cluster # 4516

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Oryza sativa
cluster # 4516 cluster # 4516 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4516#0 length = 958 sequences # 2

consensus_4516#1 length = 461 sequences # 1

consensusID : consensus_4516#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 958
fasta sequence

                              [GGCGATGGAATCCGACGGCGAGGAGGAGGCCGCGGCGACCCCGGGGGCCGGCGGCGCGCCGGCGGCGGGGAGGCTGAAGGGCTGCCCGGAGCTCATGGTGGACGACGACATGCGGGAGATGGCGAAGACGGCCGCCTGGAGCGTCAGCTCCTGCAAGCCCGGCAACGGCGTCGCCTCCCTCCGCGACGACAACCTCGACACCTACTGGCAGTCGGACGGGGCGCAGCCGCACTTGGTGAACATTCAGTTCCAGAAGAAGGTGCAGCTGCAGCTTGTCGTGGTGTATGTGGATTTCAAGCTCGACGAGAGCTATACGCCTAGCAAGATCTCTGTCCGGGCCGGCGATGGCTTCCACAATCTCAAGGAAATTAAAACTGTGGAGCTTTCAAAGCCAGTTGGGTGGGTTCATATATCATTATCTGGAGCTGATCCCCGAGAAACATTCATTCATACATTTATGCTCCAAATTTCGGTGTTGTCCAATCACTTGAATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACCGAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTACTGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCTCCACATTGGAGCTTTTGTTGAAGATTTTGGATAGCTCAGCACACATGTGAACAGATTGTGTGGTCGATCCCATTCTCTGTGCTTCAGAATTCAGTCTCGCATGATGTGCACCCAGAAATCAACACTGGAAGAAGCATCTGAAGCATCAAGTCTCTCATTGCCTTTCCGGA-GAATTGCTGTATTTTTAATAT-GTAG-AAAATTGATATTGGATTCATCTGTGTGTACGAGCTACATTTTCGTCCATGG-AGTGTAACATTATCCTCCTCTCGTGTGCAAGAGAAGGTTATTTATTCATTGATATTGAGGATGGCTGATGCT]

[+] EMBL AK064624             [GGCGATGGAATCCGACGGCGAGGAGGAGGCCGCGGCGACCCCGGGGGCCGGCGGCGCGCCGGCGGCGGGGAGGCTGAAGGGCTGCCCGGAGCTCATGGTGGACGACGACATGCGGGAGATGGCGAAGACGGCCGCCTGGAGCGTCAGCTCCTGCAAGCCCGGCAACGGCGTCGCCTCCCTCCGCGACGACAACCTCGACACCTACTGGCAGTCGGACGGGGCGCAGCCGCACTTGGTGAACATTCAGTTCCAGAAGAAGGTGCAGCTGCAGCTTGTCGTGGTGTATGTGGATTTCAAGCTCGACGAGAGCTATACGCCTAGCAAGATCTCTGTCCGGGCCGGCGATGGCTTCCACAATCTCAAGGAAATTAAAACTGTGGAGCTTTCAAAGCCAGTTGGGTGGGTTCATATATCATTATCTGGAGCTGATCCCCGAGAAACATTCATTCATACATTTATGCTCCAAATTTCGGTGTTGTCCAATCACTTGAATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACCGAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTACTGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCTCCACATTGGAGCTTTTGTTGAAGATTTTGGATAGCTCAGCACACATGTGAACAGATTGTGTGGTCGATCCCATTCTCTGTGCTTCAGAATTCAGTCTCGCATGATGTGCACCCAGAAATCAACACTGGAAGAAGCATCTGAAGCATCAAGTCTCTCATTGCCTTTCCGGA GAATTGCTGTATTTTTAATAT GTAG AAAATTGATATTGGATTCATCTGTGTGTACGAGCTACATTTTCGTCCATGG AGTGTAACATTATCCTCCTCTCGTGTGCAAGAGAAGGTTATTTATTCATTGATATTGAGGATGGCTGATGCT]
[+] EMBL OS0444A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACCGAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTACTGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCTCCACATTGGAGCTTTTGTTGAAGATTTTGGATAGCTCAGCACACATGTGAACAGATTGTGTGGTCGATCCCATTCTCTGTGCTTCAGAATTCAGTCTCGCATGATGTGCACCCAGAAATCAACACTGGAAGAAGCATCTGAAGCATCAAGTCTCTCATTGCCTTTCCGGAGGAATTGCTGTATTTTTAATATGGTAGAAAAATTGATATTGGATTCATCTGTGTGTACGAGCTACATTTTCGTCCATGGNGGTGTAca                                                                ]




