cluster # 4522

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Oryza sativa
cluster # 4522 cluster # 4522 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4522#0 length = 1260 sequences # 1

consensus_4522#1 length = 520 sequences # 1
consensus_4522#2 length = 254 sequences # 1

consensusID : consensus_4522#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1260
fasta sequence

                              [TTAGCCGCGCGAGGCATTGCCCTCCTCCTGCGCGGCCGCCCCCCACGACCGCGGCGGAGGCTGCTCCGGCTGGGGCGGGATCGACGACGACTGATTCGGTTCATGATCCATCAGAAGGAATGAACGGGAGTCGGCAGATGGAGCTGCACTACATAAATACTGGATTTCCATACACCATCACCGAGAGCTTCATGGATTTCTTTGAGGGCCTCACATATGCTCATGCTGATTTTGCTATTGCAGATGCTTTCCATGATCAGGCTAATCCATACTGGGCAATGATGCATACAAACTCGTACAAGTATGGATATTCCGGTGCAGGAAATTATTACAGTTATGGGCATGTTTATGATATGAATGATTACATGCATAGGGCAGATGGTGGACGCAGAATCTGGGATAATGCTACACCTGTAAACAACACTGAATCCCCAAATGTAGTCTTGCAGGGTGGAGAAACTCCTCATGCAAATACAAGCTCTACTACTGAGGAATGTATCCAACAACAAGTACACCAGAATTCGAGCAGTCCACAGGTCATTTGGCAAGACAACATTGATCCTGACAATATGACATATGAGGAATTGTTGGATTTGGGTGAGGCAGTTGGAACCCAAAGCCGTGGTCTCTCCCAAGAACGCATTTCATTACTTCCAGTCACCAAGTACAAATGTGGTTTCTTTTCAAGGAAGAAAACACGCCGTGAAAGGTGTGTAATTTGCCAAATGGAGTACAGGAGAGGGAATCTGCAGATGACGCTTCCCTGCAAGCATGTGTACCATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCTGAGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCCCAGACTCAGCCCACACTGTACCCCAACGGATGCATGATTTCTGCTTGAAGGCAGCTTTCCCCTTTCTCTCTAGATTTGTGTATTAGAATCATATCGCAAATATAGGTTATAACCAGATGTAGTTGGATCTTGGAACCTGTTCTGAGAGGTTTGCCGTAGACTGTAGAGTTCGAATGTGAAGTGTAACCCTGTGCTAGATGAAGCATGCTGGATCACGCGCGCTTGCGAGGTGTTTTTGTCCACTGCAAAGAGCATTGCACTAGCCTGTGTTATTTGAATTCAATTAAGATTTTGTGGACAGAAAAAATTCATTTGTTACATCCCCTGCTTTTAGCCTGTCAATCACAGTATGTCCCCTGT]

[+] EMBL AK063978             [TTAGCCGCGCGAGGCATTGCCCTCCTCCTGCGCGGCCGCCCCCCACGACCGCGGCGGAGGCTGCTCCGGCTGGGGCGGGATCGACGACGACTGATTCGGTTCATGATCCATCAGAAGGAATGAACGGGAGTCGGCAGATGGAGCTGCACTACATAAATACTGGATTTCCATACACCATCACCGAGAGCTTCATGGATTTCTTTGAGGGCCTCACATATGCTCATGCTGATTTTGCTATTGCAGATGCTTTCCATGATCAGGCTAATCCATACTGGGCAATGATGCATACAAACTCGTACAAGTATGGATATTCCGGTGCAGGAAATTATTACAGTTATGGGCATGTTTATGATATGAATGATTACATGCATAGGGCAGATGGTGGACGCAGAATCTGGGATAATGCTACACCTGTAAACAACACTGAATCCCCAAATGTAGTCTTGCAGGGTGGAGAAACTCCTCATGCAAATACAAGCTCTACTACTGAGGAATGTATCCAACAACAAGTACACCAGAATTCGAGCAGTCCACAGGTCATTTGGCAAGACAACATTGATCCTGACAATATGACATATGAGGAATTGTTGGATTTGGGTGAGGCAGTTGGAACCCAAAGCCGTGGTCTCTCCCAAGAACGCATTTCATTACTTCCAGTCACCAAGTACAAATGTGGTTTCTTTTCAAGGAAGAAAACACGCCGTGAAAGGTGTGTAATTTGCCAAATGGAGTACAGGAGAGGGAATCTGCAGATGACGCTTCCCTGCAAGCATGTGTACCATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCTGAGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCCCAGACTCAGCCCACACTGTACCCCAACGGATGCATGATTTCTGCTTGAAGGCAGCTTTCCCCTTTCTCTCTAGATTTGTGTATTAGAATCATATCGCAAATATAGGTTATAACCAGATGTAGTTGGATCTTGGAACCTGTTCTGAGAGGTTTGCCGTAGACTGTAGAGTTCGAATGTGAAGTGTAACCCTGTGCTAGATGAAGCATGCTGGATCACGCGCGCTTGCGAGGTGTTTTTGTCCACTGCAAAGAGCATTGCACTAGCCTGTGTTATTTGAATTCAATTAAGATTTTGTGGACAGAAAAAATTCATTTGTTACATCCCCTGCTTTTAGCCTGTCAATCACAGTATGTCCCCTGT]




