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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1950 fasta sequence
[GTCGTGGGATGGCGGTGCGGCGGTCGGTGGTAGGGCGAAGGGGTTCGGGGTGGTGCGGTGCTGCGTGCAGGAGAAGAAGCCGCGGGTGAGGAAGACCAAGGAGGAGAGGCGGGAGATGGTCGAGTCCTTCGTCAACACTTACCGGGTTTCAAATGATGGGAAATTCCCTTCAGTCAATCTCACGCATAAGGAAGTCGGAGGGTCATATTACATAGTTCGTGAAATCGTGAGAGATATCATCCAAGAGAACAGGGTTCTGGGCCCTGGCGGCTTGAATGCCACGGCACTGAGTTTTGAAGACTGCCCTGATTCTGTGGAGTCACCTGTTACGCATGAACTGGGCCAAGACAGTGTCGAGATATTAGATATGTCTGATGACAACCAAGCTGGCATGGATACTGTGACAGACATGAGCACCCAGCAACTACTGGGGTCATCTAATCTATTGGATGCTGGTATTCTGAATGGTGCACTCCGAAATGGGAACATAGCAGATATGGCATGCTTAGAGACAAACAGCGAGAAACAAGATGAAGTTCCATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTCTCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGACAACCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGAGTCGCTTTTACAAGATCATGATGACACAACTGATAATGCTGTTGATGAAGCTGTTCTTTGCTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACGACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAGTCCAATTCTAGAGTGGATACTTTCAACTCAAATACAAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGTACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACTGGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAGTGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACATGGAGACAGCACCACAACTGCCATCAGCAGTGCATGTGTTACTACTTAATGATGTTAGCAACAGGCAACTGAGTGCATTATGGAAGTATTACTCAAGATACGTTTCTGTTGTCTAGTTGCCTATTTATTGATATTCTATTTGCTATATAATATTTATTGATCATATAACAATTTGTTACATAAACCGGTTCTTGTACCTTGTCGATCATGTCCTATTTTTCTGTTTGGTTATGAAAATTTTATTTCTCATGCGAATGTGGTTAACTATGCGAGATGTTAACAATTTAATAGTGATTCAATAAAGGACAGATCACACACTATAATGTTTTTAACATTGTTATTCTTTATGGTCCGCAGGAAAACTGGGAAGGTGCAGCCGAAGAAAGAGACCAACCTGTTTTGGCTAATCATTAGGGCATTTGTTGTTT-CCATGT-CCAAGATGTGGGCAAAATGAGAGGATGTG-CAAAAGACACTTTCATCTGGCACTG-CAG-CCTGGGATG-CCCTCTGCCTACTGG-CAAATGTGAAGCTCCATTTTGACGCGATGCATATACATATTTGTTTTCTGTGCCGCACGTTAGGTTGGTTGGTAGGCTTCAGGAGTTTATTTAGGTTCTAGCTTGTAGGAGTAGCATTTGGTGAACTTTCTCAGCCTTTTCAACTCTAAAATCTATTAGCTGTAATTGCACTATTTTTGTAGAAGGGGTGAGGTATGTGCTTCTCTTATATATGAAAGTATGAAACAGTAGTATCCACAGATTCTCCTCTGAATGAGGATTA-CCGGCCTGGTGGCCTTGCGTTCTGGTGAAAAAA]
[+] EMBL AK069942 [GTCGTGGGATGGCGGTGCGGCGGTCGGTGGTAGGGCGAAGGGGTTCGGGGTGGTGCGGTGCTGCGTGCAGGAGAAGAAGCCGCGGGTGAGGAAGACCAAGGAGGAGAGGCGGGAGATGGTCGAGTCCTTCGTCAACACTTACCGGGTTTCAAATGATGGGAAATTCCCTTCAGTCAATCTCACGCATAAGGAAGTCGGAGGGTCATATTACATAGTTCGTGAAATCGTGAGAGATATCATCCAAGAGAACAGGGTTCTGGGCCCTGGCGGCTTGAATGCCACGGCACTGAGTTTTGAAGACTGCCCTGATTCTGTGGAGTCACCTGTTACGCATGAACTGGGCCAAGACAGTGTCGAGATATTAGATATGTCTGATGACAACCAAGCTGGCATGGATACTGTGACAGACATGAGCACCCAGCAACTACTGGGGTCATCTAATCTATTGGATGCTGGTATTCTGAATGGTGCACTCCGAAATGGGAACATAGCAGATATGGCATGCTTAGAGACAAACAGCGAGAAACAAGATGAAGTTCCATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTCTCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGACAACCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGAGTCGCTTTTACAAGATCATGATGACACAACTGATAATGCTGTTGATGAAGCTGTTCTTTGCTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACGACