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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1089 fasta sequence
[ACTCGCTCTCCGTTCACCACTCCAAACGCGTAGCGCTAGCGCCGCCCGCCGCACGATGAGCGCGGTGCCCGTCGTGTCCTCCGCGCTGGCCGGACCAGCGGTCGCGGTCGCGGTCGCCAGGCCCGCTTCCGGGTCCGTCACTCGCCTCCGTGCGCCGGCGCCCCACGGCGTGCCGGCCGGCTCCGTGCCCCTCGCGTCCGGACTTGCCAACTGCTACCGCCGCTCCGCCGCCGCCGCCCGGAGGCTTCCGATCCCGTCTGCAGCGGGGGGCGGCACAGTTGGGGATGCTTTTGTTATAGAAGACACAACAAATGTGAAATTTCCTCGAGAGATAGCTGTTCCGGGCTACACCGAGCCTTTGGTTATTCTTGGAACAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGCGTTGACACTATGCGATGGAGAGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGACTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATGACATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTTCCAGAAAACCTTTCTAGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAAACTTCTGATCTCAATTGCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTTCTTGGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACTACTGCTGGAGGCTATTCTTACAAAGTGACAGAAACCGAAATCATGGTTCGCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGAACAATTCTAGTTTGGCCATCAGCTCATCGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGGTTATATATATGAATATCTAATTAAACTCAAATACATTTCTAACATGAACATT]
[+] EMBL AK067650 [ACTCGCTCTCCGTTCACCACTCCAAACGCGTAGCGCTAGCGCCGCCCGCCGCACGATGAGCGCGGTGCCCGTCGTGTCCTCCGCGCTGGCCGGACCAGCGGTCGCGGTCGCGGTCGCCAGGCCCGCTTCCGGGTCCGTCACTCGCCTCCGTGCGCCGGCGCCCCACGGCGTGCCGGCCGGCTCCGTGCCCCTCGCGTCCGGACTTGCCAACTGCTACCGCCGCTCCGCCGCCGCCGCCCGGAGGCTTCCGATCCCGTCTGCAGCGGGGGGCGGCACAGTTGGGGATGCTTTTGTTATAGAAGACACAACAAATGTGAAATTTCCTCGAGAGATAGCTGTTCCGGGCTACACCGAGCCTTTGGTTATTCTTGGAACAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGCGTTGACACTATGCGATGGAGAGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGACTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATGACATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTTCCAGAAAACCTTTCTAGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAAACTTCTGATCTCAATTGCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTTCTTGGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACTACTGCTGGAGGCTATTCTTACAAAGTGACAGAAACCGAAATCATGGTTCGCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGAACAATTCTAGTTTGGCCATCAGCTCATCGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGGTTATATATATGAATATCTAATTAAACTCAAATACATTTCTAACATGAACATT]
consensusID : consensus_4507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 798 fasta sequence
[CTGTTTAAATTTAACCTTTAAGTGTGCCACATTATATTTGTTTACAGTTTGCAATTTGAATTTTAGCTCACTTCTAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGTGTTGACACTATGCGATGGAGTGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGTCTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCATTAGGGATGTTGATGGAAAGACGTTTGTGAAGGCACTAGATGACATTATTGCTCG-TCAAATAAAAAAACCA-AGTGCTGAGGAAGA-ACAGGGCCTGTC-AACTTT-CCAGAAA-ACCTTTCTAGGGCGTAGTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCA-CTGTTAATTATGCACTATATGATGGCTTCTTCGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTGAGAAACCGAAATCATGGTTCCCTAAG-ACAAAGCATGCGCTGAATCCTGATGGGTGTTTTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAGACTCAAATACATTTCAAACATGAACATTGGTGTTAAAAAAAAAA]
[-] EMBL CB631768 [CTGTTTAAATTTAACCTTTAAGTGTGCCACATTATATTTGTTTACAGTTTGCAATTTGAATTTTAGCTCACTTCTAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGCATTCTATGTTGATTGCTCAATCGGTGTTGACACTATGCGATGGAGTGAAAAGGTTGGTATTGAGACCTTTGATGCTTCCTCAGTTTTTGTCTCCATTTTTAAAGCACCGGTTGTGAAATCATTGAGTATAATTCTCATTAGGGATGTTGATGGAAAGACGTTTGTGAAGGCACTAGATGACATTATTGCTCG TCAAATAAAAAAACCA AGTGCTGAGGAAGA ACAGGGCCTGTC AACTTT CCAGAAA ACCTTTCTAGGGCGTAGTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGATGCTGAAATCACATCAGCCA CTGTTAATTATGCACTATATGATGGCTTCTTCGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTGAGAAACCGAAATCATGGTTCCCTAAG ACAAAGCATGCGCTGAATCCTGATGGGTGTTTTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAGACTCAAATACATTTCAAACATGAACATTGGTG ]