>consensus_4522#0
TTAGCCGCGCGAGGCATTGCCCTCCTCCTGCGCGGCCGCCCCCCACGACCGCGGCGGAGG
CTGCTCCGGCTGGGGCGGGATCGACGACGACTGATTCGGTTCATGATCCATCAGAAGGAA
TGAACGGGAGTCGGCAGATGGAGCTGCACTACATAAATACTGGATTTCCATACACCATCA
CCGAGAGCTTCATGGATTTCTTTGAGGGCCTCACATATGCTCATGCTGATTTTGCTATTG
CAGATGCTTTCCATGATCAGGCTAATCCATACTGGGCAATGATGCATACAAACTCGTACA
AGTATGGATATTCCGGTGCAGGAAATTATTACAGTTATGGGCATGTTTATGATATGAATG
ATTACATGCATAGGGCAGATGGTGGACGCAGAATCTGGGATAATGCTACACCTGTAAACA
ACACTGAATCCCCAAATGTAGTCTTGCAGGGTGGAGAAACTCCTCATGCAAATACAAGCT
CTACTACTGAGGAATGTATCCAACAACAAGTACACCAGAATTCGAGCAGTCCACAGGTCA
TTTGGCAAGACAACATTGATCCTGACAATATGACATATGAGGAATTGTTGGATTTGGGTG
AGGCAGTTGGAACCCAAAGCCGTGGTCTCTCCCAAGAACGCATTTCATTACTTCCAGTCA
CCAAGTACAAATGTGGTTTCTTTTCAAGGAAGAAAACACGCCGTGAAAGGTGTGTAATTT
GCCAAATGGAGTACAGGAGAGGGAATCTGCAGATGACGCTTCCCTGCAAGCATGTGTACC
ATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCTG
AGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCC
CAGACTCAGCCCACACTGTACCCCAACGGATGCATGATTTCTGCTTGAAGGCAGCTTTCC
CCTTTCTCTCTAGATTTGTGTATTAGAATCATATCGCAAATATAGGTTATAACCAGATGT
AGTTGGATCTTGGAACCTGTTCTGAGAGGTTTGCCGTAGACTGTAGAGTTCGAATGTGAA
GTGTAACCCTGTGCTAGATGAAGCATGCTGGATCACGCGCGCTTGCGAGGTGTTTTTGTC
CACTGCAAAGAGCATTGCACTAGCCTGTGTTATTTGAATTCAATTAAGATTTTGTGGACA
GAAAAAATTCATTTGTTACATCCCCTGCTTTTAGCCTGTCAATCACAGTATGTCCCCTGT

