cluster # 451

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Oryza sativa
cluster # 451 cluster # 451 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_451#0 length = 605 sequences # 1

consensus_451#1 length = 375 sequences # 1

consensusID : consensus_451#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [GCCTTCTCCACTTCTTTTCTCACCACTCCCAGCAATGGCGGCGCACCTTCTCCCTCTCCGCGCCTTCTTCACTCCTCACGACGGCTGCACGCTTTCTCTCCCCGCGACGGCGGCGCATCTTCTCCATTCCCCAGCTCGTCACTCCTCAGCGACGGCGGCTCGCCTTCTCTACTCCCCGACTCGTCTCTCCCCTGCGGTGAAACCAACGGCTCACCACTCCCCGGCGACATGATGGTGCGGCCTCCACAGATCTGGAGCCGCCTCTTCCTTGTCTCCATCACAACACCAGGCACGCGTCATCCCCGACACCGATGCCAAAGGTCAGTTTCCCCCCTCATCTTCTCCCTTCCCCCATCCTCTATACCTCTAATGTCGTCGGAAGCGGTTGTCTGCAGGGTAGCGAGTGGCCAGAATTCTCCACGGTGAGCAACGGCCACAAGTGGTCTTGAGTTTCCAAATCCGTGTGATAAATTTTATAATATTGATTATGTGATGTGTGATCGATTATTTAATGTGTATATTATGTGATTTGTTTTGTTGGAATCATCCATTTGATTTATGAACTTTGTGATTCTTTTTCTCTCAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA759954             [GCCTTCTCCACTTCTTTTCTCACCACTCCCAGCAATGGCGGCGCACCTTCTCCCTCTCCGCGCCTTCTTCACTCCTCACGACGGCTGCACGCTTTCTCTCCCCGCGACGGCGGCGCATCTTCTCCATTCCCCAGCTCGTCACTCCTCAGCGACGGCGGCTCGCCTTCTCTACTCCCCGACTCGTCTCTCCCCTGCGGTGAAACCAACGGCTCACCACTCCCCGGCGACATGATGGTGCGGCCTCCACAGATCTGGAGCCGCCTCTTCCTTGTCTCCATCACAACACCAGGCACGCGTCATCCCCGACACCGATGCCAAAGGTCAGTTTCCCCCCTCATCTTCTCCCTTCCCCCATCCTCTATACCTCTAATGTCGTCGGAAGCGGTTGTCTGCAGGGTAGCGAGTGGCCAGAATTCTCCACGGTGAGCAACGGCCACAAGTGGTCTTGAGTTTCCAAATCCGTGTGATAAATTTTATAATATTGATTATGTGATGTGTGATCGATTATTTAATGTGTATATTATGTGATTTGTTTTGTTGGAATCATCCATTTGATTTATGAACTTTGTGATTCTTTTTCTCTCAAAAAAAAAAAAAAAAAAAAA]




>consensus_451#0
GCCTTCTCCACTTCTTTTCTCACCACTCCCAGCAATGGCGGCGCACCTTCTCCCTCTCCG
CGCCTTCTTCACTCCTCACGACGGCTGCACGCTTTCTCTCCCCGCGACGGCGGCGCATCT
TCTCCATTCCCCAGCTCGTCACTCCTCAGCGACGGCGGCTCGCCTTCTCTACTCCCCGAC
TCGTCTCTCCCCTGCGGTGAAACCAACGGCTCACCACTCCCCGGCGACATGATGGTGCGG
CCTCCACAGATCTGGAGCCGCCTCTTCCTTGTCTCCATCACAACACCAGGCACGCGTCAT
CCCCGACACCGATGCCAAAGGTCAGTTTCCCCCCTCATCTTCTCCCTTCCCCCATCCTCT
ATACCTCTAATGTCGTCGGAAGCGGTTGTCTGCAGGGTAGCGAGTGGCCAGAATTCTCCA
CGGTGAGCAACGGCCACAAGTGGTCTTGAGTTTCCAAATCCGTGTGATAAATTTTATAAT
ATTGATTATGTGATGTGTGATCGATTATTTAATGTGTATATTATGTGATTTGTTTTGTTG
GAATCATCCATTTGATTTATGAACTTTGTGATTCTTTTTCTCTCAAAAAAAAAAAAAAAA
AAAAA

consensusID : consensus_451#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [GCACGCGTTTCTCTCCCCGCGACGGCGGCGCATCTTCTCCATTCCCCAGCTCGTCACTCCTCAGCGACGGCGGCTCGCCTTCTCTACTCCCCGACTCGTCTCTCCCCTGCGGTGAAACCAACGGCTCACCACTCCCCGGCGACATGATGGTGCGGCCTCCACAGATCTGGAGCCGCCTCTTCCTTGTCTCCATCACAACACCAGGCACGCGTCATCCCCGACACCGATGCCAAAGGGTAGCGAGTGGCCAGAATTCTCCACGGTGAGCAACGGCCACAAGTGGTCTTGAATTTCCAAATCCGTGTGATAAATTTTGTAATATTGATTATGTGATGTGTGATCGATTATTTAATGTGTATATTATGTGATTTGTTT]

