cluster # 4498

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Oryza sativa
cluster # 4498 cluster # 4498 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4498#0 length = 518 sequences # 1

consensus_4498#1 length = 426 sequences # 1
consensus_4498#2 length = 397 sequences # 1

consensusID : consensus_4498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [TATCAAAAAGGCTGTTTCGGTTNGCAAGCNCCTTGAGCGCAACCGCAAGGACAAGGACTCCAAGTTCCGCCTGATTNTCATCGAGTCCCGTATCCACCGTCTGGCTCGTTACTACAAGACCGTCGGCGTCCTGCCCCCCACCTGGAAGTACGAGTCCGCCACCGCCAGCACCCTCGTCGCATAGAGTGACTTTGGGTTTTTGTTCTGGGGGTGCGCGAGCATTGGTTGTGGGGATGCTCGCATTAAGGGGGTGTTTAACTACTACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGGAAAAAAGAATACTACTGCATTTGTCGACGTCTATATGAACTTGACGACGACCCTCATGACGGTCCTGGGGTCTACCATCATTGGCGGGAAGAACCCGTCCATACCACTAAGATAGGAGACTGGGCAAGTAAAAAGCCTGAGTTGCGGAAGACCCGCGACCTCTTTTCCATTGCCAATGAAGCGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003359             [TATCAAAAAGGCTGTTTCGGTTNGCAAGCNCCTTGAGCGCAACCGCAAGGACAAGGACTCCAAGTTCCGCCTGATTNTCATCGAGTCCCGTATCCACCGTCTGGCTCGTTACTACAAGACCGTCGGCGTCCTGCCCCCCACCTGGAAGTACGAGTCCGCCACCGCCAGCACCCTCGTCGCATAGAGTGACTTTGGGTTTTTGTTCTGGGGGTGCGCGAGCATTGGTTGTGGGGATGCTCGCATTAAGGGGGTGTTTAACTACTACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGGAAAAAAGAATACTACTGCATTTGTCGACGTCTATATGAACTTGACGACGACCCTCATGACGGTCCTGGGGTCTACCATCATTGGCGGGAAGAACCCGTCCATACCACTAAGATAGGAGACTGGGCAAGTAAAAAGCCTGAGTTGCGGAAGACCCGCGACCTCTTTTCCATTGCCAATGAAGCGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4498#0
TATCAAAAAGGCTGTTTCGGTTNGCAAGCNCCTTGAGCGCAACCGCAAGGACAAGGACTC
CAAGTTCCGCCTGATTNTCATCGAGTCCCGTATCCACCGTCTGGCTCGTTACTACAAGAC
CGTCGGCGTCCTGCCCCCCACCTGGAAGTACGAGTCCGCCACCGCCAGCACCCTCGTCGC
ATAGAGTGACTTTGGGTTTTTGTTCTGGGGGTGCGCGAGCATTGGTTGTGGGGATGCTCG
CATTAAGGGGGTGTTTAACTACTACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGG
AAAAAAGAATACTACTGCATTTGTCGACGTCTATATGAACTTGACGACGACCCTCATGAC
GGTCCTGGGGTCTACCATCATTGGCGGGAAGAACCCGTCCATACCACTAAGATAGGAGAC
TGGGCAAGTAAAAAGCCTGAGTTGCGGAAGACCCGCGACCTCTTTTCCATTGCCAATGAA
GCGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_4498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [ATCCCCCGTTTTGGCNGGTTATNCAANACCGTGGGNGTCTTCCCCCCCCCCTGGAAGTANGAGTCCGCCNCCGCAGCACCCTNGTCGCATAGAGTGACTTTGGGTTTTTGTTNTGGGGGTGCNCGANCATTGGTTGTGGGGATGCTCNCATTAAGGGGGTGTTTAACTACTACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGGAAAAAANAATACTACTGCATTTGTCGACGTNTATATGAACTTGACGACGACCCTCATGACGGTCCTGGGGTCTACCATCATTGGCGGGAANAACCCGTCCATACCNCTAANATAGGAGACTGGGCAAGTAAAAAGCCTGAGTTGNGGAAGACCCNCGACCTCTTTTCCCNTGCCAATGAAGCGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003735             [ATCCCCCGTTTTGGCNGGTTATNCAANACCGTGGGNGTCTTCCCCCCCCCCTGGAAGTANGAGTCCGCCNCCGCAGCACCCTNGTCGCATAGAGTGACTTTGGGTTTTTGTTNTGGGGGTGCNCGANCATTGGTTGTGGGGATGCTCNCATTAAGGGGGTGTTTAACTACTACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGGAAAAAANAATACTACTGCATTTGTCGACGTNTATATGAACTTGACGACGACCCTCATGACGGTCCTGGGGTCTACCATCATTGGCGGGAANAACCCGTCCATACCNCTAANATAGGAGACTGGGCAAGTAAAAAGCCTGAGTTGNGGAAGACCCNCGACCTCTTTTCCCNTGCCAATGAAGCGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4498#1
ATCCCCCGTTTTGGCNGGTTATNCAANACCGTGGGNGTCTTCCCCCCCCCCTGGAAGTAN
GAGTCCGCCNCCGCAGCACCCTNGTCGCATAGAGTGACTTTGGGTTTTTGTTNTGGGGGT
GCNCGANCATTGGTTGTGGGGATGCTCNCATTAAGGGGGTGTTTAACTACTACTTGGTTG
GTTTGGTCGTAAACGGAGTTTGGGCAGGAAAAAANAATACTACTGCATTTGTCGACGTNT
ATATGAACTTGACGACGACCCTCATGACGGTCCTGGGGTCTACCATCATTGGCGGGAANA
ACCCGTCCATACCNCTAANATAGGAGACTGGGCAAGTAAAAAGCCTGAGTTGNGGAAGAC
CCNCGACCTCTTTTCCCNTGCCAATGAAGCGCATCTATCGTGGTAAAAAAAAAAAAAAAA
AAAAAA