consensusID : consensus_4522#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [GACGCTTCCCTGCAAGCATGTGTACCATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCTGAGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCCCAGACTCAGCCCACACTGTACCCCAACGGATGCATGATTTCTGCTTGAAGGCAGCTTTCCCCTTTCTCTCTAGATTTGTGTATTAGAATCATATCGCAAATATAGGTTATAACCAGATGTAGTTGGATCTTGGAACCTGTTCTGAGAGGTTTGCCGTAGACTGTAGAGTTCGAATGTGAAGTGTAACCCTGTGCTAGATGAAGCATGCTGGATCACGCGCGCTTGCGAGGTGTTTTTGTCCACTGCAAAGAGCATTGCACTAGCCTGTGTTATTTGAATTCAATTAAGATTTTGTGGACAGAAAAAATTCATTTGTTACATCCCCTGCTTTTAGCCTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C97861               [GACGCTTCCCTGCAAGCATGTGTACCATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCTGAGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCCCAGACTCAGCCCACACTGTACCCCAACGGATGCATGATTTCTGCTTGAAGGCAGCTTTCCCCTTTCTCTCTAGATTTGTGTATTAGAATCATATCGCAAATATAGGTTATAACCAGATGTAGTTGGATCTTGGAACCTGTTCTGAGAGGTTTGCCGTAGACTGTAGAGTTCGAATGTGAAGTGTAACCCTGTGCTAGATGAAGCATGCTGGATCACGCGCGCTTGCGAGGTGTTTTTGTCCACTGCAAAGAGCATTGCACTAGCCTGTGTTATTTGAATTCAATTAAGATTTTGTGGACAGAAAAAATTCATTTGTTACATCCCCTGCTTTTAGCCTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4522#1
GACGCTTCCCTGCAAGCATGTGTACCATGCCAGCTGTGTAACAAGATGGCTTAGCATAAA
CAAGGTTTGCCCTGTTTGCTTTGCTGAGGTTCCTGGTGACGAACCCAAGAGGCAATGAGT
CAAGGCCGCCAAAATGTTCTTGCGCCCAGACTCAGCCCACACTGTACCCCAACGGATGCA
TGATTTCTGCTTGAAGGCAGCTTTCCCCTTTCTCTCTAGATTTGTGTATTAGAATCATAT
CGCAAATATAGGTTATAACCAGATGTAGTTGGATCTTGGAACCTGTTCTGAGAGGTTTGC
CGTAGACTGTAGAGTTCGAATGTGAAGTGTAACCCTGTGCTAGATGAAGCATGCTGGATC
ACGCGCGCTTGCGAGGTGTTTTTGTCCACTGCAAAGAGCATTGCACTAGCCTGTGTTATT
TGAATTCAATTAAGATTTTGTGGACAGAAAAAATTCATTTGTTACATCCCCTGCTTTTAG
CCTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_4522#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [TGACGCTTCCCTGCAAGCATGTGTACCATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCTGAGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCCCAGACTCAGCCCACACTGTTACCCCCAAACGGATTGCATGGATTTTCTNGCTTTGAAGGGCAAGCTTTTCCCCCTTTTCTTTCTTCTAGGATTTTGTTGGTAATTAG]

[+] EMBL OS0025A              [TGACGCTTCCCTGCAAGCATGTGTACCATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCTGAGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCCCAGACTCAGCCCACACTGTTACCCCCAAACGGATTGCATGGATTTTCTNGCTTTGAAGGGCAAGCTTTTCCCCCTTTTCTTTCTTCTAGGATTTTGTTGGTAATTAG]




>consensus_4522#2
TGACGCTTCCCTGCAAGCATGTGTACCATGCCAGCTGTGTAACAAGATGGCTTAGCATAA
ACAAGGTTTGCCCTGTTTGCTTTGCTGAGGTTCCTGGTGACGAACCCAAGAGGCAATGAG
TCAAGGCCGCCAAAATGTTCTTGCGCCCAGACTCAGCCCACACTGTTACCCCCAAACGGA
TTGCATGGATTTTCTNGCTTTGAAGGGCAAGCTTTTCCCCCTTTTCTTTCTTCTAGGATT
TTGTTGGTAATTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4522#0      TTAGCCGCGCGAGGCATTGCCCTCCTCCTGCGCGGCCGCCCCCCACGACCGCGGCGGAGG 60
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      CTGCTCCGGCTGGGGCGGGATCGACGACGACTGATTCGGTTCATGATCCATCAGAAGGAA 120
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      TGAACGGGAGTCGGCAGATGGAGCTGCACTACATAAATACTGGATTTCCATACACCATCA 180
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      CCGAGAGCTTCATGGATTTCTTTGAGGGCCTCACATATGCTCATGCTGATTTTGCTATTG 240
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      CAGATGCTTTCCATGATCAGGCTAATCCATACTGGGCAATGATGCATACAAACTCGTACA 300
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      AGTATGGATATTCCGGTGCAGGAAATTATTACAGTTATGGGCATGTTTATGATATGAATG 360
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      ATTACATGCATAGGGCAGATGGTGGACGCAGAATCTGGGATAATGCTACACCTGTAAACA 420
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      ACACTGAATCCCCAAATGTAGTCTTGCAGGGTGGAGAAACTCCTCATGCAAATACAAGCT 480
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      CTACTACTGAGGAATGTATCCAACAACAAGTACACCAGAATTCGAGCAGTCCACAGGTCA 540
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      TTTGGCAAGACAACATTGATCCTGACAATATGACATATGAGGAATTGTTGGATTTGGGTG 600
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      AGGCAGTTGGAACCCAAAGCCGTGGTCTCTCCCAAGAACGCATTTCATTACTTCCAGTCA 660
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      CCAAGTACAAATGTGGTTTCTTTTCAAGGAAGAAAACACGCCGTGAAAGGTGTGTAATTT 720
consensus_4522#1      ------------------------------------------------------------
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      GCCAAATGGAGTACAGGAGAGGGAATCTGCAGATGACGCTTCCCTGCAAGCATGTGTACC 780
consensus_4522#1      ----------------------------------GACGCTTCCCTGCAAGCATGTGTACC 26
consensus_4522#2      ---------------------------------TGACGCTTCCCTGCAAGCATGTGTACC 27
                                                        **************************

