These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1139 fasta sequence [CAGGTGGCAGCTTGATTATTTAACTAAGCTGAAGTGGCCTCAAATTGAACACGAGAATGCACCATGGGCATCACGTACCCCATTGTGTAGTCTGCATAGCTGGTCATTTACTGGGATATTTCCTGAGCCAGCACCTCGTTCTCCTTTGATGGTTGTTGGGGCTGCAGGAAGTGTTGACAGTGATATGGAGCGAAGATCTGTGACGCATTGGGAAGAAACTGAGAGTACCAGGGAGGATGGGGAGCTTCTGGCCGTGGTTCCTGCTGAAAACACGCCAAGTGTTTCTAAAATATCACACTCTGAAGTGTCACCGGNGTTCCGAAACCATTCTAGAGGCTTATCCCTGATATCAAAGAGCGCCACACCATCTAAACTAAGCATCTCACACAGTTTTTGGTGGAAATGAGG-CGNTCTTGATCCTCTTGATGTATAGTGACAGTGAGTTAGAGGAACAGACATTTGTTGACCAAGAAGTGGAAAAAGTCAACCTTGCTACAGACAAATCCTGGGAGGACTATGCTTCCAGGGAGTTTACCCTGGTCTTGAGTAAAACTCTGAAGAATGGTCCAAAAGTAATGCTGGAAGCCAAGATTGCGATCAGCATGGAATATCCTGTTAGGCCACCTTTTTTCACATTGCAATTGCTTTCGGGAAAGACTGAAGCTTTAAAATGGCACAATGATCTTAGAGCAATGGAAGCTGAGGTGAATCTTCACATCCTTCAGGTTGTACCTTCGTCATATGAGGACTACATACTTACTCACCAAATTCTGTGCCTGGCTATGTTATTTGATATGCATTTTGATGAGGATCATGGTAAAAGAAAGGTTACTTCAGTGATTGATGTGGGTCTATGTAAACCAGTTAGTGGAACCATGCTTACCAGATCAGTCAGGGGAAGAGACCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGGTCTTCTAGNTGGTTATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTTGAGGAAATTGGATGCTGTCAGTGACAGTCTTTCATTTCNTTCCCGNCNGGGAAAAAGGTGNCTACATGGATTCATGGGTATTCCTACTGGCTTGACATANATTATGAGCTTTTTTCNTTTTNTTTGGTTGCT] [+] EMBL C97481 [CAGGTGGCAGCTTGATTATTTAACTAAGCTGAAGTGGCCTCAAATTGAACACGAGAATGCACCATGGGCATCACGTACCCCATTGTGTAGTCTGCATAGCTGGTCATTTACTGGGATATTTCCTGAGCCAGCACCTCGTTCTCCTTTGATGGTTGTTGGGGCTGCAGGAAGTGTTGACAGTGATATGGAGCGAAGATCTGTGACGCATTGGGAAGAAACTGAGAGTACCAGGGAGGATGGGGAGCTTCTGGCCGTGGTTCCTGCTGAAAACACGCCAAGTGTTTCTAAAATATCACACTCTGAAGTGTCACCGGNGTTCCGAAACCATTCTAGAGGCTTATCCCTGATATCAAAGAGCGCCACACCATCTAAACTAAGCATCTCACACAGTTTTTGGTGGAAATGAGG CGNTCTTGATCCTCTTGA ] [+] EMBL CA767328 [ TGAAAACACGCCAAGTGTTTCTAAAATATCACACTCTGAAGTGTCACCGGAGGTTCGAAACCATTCTAGAGGCTTATCCCTGATATCAAAGAGCGCCACACCATCTAAACTAAGCATCTCACACAG TTTTGGTAGAAATGAGGACGATCTTGAT CTCTTGATGTATAGTGACAGTGAGTTAGAGGAACAGACATTTGTTGACCAAGAAGTGGAAAAAGTCAACCTTGCTACAGACAAATCCTGGGAGGACTATGCTTCCAGGGAGTTTACCCTGGTCTTGAGTAAAACTCTGAAGAATGGTCCAAAAGTAATGCTGGAAGCCAAGATTGCGATCAGCATGGAATATCCTGTTAGGCCACCTTTTTTCACATTGCAATTGCTTTCGGGAAAGACTGAAGCTTTAAAATGGCACAATGATCTTAGAGCAATGGAAGCTGAGGTGAATCTTCACATCCTTCAGGTTGTACCTTCGTCATATGAGGACTACATACTTACTCACCAAATTCTGTGCCTGGCTATGTTATTTGATATGCATTTTGATGAGGATCATGGTAAAAGAAAGGTTACTTCAGTGATTGATGTGGGTCTATGTAAACCAGTTAGTGGAACCATGCTTACCAGATCAGTCAGGGGAAGAGACCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGGTCTTCTAGNTGGTTATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTTGAGGAAATTGGATGCTGTCAGTGACAGTCTTTCATTTCNTTCCCGNCNGGGAAAAAGGTGNCTACATGGATTCATGGGTATTCCTACTGGCTTGACATANATTATGAGCTTTTTTCNTTTTNTTTGGTTGCT] consensusID : consensus_4528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 745 fasta sequence [TGGGGNATCTTGGTAAAAGAAAGGTTACTTCCAGTGATTGATGTGGGCCTATGTAACCCAGTTAGTGGAACCATGCTTACCAGATCAGTCCAGGGNAAGAGNCCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGTTCTTCTAGTTGTTTATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTTGAGGAAATTGGATGCTGACAGTGACAGTCTTTCATTCCTTCCCGCCACGGAGAAAGTTGCCTAACATGGATTCATGGTTATTCCTACTGGCTTGACATAGATGATGAGCTTTTTCCTTTTCTTTTGTTTGCTGGAGAGAATNTTCGCTGTTGTGATACTGATGAGATTATCTAACTACCCTGACTGTAGCCAATGGAGTGTTGTCGGGCTTGTGTATGAGGATTTTTTTTTTTTTGGGTGGGGGTGGGTAAGAGCCAATGCAAGATATCCACTTTTTTCACGGTCATCATCAGAAGATATGTAACCGTACAACATTCTAAAACTCTTGTTGCATCCTGTATTCTTCCAGCACGTTTTGGGAAGCCTTCAGCATTAAGCAAAAGAACAGCTTGCACCAAGTATAGCTTGCGTGCCAAGGGTGATCAGACTTGTATGTGACTTGAGTCATCTGATGTTTCATCACTTGGGTGACATCTGTGAGGTAATGCATTGCTCGTCCTGAGTCCTGACCCAAAAAAAAAAAAAAAAAAACAAAAAAAA] [+] EMBL C97480 [TGGGGNATCTTGGTAAAAGAAAGGTTACTTCCAGTGATTGATGTGGGCCTATGTAACCCAGTTAGTGGAACCATGCTTACCAGATCAGTCCAGGGNAAGAGNCCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGTTCTTCTAGTTGTTTATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTTGAGGAAATTGGATGCTGACAGTGACAGTCTTTCATTCCTTCCCGCCACGGAGAAAGTTGCCTAACATGGATTCATGGTTATTCCTACTGGCTTGACATAGATGATGAGCTTTTTCCTTTTCTTTTGTTTGCTGGAGAGAATNTTCGCTGTTGTGATACTGATGAGATTATCTAACTACCCTGACTGTAGCCAATGGAGTGTTGTCGGGCTTGTGTATGAGGATTTTTTTTTTTTTGGGTGGGGGTGGGTAAGAGCCAATGCAAGATATCCACTTTTTTCACGGTCATCATCAGAAGATATGTAACCGTACAACATTCTAAAACTCTTGTTGCATCCTGTATTCTTCCAGCACGTTTTGGGAAGCCTTCAGCATTAAGCAAAAGAACAGCTTGCACCAAGTATAGCTTGCGTGCCAAGGGTGATCAGACTTGTATGTGACTTGAGTCATCTGATGTTTCATCACTTGGGTGACATCTGTGAGGTAATGCATTGCTCGTCCTGAGTCCTGACCCAAAAAAAAAAAAAAAAAAACAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4528#0 CAGGTGGCAGCTTGATTATTTAACTAAGCTGAAGTGGCCTCAAATTGAACACGAGAATGC 60 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 ACCATGGGCATCACGTACCCCATTGTGTAGTCTGCATAGCTGGTCATTTACTGGGATATT 120 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 TCCTGAGCCAGCACCTCGTTCTCCTTTGATGGTTGTTGGGGCTGCAGGAAGTGTTGACAG 180 consensus_4528#1 --------------------------TGGGGNATCTTGGTAAAAGAAAGGTTACTTCCAG 