>consensus_4516#0
GGCGATGGAATCCGACGGCGAGGAGGAGGCCGCGGCGACCCCGGGGGCCGGCGGCGCGCC
GGCGGCGGGGAGGCTGAAGGGCTGCCCGGAGCTCATGGTGGACGACGACATGCGGGAGAT
GGCGAAGACGGCCGCCTGGAGCGTCAGCTCCTGCAAGCCCGGCAACGGCGTCGCCTCCCT
CCGCGACGACAACCTCGACACCTACTGGCAGTCGGACGGGGCGCAGCCGCACTTGGTGAA
CATTCAGTTCCAGAAGAAGGTGCAGCTGCAGCTTGTCGTGGTGTATGTGGATTTCAAGCT
CGACGAGAGCTATACGCCTAGCAAGATCTCTGTCCGGGCCGGCGATGGCTTCCACAATCT
CAAGGAAATTAAAACTGTGGAGCTTTCAAAGCCAGTTGGGTGGGTTCATATATCATTATC
TGGAGCTGATCCCCGAGAAACATTCATTCATACATTTATGCTCCAAATTTCGGTGTTGTC
CAATCACTTGAATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACC
GAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTAC
TGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCTCCACATTGGAGCTTTTGTTG
AAGATTTTGGATAGCTCAGCACACATGTGAACAGATTGTGTGGTCGATCCCATTCTCTGT
GCTTCAGAATTCAGTCTCGCATGATGTGCACCCAGAAATCAACACTGGAAGAAGCATCTG
AAGCATCAAGTCTCTCATTGCCTTTCCGGAGAATTGCTGTATTTTTAATATGTAGAAAAT
TGATATTGGATTCATCTGTGTGTACGAGCTACATTTTCGTCCATGGAGTGTAACATTATC
CTCCTCTCGTGTGCAAGAGAAGGTTATTTATTCATTGATATTGAGGATGGCTGATGCT

consensusID : consensus_4516#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [GAATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGNCCAAGACCGAATCATGTNCCCCATCANCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTACTGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCTCCACATTGGAGCTTTTGTTGAAGATTTTGGATAGCTCAGCACACATGTGAACAGATTGTGTGGTCGATCCCATTCTCTGTGCTTCAGAATTCAGTCTCGCATGATGTGCACCCAGAAATCAACACTGGAAGAAGCATCTGAAGCATCAAGTCTCTCATTGCCTTTCCGGAGAATTGCTGTATTTTTAATATGTAGAAAATTGATATTGGATTCATCTGTGTGTACGAGCTACATTTTCGTCCATGGAGTGTAACATTATCCTCCTCTCGTGTGCAAGAGAAGGTTATTTATTCATTGAAAAAAAAAAAAA]

[+] EMBL C98044               [GAATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGNCCAAGACCGAATCATGTNCCCCATCANCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTACTGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCTCCACATTGGAGCTTTTGTTGAAGATTTTGGATAGCTCAGCACACATGTGAACAGATTGTGTGGTCGATCCCATTCTCTGTGCTTCAGAATTCAGTCTCGCATGATGTGCACCCAGAAATCAACACTGGAAGAAGCATCTGAAGCATCAAGTCTCTCATTGCCTTTCCGGAGAATTGCTGTATTTTTAATATGTAGAAAATTGATATTGGATTCATCTGTGTGTACGAGCTACATTTTCGTCCATGGAGTGTAACATTATCCTCCTCTCGTGTGCAAGAGAAGGTTATTTATTCATTGAAAAAAAAAAAAA]