consensus_4522#0      ATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCTG 840
consensus_4522#1      ATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCTG 86
consensus_4522#2      ATGCCAGCTGTGTAACAAGATGGCTTAGCATAAACAAGGTTTGCCCTGTTTGCTTTGCTG 87
                      ************************************************************

consensus_4522#0      AGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCC 900
consensus_4522#1      AGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCC 146
consensus_4522#2      AGGTTCCTGGTGACGAACCCAAGAGGCAATGAGTCAAGGCCGCCAAAATGTTCTTGCGCC 147
                      ************************************************************

consensus_4522#0      CAGACTCAGCCCACACTGT-ACCCC--AACGGAT-GCATGA--TTTCTGCTTGAAGGCAG 954
consensus_4522#1      CAGACTCAGCCCACACTGT-ACCCC--AACGGAT-GCATGA--TTTCTGCTTGAAGGCAG 200
consensus_4522#2      CAGACTCAGCCCACACTGTTACCCCCAAACGGATTGCATGGATTTTCTNGCTTTGAAGGG 207
                      ******************* *****  ******* *****   *****   *       *

consensus_4522#0      CTTTCCCCTTTCTCTCTAGATTTGTGTATTAGAATCATATCGCAAATATAGGTTATAACC 1014
consensus_4522#1      CTTTCCCCTTTCTCTCTAGATTTGTGTATTAGAATCATATCGCAAATATAGGTTATAACC 260
consensus_4522#2      CAAGCTTTTCCCCCTTT---TCTTTCTTCTAGGATTTTGTTGGTAAT-TAG--------- 254
                      *   *   *  * ** *   * * * *  *** **  * * *  *** ***         

consensus_4522#0      AGATGTAGTTGGATCTTGGAACCTGTTCTGAGAGGTTTGCCGTAGACTGTAGAGTTCGAA 1074
consensus_4522#1      AGATGTAGTTGGATCTTGGAACCTGTTCTGAGAGGTTTGCCGTAGACTGTAGAGTTCGAA 320
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      TGTGAAGTGTAACCCTGTGCTAGATGAAGCATGCTGGATCACGCGCGCTTGCGAGGTGTT 1134
consensus_4522#1      TGTGAAGTGTAACCCTGTGCTAGATGAAGCATGCTGGATCACGCGCGCTTGCGAGGTGTT 380
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      TTTGTCCACTGCAAAGAGCATTGCACTAGCCTGTGTTATTTGAATTCAATTAAGATTTTG 1194
consensus_4522#1      TTTGTCCACTGCAAAGAGCATTGCACTAGCCTGTGTTATTTGAATTCAATTAAGATTTTG 440
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      TGGACAGAAAAAATTCATTTGTTACATCCCCTGCTTTTAGCCTGTCAATCACAGTATGTC 1254
consensus_4522#1      TGGACAGAAAAAATTCATTTGTTACATCCCCTGCTTTTAGCCTGTCAAAAAAAAAAAAAA 500
consensus_4522#2      ------------------------------------------------------------
                                                                                  

consensus_4522#0      CCCTGT-------------- 1260
consensus_4522#1      AAAAAAAAAAAAAAAAAAAA 520
consensus_4522#2      --------------------