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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1096 fasta sequence
[TCGTGCCGAATTCGGCACGAGCACAATGGACAGTACAGAATTTGTAAGTTGTTGATTTGCGCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGCGCCAGCGGGCAACAAGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATGCTGAACCACCGTGGGGACCAAGGTTGCCAAGGCGCCTTCTACACCTACGACGCGTTCATCAAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGCGAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCTCCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAAATCACGCCGTCGGAACCGCCCTACTACGGGCGAAGACCATACACCTTACTCATAAGTACAACTACCAGCTACCGGGGACCCTTGGGTCTGGAACTGGTGAACAACCCCGACCTGGTGTCAAGGACCCCGTGGTGGGTGTTCAGGACGCCCATTTGTTTTTGGATGACGGCGCAGTCACCCAAGCCGTTGTGCCAGGATGTAATCACCAACCAGTGGACCCCTTCCGGCGATGACCGTCTCCGGGAGGTCCCCGGGTACGGCATGCCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGTTATTCCACCGACAACGCCAAGGACCGGGTCGGTTACTACAAGAGGTACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACTGGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATGCCCCTAGTTAAACTGAAAAAAAA]
[+] EMBL OSAF1501 [TCGTGCCGAATTCGGCACGAGCACAATGGACAGTACAGAATTTGTAAGTTGTTGATTTGCGCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGCGCCAGCGGGCAACAAGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATGCTGAACCACCGTGGGGACCAAGGTTGCCAAGGCGCCTTCTACACCTACGACGCGTTCATCAAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGCGAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCTCCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAAATCACGCCGTCGGAACCGCCCTACTACGGGCGAAGACCATACACCTTACTCATAAGTACAACTACCAGCTACCGGGGACCCTTGGGTCTGGAACTGGTGAACAACCCCGACCTGGTGTCAAGGACCCCGTGGTGGGTGTTCAGGACGCCCATTTGTTTTTGGATGACGGCGCAGTCACCCAAGCCGTTGTGCCAGGATGTAATCACCAACCAGTGGACCCCTTCCGGCGATGACCGTCTCCGGGAGGTCCCCGGGTACGGCATGCCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGTTATTCCACCGACAACGCCAAGGACCGGGTCGGTTACTACAAGAGGTACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACTGGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATGCCCCTAGTTAAACTGAAAAAAAA]
consensusID : consensus_4495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1081 fasta sequence
[ACACGATCGAGAAACACAATTGACAGTACAGAATTTGTAAGTTGTTGATTTGCGCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGCGCCAGCGGGCAGCAGGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATGCTGAGCCACCGTGGGGACCAAGGTTGCCAGGGCGCCTTCTACACCTACGACGCGTTCATCAAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGCGAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCTCCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAGATCACGCCGTCGGACCCGCCCTACTACGGCCGAGGACCCATACAGCTTACTCATAAGTACAACTACCAGCTAGCCGGGGACGCGTTGGGTCTGGACCTGGTGAACAACCCCGACCTGGTGTCAAGCGACCCCGTGGTGGCGTTCAGGACGGCCATCTGGTTCTGGATGACGGCGCAGTCACCCAAGCCGTCGTGCCACGACGTAATCACCAACCAGTGGACGCCGTCCGGCGATGACCGTAGCTCCGGGAGGCTCCCCGGCTACGGCATGGCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGCTACTCCACCGACAACGCCAAGGACCGGGTCGGCTACTACAAGAGGTACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACTGGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATGCCCCTAGTT]
[+] EMBL AK059871 [ACACGATCGAGAAACACAATTGACAGTACAGAATTTGTAAGTTGTTGATTTGCGCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGCGCCAGCGGGCAGCAGGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATGCTGAGCCACCGTGGGGACCAAGGTTGCCAGGGCGCCTTCTACACCTACGACGCGTTCATCAAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGCGAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCTCCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAGATCACGCCGTCGGACCCGCCCTACTACGGCCGAGGACCCATACAGCTTACTCATAAGTACAACTACCAGCTAGCCGGGGACGCGTTGGGTCTGGACCTGGTGAACAACCCCGACCTGGTGTCAAGCGACCCCGTGGTGGCGTTCAGGACGGCCATCTGGTTCTGGATGACGGCGCAGTCACCCAAGCCGTCGTGCCACGACGTAATCACCAACCAGTGGACGCCGTCCGGCGATGACCGTAGCTCCGGGAGGCTCCCCGGCTACGGCATGGCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGCTACTCCACCGACAACGCCAAGGACCGGGTCGGCTACTACAAGAGGTACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACTGGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAA ]
[+] EMBL AK099355 [ CGATCGAGAAACACAATTGACAGTACAGAATTTGTAAGTTGTTGATTTGCGCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGCGCCAGCGGGCAGCAGGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATGCTGAGCCACCGTGGGGACCAAGGTTGCCAGGGCGCCTTCTACACCTACGACGCGTTCATCAAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGCGAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCTCCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAGATCACGCCGTCGGACCCGCCCTACTACGGCCGAGGACCCATACAGCTTACTCATAAGTACAACTACCAGCTAGCCGGGGACGCGTTGGGTCTGGACCTGGTGAACAACCCCGACCTGGTGTCAAGCGACCCCGTGGTGGCGTTCAGGACGGCCATCTGGTTCTGGATGACGGCGCAGTCACCCAAGCCGTCGTGCCACGACGTAATCACCAACCAGTGGACGCCGTCCGGCGATGACCGTAGCTCCGGGAGGCTCCCCGGCTACGGCATGGCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGCTACTCCACCGACAACGCCAAGGACCGGGTCGGCTACTACAAGAGGTACTGCGACATGTTCCGCGTAGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACTGGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTGCTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACTAGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATGACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATGCCCCTAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4495#0 TCGTGCCGAATTCGGCACGAGCACAATGGACAGTACAGAATTTGTAAGTTGTTGATTTGC 60