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAGTCCAATTCTAGAGTGGATACTTTCAACTCAAATACAAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGTACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACTGGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAGTGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACATGGAGACAGCACCACAACTGCCATCAGCAGTGCATGTGTTACTACTTAATGATGTTAGCAACAGGCAACTGAGTGCATTATGGAAGTATTACTCAAGATACGTTTCTGTTGTCTAGTTGCCTATTTATTGATATTCTATTTGCTATATAATATTTATTGATCATATAACAATTTGTTACATAAACCGGTTCTTGTACCTTGTCGATCATGTCCTATTTTTCTGTTTGGTTATGAAAATTTTATTTCTCATGCGAATGTGGTTAACTATGCGAGATGTTAACAATTTAATAGTGATTCAATAAAGGACAGATCACACACTATAATGTTTTTAACATTGTTATTCTTTATGGTCCGCAGGAAAACTGGGAAGGTGCAGCCGAAGAAAGAGACCAACCTGTTTTGGCTAATCATTAGGGCATTTGTTGTTT CCATGT CCAAGATGTGGGCAAAATGAGAGGATGTG CAAAAGACACTTTCATCTGGCACTG CAG CCTGGGATG CCCTCTGCCTACTGG CAAATGTGAAGCTCCATTTTGACGCGATGCATATACATATTTGTTTTCTGTGCCGCACGTTAGGTTGGTTGGTAGGCTTCAGGAGTTTATTTAGGTTCTAGCTTGTAGGAGTAGCATTTGGTGAACTTTCTCAGCCTTTTCAACTCTAAAATCTATTAGCTGTAATTGCACTATTTTTGTAGAAGGGGTGAGGTATGTGCTTCTCTTATATATGAAAGTATGAAACAGTAGTATCCACAGATTCTCCTCTGAATGAGGATTA CCGGCCTGGT ]
[+] EMBL AU058038 [ AGCCGAAGAAAGAGACCAACCTGTTTTGGCTAATCATTAGGGCATTTGTTGTTTCCCATGTCCCAAGATGTGGGCAAAATGAGAGGATGTGCCAAAAGACACTTTCATCTGGCACTGNCAGCCCTGGGATGCCCCTCTGCCTACTGGCCAAATGTGAAGCTCCATTTTGACGCGATGCATATACATATTTGTTTTCTGTGCCGCACGTTAGGTTGGTTGGTAGGCTTCAGGAGTTTATTTAGGTTCTAGCTTGTAGGAGTAGCATTTGGTGAACTTTCTCAGCCTTTTCAACTCTAAAATCTATTAGCTGTAATTGCACTATTTTTGTAGAAGGGGTGAGGTATGTGCTTCTCTTATATATGAAAGTATGAAACAGTAGTATCCACAGATTCTCCTCTGAATGAGGATTATCCGGCCTGGTGGCCTTGCGTTCTGGTGAAAAAA]
consensusID : consensus_4524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence
[GGGGCAAACAGTGAGGAACAAGATGAAGTTCCATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTCTCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGACAATCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGAGTCGCTTTTACAAGATCATGATGACACAGCTGATAATGCTGTTGATGAAGCTGTTCTTTGCTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACGACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAATCCAATTCTAGAGTGGATACTTTCAACTCAAATACGAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGTACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACTGGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAGTGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACATGGAGACAGCACCACAACTGCCATCAGCAGGAAAACTGGGGAAGGTGCAGCCGAAGAAAGAGACCAACCCTGNTTTGGCTAATCATTANGGCATTTGGNTGGTTTCATGTCCAAGATGTGGGGCAAATGAGNAGGATGTGCAAAAGACACTTTTCATCTGGCACTGCAGCCTGGGATGCCCTCTGNCTACTGGGCAAATG]
[+] EMBL CA765073 [GGGGCAAACAGTGAGGAACAAGATGAAGTTCCATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTCTCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGACAATCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGAGTCGCTTTTACAAGATCATGATGACACAGCTGATAATGCTGTTGATGAAGCTGTTCTTTGCTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACGACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAATCCAATTCTAGAGTGGATACTTTCAACTCAAATACGAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGTACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACTGGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAGTGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACATGGAGACAGCACCACAACTGCCATCAGCAGGAAAACTGGGGAAGGTGCAGCCGAAGAAAGAGACCAACCCTGNTTTGGCTAATCATTANGGCATTTGGNTGGTTTCATGTCCAAGATGTGGGGCAAATGAGNAGGATGTGCAAAAGACACTTTTCATCTGGCACTGCAGCCTGGGATGCCCTCTGNCTACTGGGCAAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4524#0 GTCGTGGGATGGCGGTGCGGCGGTCGGTGGTAGGGCGAAGGGGTTCGGGGTGGTGCGGTG 60
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 CTGCGTGCAGGAGAAGAAGCCGCGGGTGAGGAAGACCAAGGAGGAGAGGCGGGAGATGGT 120
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 CGAGTCCTTCGTCAACACTTACCGGGTTTCAAATGATGGGAAATTCCCTTCAGTCAATCT 180
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 CACGCATAAGGAAGTCGGAGGGTCATATTACATAGTTCGTGAAATCGTGAGAGATATCAT 240
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 CCAAGAGAACAGGGTTCTGGGCCCTGGCGGCTTGAATGCCACGGCACTGAGTTTTGAAGA 300
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 CTGCCCTGATTCTGTGGAGTCACCTGTTACGCATGAACTGGGCCAAGACAGTGTCGAGAT 360
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 ATTAGATATGTCTGATGACAACCAAGCTGGCATGGATACTGTGACAGACATGAGCACCCA 420
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 GCAACTACTGGGGTCATCTAATCTATTGGATGCTGGTATTCTGAATGGTGCACTCCGAAA 480
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 TGGGAACATAGCAGATATGGCATGCTTAGAGACAAACAGCGAGAAACAAGATGAAGTTCC 540
consensus_4524#1 ----------------------------GGGGCAAACAGTGAGGAACAAGATGAAGTTCC 32
* * ******* *** ****************
consensus_4524#0 ATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTC 600
consensus_4524#1 ATGTGCGCAATCAGCAGAAATTGACCCCAGTAGTTCTGAAAAGCTACCTCCTTCCTTCTC 92
************************************************************
consensus_4524#0 TCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGAC 660
consensus_4524#1 TCATGCCCCTGATTCAGAAAGTGAATTTGAGATGGACAGTCGGGTGGTTGCTCATGAGAC 152
************************************************************
consensus_4524#0 AACCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGA 720
consensus_4524#1 AATCAGCAGTCTCACTAATGGAGTTATTTCCTCAGGACCCAGTGCTGTTATTACAAATGA 212
** *********************************************************
consensus_4524#0 GTCGCTTTTACAAGATCATGATGACACAACTGATAATGCTGTTGATGAAGCTGTTCTTTG 780
consensus_4524#1 GTCGCTTTTACAAGATCATGATGACACAGCTGATAATGCTGTTGATGAAGCTGTTCTTTG 272
**************************** *******************************
consensus_4524#0 CTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACG 840
consensus_4524#1 CTTACAGACTAATGGAAGTTCTCAAGCAAATGAGACCATTTTGCAGGAACATGAGACACG 332
************************************************************
consensus_4524#0 ACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAGTCCAATTCTAGAGT 900
consensus_4524#1 ACCTGAAAGTGTCATGAGCAATGATGTTCAAACCATTGACAGTCAATCCAATTCTAGAGT 392
