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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4517 cluster # 4517       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4517#0 length = 556 sequences # 2  
consensus_4517#1 length = 311 sequences # 1  

consensusID : consensus_4517#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 556
fasta sequence
                              [GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGTATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAGGCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCAATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGGTCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCAGATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAGCACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTGGTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGGTTCAGNTTTCA]

[+] EMBL CA767182             [GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGTATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAGGCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCAATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGGTCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCAGATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAGCACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTGGTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGGTTCAGNTTTCA]
[+] EMBL CA764438             [GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGTATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAGGCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCAATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGGTCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCAGATGTATAAATTGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAGCACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCAT GTTTCTTGGTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATT               ]


>consensus_4517#0 GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGT ATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAG GCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCA ATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGG TCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCA GATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAG CACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAG CCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTG GTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGAT TATGGTTCAGNTTTCA



consensusID : consensus_4517#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence
                              [ATAGTACATGTAAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGCACTCGCACCCCATCATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAAANCAGAGTGGCAGCACCTAGTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGTTCCTTGTTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGTTCAGTTTTCACAT]

[+] EMBL D42759               [ATAGTACATGTAAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGCACTCGCACCCCATCATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAAANCAGAGTGGCAGCACCTAGTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGTTCCTTGTTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGTTCAGTTTTCACAT]


>consensus_4517#1 ATAGTACATGTAAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGCACTCGCACCCCAT CATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAAANCAGAGTGGCAGCACCTA GTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAGCCATCA GCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGTTCCTTGTTGCAAG AAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGATTATGTTC AGTTTTCACAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4517#0      GAAACACAATCTCCAATGTTTTCAGATACATTCAGTGAAGCTCGGCCTAATGGCTTCAGT 60
consensus_4517#1      ------------------------------------------------------------
                                                                                  

consensus_4517#0      ATTAGTACGATGAGGAAGGAAAAATCAAAACACAATTTCCAACCTCTGGAAAGTGTAGAG 120
consensus_4517#1      ------------------------------------------------------------
                                                                                  

consensus_4517#0      GCAGCAGCAGTAAAATTTAAAACCAATAGGCATGGTGACAATATCATGAACGAGAGAGCA 180
consensus_4517#1      ------------------------------------------------------------
                                                                                  

consensus_4517#0      ATTGATTTCGACATATCAAATTTGGGTGTAACCACCACCAAGAAAATGACAAAGAGAAGG 240
consensus_4517#1      --------------------------------------------------------ATAG 4
                                                                              *  *

consensus_4517#0      TCATTGTCAAAGCGTAAAAAGCCTGCTAATGGACTCGGAGGAGCCACTGACGTGCCACCA 300
consensus_4517#1      TACATGT-AAAGCTTGGTTTCCCGATGAATACATGTGTTTGTGC-ACTCGCACCCCATC- 61
                      *   *** ***** *      **    ***  *   *   * ** ***  *   *** * 

consensus_4517#0      GATGTATAAATCGTTCCGTTTATTGTCCTTCATGTATAGGGCTTTTTGGCAGAGTGGCAG 360
consensus_4517#1      -ATTTGAAAAACNAGNCATATAACAANTTTTGATTGAAAAA------ANCAGAGTGGCAG 114
                       ** *  *** *    * * **      **    *  *           ***********

consensus_4517#0      CACCTAGTTAATGTGCAACAAATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAG 420
consensus_4517#1      CACCTAGTTAATGTGCAACATATTGCTTGATGAGCGATTGTGTCAATATTGCACATGAAG 174
                      ******************** ***************************************

consensus_4517#0      CCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATGGTTTCTTG 480
consensus_4517#1      CCATCAGCTAAAGAGGATAAATCATCTCAACAATCTGAGCAATAATTTCATG-TTCCTTG 233
                      **************************************************** ** ****

consensus_4517#0      GTGCAAGAAAAACTTGGTAATGTATTGNCTGACTGGATCTCTTTTTTAGTCCAACTGGAT 540
consensus_4517#1      TTGCAAGAAAAACTTGGTAATGTATTGCCTGACTGGATCTCTTTTTTAGTCCAACTGGAT 293
                       ************************** ********************************

consensus_4517#0      TATGGTTCAGNTTTCA--- 556
consensus_4517#1      TATG-TTCAGTTTTCACAT 311
                      **** ***** *****   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)