consensusID : consensus_4498#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [GNNGGGGTCTTGCCCCCCACCTGAAAGTANGAGTNCGCCACCGCCAGCACCCTCGTGGCATAAAGTGANTTTGGGTTTTTNTTNTGGGGGTGCNCNAGCATTGNTTNTGGGNATGCTCGCATTAAGGGGGTGTTTAANTACAACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGGAAAAAANAATACTACTGCATTTGTCGACGTNTATATGAACTTGACGACGACCCTCATGACGGTCNTGGGGTNTACCATCATTGGCGGGAAGAACCCGTCCATACCACTAAGATAGGAGACTGGGCAAGTAAAAAGCCTGAGTNGGGGAAGACCCGCGACCTNTTTTCCCTNCCCAATGAAGNGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003608             [GNNGGGGTCTTGCCCCCCACCTGAAAGTANGAGTNCGCCACCGCCAGCACCCTCGTGGCATAAAGTGANTTTGGGTTTTTNTTNTGGGGGTGCNCNAGCATTGNTTNTGGGNATGCTCGCATTAAGGGGGTGTTTAANTACAACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGGAAAAAANAATACTACTGCATTTGTCGACGTNTATATGAACTTGACGACGACCCTCATGACGGTCNTGGGGTNTACCATCATTGGCGGGAAGAACCCGTCCATACCACTAAGATAGGAGACTGGGCAAGTAAAAAGCCTGAGTNGGGGAAGACCCGCGACCTNTTTTCCCTNCCCAATGAAGNGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4498#2
GNNGGGGTCTTGCCCCCCACCTGAAAGTANGAGTNCGCCACCGCCAGCACCCTCGTGGCA
TAAAGTGANTTTGGGTTTTTNTTNTGGGGGTGCNCNAGCATTGNTTNTGGGNATGCTCGC
ATTAAGGGGGTGTTTAANTACAACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGGA
AAAAANAATACTACTGCATTTGTCGACGTNTATATGAACTTGACGACGACCCTCATGACG
GTCNTGGGGTNTACCATCATTGGCGGGAAGAACCCGTCCATACCACTAAGATAGGAGACT
GGGCAAGTAAAAAGCCTGAGTNGGGGAAGACCCGCGACCTNTTTTCCCTNCCCAATGAAG
NGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4498#0      TATCAAAAAGGCTGTTTCGGTTNGCAAGCNCCTTGAGCGCAACCGCAAGGACAAGGACTC 60
consensus_4498#1      ------------------------------------------------------------
consensus_4498#2      ------------------------------------------------------------
                                                                                  