********************************************* **************
consensus_4524#0 GGATACTTTCAACTCAAATACAAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGT 960
consensus_4524#1 GGATACTTTCAACTCAAATACGAGTGAAGACACAACCAAGTCTATTGAAGTGTCTGAAGT 452
********************* **************************************
consensus_4524#0 ACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACT 1020
consensus_4524#1 ACAGAGGTTGCATCCTGATGAGGAAGAAAAGGCAGAAAATCTTGTTTCTCATGCAGAACT 512
************************************************************
consensus_4524#0 GGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAG 1080
consensus_4524#1 GGATACAAAGGTGTTCTCACACGTTGAAGGCAAGAATGGCATGGTGGAGGAAGATAACAG 572
************************************************************
consensus_4524#0 TGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACA 1140
consensus_4524#1 TGAACTCAAGCAATCTATATCTATCATAACAATGGAAGAGCATGATAGCAAGCCTGAACA 632
************************************************************
consensus_4524#0 TGGAGACAGCACCACAACTGCCATCAGCAGTGCATGTGTTACTACTTAATG-ATGTTAGC 1199
consensus_4524#1 TGGAGACAGCACCACAACTGCCATCAGCAGGAAA------ACTGGGGAAGGTGCAGCCGA 686
****************************** * *** ** * *
consensus_4524#0 AACAGGCAACTGAGTGCATTATGGAAGTATTACTCAAGATACGTTTCTGTTGTCTAGTTG 1259
consensus_4524#1 AGAAAGAGACCAACCCTGNTTTGG--CTAATCATTANGGCATTTGGNTGGTTTCATGTCC 744
* * * ** * * *** ** * * * * * * ** * ** **
consensus_4524#0 CCTATTTATTGATATTCTATTTGCTATATAATATTTATTGATCATATAACAATTTGTTAC 1319
consensus_4524#1 AAGATGTGGGGCAAATGAGNAGGATGTGCAAAAGACACTTTTCATCTGGCA--CTGCAGC 802
** * * * * * * * ** * * * **** * ** ** *
consensus_4524#0 ATAAACCGGTTCTTGTACCTTGTCGATCATGTCCTATTTTTCTGTTTGGTTATGAAAATT 1379
consensus_4524#1 CTGGGATGCCCTCTGN---CTACTGGGCAAATG--------------------------- 832
* * ** * * ** *
consensus_4524#0 TTATTTCTCATGCGAATGTGGTTAACTATGCGAGATGTTAACAATTTAATAGTGATTCAA 1439
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 TAAAGGACAGATCACACACTATAATGTTTTTAACATTGTTATTCTTTATGGTCCGCAGGA 1499
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 AAACTGGGAAGGTGCAGCCGAAGAAAGAGACCAACCTGTTTTGGCTAATCATTAGGGCAT 1559
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 TTGTTGTTTCCATGTCCAAGATGTGGGCAAAATGAGAGGATGTGCAAAAGACACTTTCAT 1619
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 CTGGCACTGCAGCCTGGGATGCCCTCTGCCTACTGGCAAATGTGAAGCTCCATTTTGACG 1679
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 CGATGCATATACATATTTGTTTTCTGTGCCGCACGTTAGGTTGGTTGGTAGGCTTCAGGA 1739
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 GTTTATTTAGGTTCTAGCTTGTAGGAGTAGCATTTGGTGAACTTTCTCAGCCTTTTCAAC 1799
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 TCTAAAATCTATTAGCTGTAATTGCACTATTTTTGTAGAAGGGGTGAGGTATGTGCTTCT 1859
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 CTTATATATGAAAGTATGAAACAGTAGTATCCACAGATTCTCCTCTGAATGAGGATTACC 1919
consensus_4524#1 ------------------------------------------------------------
consensus_4524#0 GGCCTGGTGGCCTTGCGTTCTGGTGAAAAAA 1950
consensus_4524#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||