTACCGTTCTTGCTCGCCCGCCGCCGTCCTCGCCGTGTCGTTTCCC 360
consensus_447#1 AGCACCTGCGAGGCCTGCCGCTCCTGCTCGCCCGCCGCCATCCTCGTCGCGTCGTTTTCC 104
************** * *** ** *************** ****** ** ******* **
consensus_447#0 CAACCGCCGCGCCGCTTCGCT---------GTCTTCACCGTGCCGCTCCTTTCCTTCCAT 411
consensus_447#1 CAACCGCCGCGCCGCTTCGCCATCTTCGCCGTCTTCGCCGTGCCGCTCCTCTCCTTCCAC 164
******************** ****** ************* ********
consensus_447#0 TTCATCTCCACCAGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGTGTCATG 471
consensus_447#1 TTCATCTCCACCGGCGAGTAGATCTCCACGCCGGTGAGGTTGGAGGCGCGCGGCGTCATG 224
************ **************************************** ******
consensus_447#0 GCGTTGGGTGCGTCGTACGCCCGGGACACGCCGGAGCACGCCGCGCCGCCGCCAGTGGTG 531
consensus_447#1 GCGTTGGACGCGCCGTACGCTCGGGACACGCCGGAGCGCGCCGCGCCGCCGCCCGTGGTG 284
******* *** ******* **************** *************** ******
consensus_447#0 GAGGCCGACGCGGAGCAGCGGATGACGACGTGGACTCAGCTGTCGTGCCCCACCT-CGGC 590
consensus_447#1 GAGGTTGACGCGGA-CAGCGGATGACGGCGTGGACTCGACCGTCGCGCCCCGCCTTCGGC 343
**** ******** ************ ********* * **** ***** *** ****
consensus_447#0 GTCGGGCTGCAGCGCCT-CCCTCCAGCGGAACGTGGCGATGCTGGCGTCGACGTCCGGCG 649
consensus_447#1 GTCCGCCTGCAGCGCCTTCCCTNCCGTTGAGCGAGACGACGTCGGAGTCGACCCGGAACG 403
*** * *********** **** * * ** ** * *** * ** ****** **
consensus_447#0 GGG-ACTGCTCGGAGATGATGGTCGTCACCTGCCCGCTCCGCCGACCCACCTGCTCCTGC 708
consensus_447#1 TGGCGATGCTTGC-GTCGANGTCCGGCGGGAACN-GCTCGGAGATGATGGTCG------- 454
** **** * * ** * ** * * **** * *
consensus_447#0 GTGGTCACCACCGCCGCTGCATCGCCGGTCGCCGGCCACCGCCGCCGATCCTCCTCTCCC 768
consensus_447#1 ------------------------------------------------------------
consensus_447#0 GCCTCGCCCCGTCGACTTCCTCCCCAACACGCTGGCCAGCCTGCCCAGGAGAAAATGGAG 828
consensus_447#1 ------------------------------------------------------------
consensus_447#0 AGAAGAGGAAGGGACAGATGACGTGGCATCCTGACATGTGGGGCCCATGTGGGTCCCACG 888
consensus_447#1 ------------------------------------------------------------
consensus_447#0 CTGACTCGGCCACCACGCCAAACAAAACCGGGGTCAAAACCACGAGGGACCTAAAGCGAA 948
consensus_447#1 ------------------------------------------------------------
consensus_447#0 CGGTTTTGATATTTAAGGGACGCCCGGTATCTATTGGGTTGACGATTTTGTATCTCGATG 1008
consensus_447#1 ------------------------------------------------------------
consensus_447#0 ACAATTTGAGGGACCCTGGGTGTACTTTTTTCTTTATTCTCCGA 1052
consensus_447#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||