consensus_4498#0      CAAGTTCCGCCTGATTNTCATCGAGTCCCGTATCCACCGTCTGGCTCGTTACTACAAGAC 120
consensus_4498#1      -------------------------------ATCCCCCGTTTTGGCNGGTTATNCAANAC 29
consensus_4498#2      ------------------------------------------------------------
                                                                                  

consensus_4498#0      CGTCGGCGTCCTGCCCCCCACCTGGAAGTACGAGTCCGCCACCGCCAGCACCCTCGTCGC 180
consensus_4498#1      CGTGGGNGTCTTCCCCCCCCCCTGGAAGTANGAGTCCGCCNCCGC-AGCACCCTNGTCGC 88
consensus_4498#2      -GNNGGGGTCTTGCCCCCCACCTGAAAGTANGAGTNCGCCACCGCCAGCACCCTCGTGGC 59
                       *  ** *** * ****** **** ***** **** **** **** ******** ** **

consensus_4498#0      ATAGAGTGACTTTGGGTTTTTGTTCTGGGGGTGCGCGAGCATTGGTTGTGGGGATGCTCG 240
consensus_4498#1      ATAGAGTGACTTTGGGTTTTTGTTNTGGGGGTGCNCGANCATTGGTTGTGGGGATGCTCN 148
consensus_4498#2      ATAAAGTGANTTTGGGTTTTTNTTNTGGGGGTGCNCNAGCATTGNTTNTGGGNATGCTCG 119
                      *** ***** *********** ** ********* * * ***** ** **** ****** 

consensus_4498#0      CATTAAGGGGGTGTTTAACTACTACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGG 300
consensus_4498#1      CATTAAGGGGGTGTTTAACTACTACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGG 208
consensus_4498#2      CATTAAGGGGGTGTTTAANTACAACTTGGTTGGTTTGGTCGTAAACGGAGTTTGGGCAGG 179
                      ****************** *** *************************************

consensus_4498#0      AAAAAAGAATACTACTGCATTTGTCGACGTCTATATGAACTTGACGACGACCCTCATGAC 360
consensus_4498#1      AAAAAANAATACTACTGCATTTGTCGACGTNTATATGAACTTGACGACGACCCTCATGAC 268
consensus_4498#2      AAAAAANAATACTACTGCATTTGTCGACGTNTATATGAACTTGACGACGACCCTCATGAC 239
                      ****** *********************** *****************************

consensus_4498#0      GGTCCTGGGGTCTACCATCATTGGCGGGAAGAACCCGTCCATACCACTAAGATAGGAGAC 420
consensus_4498#1      GGTCCTGGGGTCTACCATCATTGGCGGGAANAACCCGTCCATACCNCTAANATAGGAGAC 328
consensus_4498#2      GGTCNTGGGGTNTACCATCATTGGCGGGAAGAACCCGTCCATACCACTAAGATAGGAGAC 299
                      **** ****** ****************** ************** **** *********

consensus_4498#0      TGGGCAAGTAAAAAGCCTGAGTTGCGGAAGACCCGCGACCTCTTTTCCATTGCCAATGAA 480
consensus_4498#1      TGGGCAAGTAAAAAGCCTGAGTTGNGGAAGACCCNCGACCTCTTTTCCCNTGCCAATGAA 388
consensus_4498#2      TGGGCAAGTAAAAAGCCTGAGTNGGGGAAGACCCGCGACCTNTTTTCCCTNCCCAATGAA 359
                      ********************** * ********* ****** ******    ********

consensus_4498#0      GCGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA 518
consensus_4498#1      GCGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA 426
consensus_4498#2      GNGCATCTATCGTGGTAAAAAAAAAAAAAAAAAAAAAA 397
                      * ************************************