[+] EMBL BI813198 [ AAGACCTTT TGAAGCCACTAGATCACATTATTGCTCGTTCAAATAAAAAACCCACAGT CTGAGGAAGACACA GGCCTGTCAAACTTTCCCAGAAACACCTTTCTAGGGCGTATTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCTTGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGAT CTGAAATCACATCA CCACCTGTTAATTAT CACTATATGATGGCTTCTTCGGTAGTTCTCCAGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTGAGAAACCGAAATCATGGTTCCCTAAGCACCAAGCATGCGCTGAATCCTGATGGGTGTTCTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTTTAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAAACTCAAATACATTTCCAACCCGAACATTGGTGTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4507#0 ACTCGCTCTCCGTTCACCACTCCAAACGCGTAGCGCTAGCGCCGCCCGCCGCACGATGAG 60
consensus_4507#1 ------------------------------------------------------------
consensus_4507#0 CGCGGTGCCCGTCGTGTCCTCCGCGCTGGCCGGACCAGCGGTCGCGGTCGCGGTCGCCAG 120
consensus_4507#1 ------------------------------------------------------------
consensus_4507#0 GCCCGCTTCCGGGTCCGTCACTCGCCTCCGTGCGCCGGCGCCCCACGGCGTGCCGGCCGG 180
consensus_4507#1 ------------------------------------------------------------
consensus_4507#0 CTCCGTGCCCCTCGCGTCCGGACTTGCCAACTGCTACCGCCGCTCCGCCGCCGCCGCCCG 240
consensus_4507#1 ------------------------------------------------------------
consensus_4507#0 GAGGCTTCCGATCCCGTCTGCAGCGGGGGGCGGCACAGTTGGGGATGCTTTTGTTATAGA 300
consensus_4507#1 --------------------------------------------------CTGTTTAAAT 10
**** *
consensus_4507#0 AGACACAACAAATGTGAAATTTCCTCGAGAGATAGCTGTTC-CGGGCTACA--CCGAGCC 357
consensus_4507#1 TTAACCTTTAAGTGTGCCACATT--------ATATTTGTTTACAGTTTGCAATTTGAATT 62
* * ** **** * * *** **** * * * ** **
consensus_4507#0 TTTGGTTATTCTTGGAACAGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGC 417
consensus_4507#1 TTAGCTCACTTCT-----AGGTTACAGAGAGAAGTTCTTTCTAAAAATATATGCTGCTGC 117
** * * * * * ******************************************
consensus_4507#0 ATTCTATGTTGATTGCTCAATCGGCGTTGACACTATGCGATGGAGAGAAAAGGTTGGTAT 477
consensus_4507#1 ATTCTATGTTGATTGCTCAATCGGTGTTGACACTATGCGATGGAGTGAAAAGGTTGGTAT 177
************************ ******************** **************
consensus_4507#0 TGAGACCTTTGATGCTTCCTCAGTTTTTGACTCCATTTTTAAAGCACCGGTTGTGAAATC 537
consensus_4507#1 TGAGACCTTTGATGCTTCCTCAGTTTTTGTCTCCATTTTTAAAGCACCGGTTGTGAAATC 237
***************************** ******************************
consensus_4507#0 ATTGAGTATAATTCTCGTTAGAGATGTTGATGGCAAGACGTTTGTGAAGGCTCTAGATGA 597
consensus_4507#1 ATTGAGTATAATTCTCATTAGGGATGTTGATGGAAAGACGTTTGTGAAGGCACTAGATGA 297
**************** **** *********** ***************** ********
consensus_4507#0 CATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGAGCCTGTCAACTTT 657
consensus_4507#1 CATTATTGCTCGTCAAATAAAAAAACCAAGTGCTGAGGAAGAACAGGGCCTGTCAACTTT 357
********************************************** *************
consensus_4507#0 CCAGAAAACCTTTCTAGGGCGTAGTCTGAAACAAGGAACAACTGTCTATCTAACTTGGCT 717
consensus_4507#1 CCAGAAAACCTTTCTAGGGCGTAGTCTCAAACAAGGAACAACTGTCTATCTAACTTGGCT 417
*************************** ********************************
consensus_4507#0 TGAACCCTCGAAACTTCTGATCTCAATTGCAGGAAACCAAGATCCATGTCAAGTTGATGC 777
consensus_4507#1 TGAACCCTCGAGACTTCTGATCTCAATTTCAGGAAACCAAGATCCATGTCAAGTTGATGC 477
*********** **************** *******************************
consensus_4507#0 TGAAATCACATCAGCCACTGTTAATTATGCGCTATACGATGGCTTCTTGGGTAGTTCTCC 837
consensus_4507#1 TGAAATCACATCAGCCACTGTTAATTATGCACTATATGATGGCTTCTTCGGTAGTTCTCC 537
****************************** ***** *********** ***********
consensus_4507#0 AGTATCCCCTACTCTGAGATCTTCTACTGCACTACTGCTGGAGGCTATTCTTACAAAGTG 897
consensus_4507#1 AGTATCCCCTACTCTGAGATCTTCTACTGCACAACTGCTAGAAGCTATTCTTACAAAGTG 597
******************************** ****** ** *****************
consensus_4507#0 ACAGAAACCGAAATCATGGTTCGCTAAGACAAAGCATGCGCTGAATCCTGATGGGTGAAC 957
consensus_4507#1 A--GAAACCGAAATCATGGTTCCCTAAGACAAAGCATGCGCTGAATCCTGATGGGTG--- 652
* ******************* **********************************
consensus_4507#0 AATTCTAGTTTGGCCATCAGCTCATCGCCGACTACAAATTTTCATCTTAGAGTTTATTTT 1017
consensus_4507#1 --TTTTAATTTGGCCATCAGCTCATTGCCGACTACAAATTTTCATCTTAGAGTTTATTTT 710
** ** ***************** **********************************
consensus_4507#0 TAATAATTTTTAATGTTTGGTTATATATATGAATATCTAATTAAACTCAAATACATTTCT 1077
consensus_4507#1 TAATAATTTTTAATGTTTGATTATATATATGAATACCTAATTAGACTCAAATACATTTCA 770
******************* *************** ******* ***************
consensus_4507#0 AACATGAACATT---------------- 1089
consensus_4507#1 AACATGAACATTGGTGTTAAAAAAAAAA 798
************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||