>consensus_4516#1
GAATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGNCCAAGACCGAATCATGT
NCCCCATCANCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTACTGTTAGGTG
ACAGCTGACTAATTTAATTCCGTGGAACCCTCCACATTGGAGCTTTTGTTGAAGATTTTG
GATAGCTCAGCACACATGTGAACAGATTGTGTGGTCGATCCCATTCTCTGTGCTTCAGAA
TTCAGTCTCGCATGATGTGCACCCAGAAATCAACACTGGAAGAAGCATCTGAAGCATCAA
GTCTCTCATTGCCTTTCCGGAGAATTGCTGTATTTTTAATATGTAGAAAATTGATATTGG
ATTCATCTGTGTGTACGAGCTACATTTTCGTCCATGGAGTGTAACATTATCCTCCTCTCG
TGTGCAAGAGAAGGTTATTTATTCATTGAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4516#0      GGCGATGGAATCCGACGGCGAGGAGGAGGCCGCGGCGACCCCGGGGGCCGGCGGCGCGCC 60
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      GGCGGCGGGGAGGCTGAAGGGCTGCCCGGAGCTCATGGTGGACGACGACATGCGGGAGAT 120
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      GGCGAAGACGGCCGCCTGGAGCGTCAGCTCCTGCAAGCCCGGCAACGGCGTCGCCTCCCT 180
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      CCGCGACGACAACCTCGACACCTACTGGCAGTCGGACGGGGCGCAGCCGCACTTGGTGAA 240
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      CATTCAGTTCCAGAAGAAGGTGCAGCTGCAGCTTGTCGTGGTGTATGTGGATTTCAAGCT 300
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      CGACGAGAGCTATACGCCTAGCAAGATCTCTGTCCGGGCCGGCGATGGCTTCCACAATCT 360
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      CAAGGAAATTAAAACTGTGGAGCTTTCAAAGCCAGTTGGGTGGGTTCATATATCATTATC 420
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      TGGAGCTGATCCCCGAGAAACATTCATTCATACATTTATGCTCCAAATTTCGGTGTTGTC 480
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      CAATCACTTGAATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGGCCAAGACC 540
consensus_4516#1      ---------GAATGGGAGGGATACTCATATTCGACAGATCAAGATATATGGNCCAAGACC 51
                               ****************************************** ********

consensus_4516#0      GAATCATGTTCCCCATCAGCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTAC 600
consensus_4516#1      GAATCATGTNCCCCATCANCCATTTCACTTCACTTCAAGGGAATTCGTCACCTACTCTAC 111
                      ********* ******** *****************************************

consensus_4516#0      TGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCTCCACATTGGAGCTTTTGTTG 660
consensus_4516#1      TGTTAGGTGACAGCTGACTAATTTAATTCCGTGGAACCCTCCACATTGGAGCTTTTGTTG 171
                      ************************************************************

consensus_4516#0      AAGATTTTGGATAGCTCAGCACACATGTGAACAGATTGTGTGGTCGATCCCATTCTCTGT 720
consensus_4516#1      AAGATTTTGGATAGCTCAGCACACATGTGAACAGATTGTGTGGTCGATCCCATTCTCTGT 231
                      ************************************************************

consensus_4516#0      GCTTCAGAATTCAGTCTCGCATGATGTGCACCCAGAAATCAACACTGGAAGAAGCATCTG 780
consensus_4516#1      GCTTCAGAATTCAGTCTCGCATGATGTGCACCCAGAAATCAACACTGGAAGAAGCATCTG 291
                      ************************************************************

consensus_4516#0      AAGCATCAAGTCTCTCATTGCCTTTCCGGAGAATTGCTGTATTTTTAATATGTAGAAAAT 840
consensus_4516#1      AAGCATCAAGTCTCTCATTGCCTTTCCGGAGAATTGCTGTATTTTTAATATGTAGAAAAT 351
                      ************************************************************

consensus_4516#0      TGATATTGGATTCATCTGTGTGTACGAGCTACATTTTCGTCCATGGAGTGTAACATTATC 900
consensus_4516#1      TGATATTGGATTCATCTGTGTGTACGAGCTACATTTTCGTCCATGGAGTGTAACATTATC 411
                      ************************************************************

consensus_4516#0      CTCCTCTCGTGTGCAAGAGAAGGTTATTTATTCATTGATATTGAGGATGGCTGATGCT 958
consensus_4516#1      CTCCTCTCGTGTGCAAGAGAAGGTTATTTATTCATTGAAAAAAAAAAAAA-------- 461
                      ************************************** *   *  *