consensus_4495#1 -----ACACGATCGAGA--AACACAATTGACAGTACAGAATTTGTAAGTTGTTGATTTGC 53
* *** * * ****** ********************************
consensus_4495#0 GCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGC 120
consensus_4495#1 GCCATGAGAAGGCTTCTCCCGCTCGCCGGCGCCACGCTGCTGATCGCGGCGGCCGGCGGC 113
************************************************************
consensus_4495#0 GCCAGCGGGCAACAAGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATG 180
consensus_4495#1 GCCAGCGGGCAGCAGGCGGGTGTTGGGTCGATCATCACGCGGGCGATGTTCGAGTCGATG 173
*********** ** *********************************************
consensus_4495#0 CTGAACCACCGTGGGGACCAAGGTTGCCAAGGCGCCTTCTACACCTACGACGCGTTCATC 240
consensus_4495#1 CTGAGCCACCGTGGGGACCAAGGTTGCCAGGGCGCCTTCTACACCTACGACGCGTTCATC 233
**** ************************ ******************************
consensus_4495#0 AAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGC 300
consensus_4495#1 AAGGCCGCCGGAGATTTCCCTAGATTCGGCACGACCGGCAACGACGAAACGCGCCGGCGC 293
************************************************************
consensus_4495#0 GAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCT 360
consensus_4495#1 GAGCTCGCCGCTTTCTTTGGCCAGACCTCCCACGAAACTACAGGTGGATGGGCAACTGCT 353
************************************************************
consensus_4495#0 CCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAAATCACGCCGTCGGAACCG 420
consensus_4495#1 CCTGATGGACCCTTTGCTTGGGGATACTGCCGGGTGAACGAGATCACGCCGTCGGACCCG 413
***************************************** ************** ***
consensus_4495#0 CCCTACTACGGGCGAAGACC-ATACACCTTACTCATAAGTACAACTACCAGCTA-CCGGG 478
consensus_4495#1 CCCTACTACGGCCGAGGACCCATACAGCTTACTCATAAGTACAACTACCAGCTAGCCGGG 473
*********** *** **** ***** *************************** *****
consensus_4495#0 GACCC-TTGGGTCTGGAACTGGTGAACAACCCCGACCTGGTGTCAAG-GACCCCGTGGTG 536
consensus_4495#1 GACGCGTTGGGTCTGGACCTGGTGAACAACCCCGACCTGGTGTCAAGCGACCCCGTGGTG 533
*** * *********** ***************************** ************
consensus_4495#0 GGTGTTCAGGACGCCCATTTGTTTTTGGATGACGGCGCAGTCACCCAAGCCGTTGTGCCA 596
consensus_4495#1 G-CGTTCAGGACGGCCATCTGGTTCTGGATGACGGCGCAGTCACCCAAGCCGTCGTGCCA 592
* ********** **** ** ** **************************** ******
consensus_4495#0 GGATGTAATCACCAACCAGTGGACCCCTTCCGGCGATGACCGT--CTCCGGGAGG-TCCC 653
consensus_4495#1 CGACGTAATCACCAACCAGTGGACGCCGTCCGGCGATGACCGTAGCTCCGGGAGGCTCCC 652
** ******************** ** *************** ********** ****
consensus_4495#0 CGGGTACGGCATGCCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGTTATTC 713
consensus_4495#1 CGGCTACGGCATGGCCACCAACATCATCAACGGCGGTGAAGAGTGCGGCAAGGGCTACTC 712
*** ********* **************************************** ** **
consensus_4495#0 CACCGACAACGCCAAGGACCGGGTCGGTTACTACAAGAGGTACTGCGACATGTTCCGCGT 773
consensus_4495#1 CACCGACAACGCCAAGGACCGGGTCGGCTACTACAAGAGGTACTGCGACATGTTCCGCGT 772
*************************** ********************************
consensus_4495#0 AGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACT 833
consensus_4495#1 AGGATACGGAGATAACATAGCCTGCAGGGACCAGAAGCCCTACGGAGGAGGTTAAGCACT 832
************************************************************
consensus_4495#0 GGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTG 893
consensus_4495#1 GGAGACGATCGACTGGGAGTACGTCGTCATAAGCGGATTCTCCTAGTGCTAGTACAGCTG 892
************************************************************
consensus_4495#0 CTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACT 953
consensus_4495#1 CTGGTTGCTTGCTAATGGCTAGCTTAGCCTTCGCGTACATACGTATATGTACGTGATACT 952
************************************************************
consensus_4495#0 AGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATG 1013
consensus_4495#1 AGTACGAATAAAGCTAGCAGAGAGCGTTCGCGGATATCATGTAACAGATATGAGTATATG 1012
************************************************************
consensus_4495#0 ACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATG 1073
consensus_4495#1 ACACATGGTCGCTTATCTCACATGTTATTGTGAAATAATATTATTACTGGTGGAACGATG 1072
************************************************************
consensus_4495#0 CCCCTAGTTAAACTGAAAAAAAA 1096
consensus_4495#1 CCCCTAGTT-------------- 1081
*********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||