[+] EMBL CB680885             [GCACGCGTTTCTCTCCCCGCGACGGCGGCGCATCTTCTCCATTCCCCAGCTCGTCACTCCTCAGCGACGGCGGCTCGCCTTCTCTACTCCCCGACTCGTCTCTCCCCTGCGGTGAAACCAACGGCTCACCACTCCCCGGCGACATGATGGTGCGGCCTCCACAGATCTGGAGCCGCCTCTTCCTTGTCTCCATCACAACACCAGGCACGCGTCATCCCCGACACCGATGCCAAAGGGTAGCGAGTGGCCAGAATTCTCCACGGTGAGCAACGGCCACAAGTGGTCTTGAATTTCCAAATCCGTGTGATAAATTTTGTAATATTGATTATGTGATGTGTGATCGATTATTTAATGTGTATATTATGTGATTTGTTT]




>consensus_451#1
GCACGCGTTTCTCTCCCCGCGACGGCGGCGCATCTTCTCCATTCCCCAGCTCGTCACTCC
TCAGCGACGGCGGCTCGCCTTCTCTACTCCCCGACTCGTCTCTCCCCTGCGGTGAAACCA
ACGGCTCACCACTCCCCGGCGACATGATGGTGCGGCCTCCACAGATCTGGAGCCGCCTCT
TCCTTGTCTCCATCACAACACCAGGCACGCGTCATCCCCGACACCGATGCCAAAGGGTAG
CGAGTGGCCAGAATTCTCCACGGTGAGCAACGGCCACAAGTGGTCTTGAATTTCCAAATC
CGTGTGATAAATTTTGTAATATTGATTATGTGATGTGTGATCGATTATTTAATGTGTATA
TTATGTGATTTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_451#0      GCCTTCTCCACTTCTTTTCTCACCACTCCCAGCAATGGCGGCGCACCTTCTCCCTCTCCG 60
consensus_451#1      ------------------------------------------------------------
                                                                                 

consensus_451#0      CGCCTTCTTCACTCCTCACGACGGCTGCACGC-TTTCTCTCCCCGCGACGGCGGCGCATC 119
consensus_451#1      --------------------------GCACGCGTTTCTCTCCCCGCGACGGCGGCGCATC 34
                                               ****** ***************************

consensus_451#0      TTCTCCATTCCCCAGCTCGTCACTCCTCAGCGACGGCGGCTCGCCTTCTCTACTCCCCGA 179
consensus_451#1      TTCTCCATTCCCCAGCTCGTCACTCCTCAGCGACGGCGGCTCGCCTTCTCTACTCCCCGA 94
                     ************************************************************

consensus_451#0      CTCGTCTCTCCCCTGCGGTGAAACCAACGGCTCACCACTCCCCGGCGACATGATGGTGCG 239
consensus_451#1      CTCGTCTCTCCCCTGCGGTGAAACCAACGGCTCACCACTCCCCGGCGACATGATGGTGCG 154
                     ************************************************************

consensus_451#0      GCCTCCACAGATCTGGAGCCGCCTCTTCCTTGTCTCCATCACAACACCAGGCACGCGTCA 299
consensus_451#1      GCCTCCACAGATCTGGAGCCGCCTCTTCCTTGTCTCCATCACAACACCAGGCACGCGTCA 214
                     ************************************************************

consensus_451#0      TCCCCGACACCGATGCCAAAGGTCAGTTTCCCCCCTCATCTTCTCCCTTCCCCCATCCTC 359
consensus_451#1      TCCCCGACACCGATGCCAAAGG-------------------------------------- 236
                     **********************                                      

consensus_451#0      TATACCTCTAATGTCGTCGGAAGCGGTTGTCTGCAGGGTAGCGAGTGGCCAGAATTCTCC 419
consensus_451#1      -------------------------------------GTAGCGAGTGGCCAGAATTCTCC 259
                                                          ***********************

consensus_451#0      ACGGTGAGCAACGGCCACAAGTGGTCTTGAGTTTCCAAATCCGTGTGATAAATTTTATAA 479
consensus_451#1      ACGGTGAGCAACGGCCACAAGTGGTCTTGAATTTCCAAATCCGTGTGATAAATTTTGTAA 319
                     ****************************** ************************* ***

consensus_451#0      TATTGATTATGTGATGTGTGATCGATTATTTAATGTGTATATTATGTGATTTGTTTTGTT 539
consensus_451#1      TATTGATTATGTGATGTGTGATCGATTATTTAATGTGTATATTATGTGATTTGTTT---- 375
                     ********************************************************    

consensus_451#0      GGAATCATCCATTTGATTTATGAACTTTGTGATTCTTTTTCTCTCAAAAAAAAAAAAAAA 599
consensus_451#1      ------------------------------------------------------------
                                                                                 

consensus_451#0      AAAAAA 605
consensus_451#1      ------