34 ** * * **** * * * *** consensus_4528#0 TGATATGGAGCGAAGATCTGTGACGCATTGGGAAGAA----ACTGAGAGTACCAGGGAGG 236 consensus_4528#1 TGAT-TGATGTGGGCCTATGTAACCCAGTTAGTGGAACCATGCTTACCAGATCAGTCCAG 93 **** ** * * * *** ** ** * * *** ** * * *** * consensus_4528#0 ATGGGGAGCTTCTGGCCGTGGTTCCTGCTGAAAACACGCCAAGTGTTTCTAAAATATCAC 296 consensus_4528#1 GGNAAGAGNCCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGTTCTTCTAGTTGTTT 153 *** * * * * ** *** * **** * * * consensus_4528#0 ACTCTGAA---GTGTCACCGGNGTTCCGAAACCATTCTAGAGGCTTATCCCTGATATCAA 353 consensus_4528#1 ATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTTGAGGAAAT 213 * * * * * ** * * ** ** * * * *** * consensus_4528#0 AGAGCGCCACACCATCTAAACTAAGCATCTCACACAGTTTTTGGTGGAAATGAGGCGNTC 413 consensus_4528#1 TGGATGCTG-ACAGTGACAGTCTTTCATTCCTTCCCGCCAC-GGAGAAAGTTGCCTAACA 271 * ** ** * * *** * * * ** * ** * consensus_4528#0 TTGATCC-TCTTGATGTATAGTGACAGTGAGTTAGAGGAACAGACATTTGTTGACCAAGA 472 consensus_4528#1 TGGATTCATGGTTATTCCTACTGGCT-TGACATAGATGATGAGCTTTTTCCTTTTCTTTT 330 * *** * * * ** ** ** * *** **** ** ** *** * * consensus_4528#0 AGTGGAAAAAGTCAACCTT-GCTACAGACAAATCCTGGGAGGACTATGCTTCCAGGGAGT 531 consensus_4528#1 GTTTGCTGGAGAGAATNTTCGCTGTTGT--GATACTGATGAGATTATCTAACTA---CCC 385 * * ** ** ** *** * ** *** ** *** * * consensus_4528#0 TTACCCTGGTCTTGAGTAAAACTCTGAAGAA-TGGTCCAAAAGTAATGCTGGAAGCCAAG 590 consensus_4528#1 TGACTGTAGCC---AATGGAGTGTTGTCGGGCTTGTGTATGAGGATTTTTTTTTTTTTGG 442 * ** * * * * * * ** * * ** * ** * * * * consensus_4528#0 ATTGCGATCAGCATGGAATATCCTGTTAGGCCACCTTTTTTCACATTGCAATTGCTTTCG 650 consensus_4528#1 GTGGGGGTGGGTAAGAGCCAATGCAAGATATCCACTTTTTTCACG-----GTCATCATCA 497 * * * * * * * * * * ********** * ** consensus_4528#0 GGAAAGACTGAAGCTTTAAAATGGCACAATGATCTTAGAGCAATGGAAGCTGAGGTGAAT 710 consensus_4528#1 GAAGATA-TGTAACCGTACAACATTCTAAAACTCTTGTTGCATC-----CTGTATT--CT 549 * * * * ** * * ** ** ** **** *** *** * * consensus_4528#0 CTTCACATCCTTCAGGTTGTACCTTCGTCATATGAGGACTACATACTTACTCACCAAATT 770 consensus_4528#1 TCCAGCACGTTTTGGG--AAGCCTTCAGCAT-TAAGCAAAAGAACAGCTTGCACCAAGTA 606 ** ** ** ***** *** * ** * * * ****** * consensus_4528#0 CTG--TGCCTGGCTATGTT-ATTTGATATGCATTTTGATGAGGATCATGGTAAAAGAAAG 827 consensus_4528#1 TAGCTTGCGTGCCAAGGGTGATCAGACTTGTATGT-GACTTGAGTCAT--CTGATGTTTC 663 * *** ** * * * * ** ** ** ** * ** * **** * * consensus_4528#0 GTTACTTCAGTGATTGATGTGGGTCTATGTAAACCAGTTAGTGGAACCATGCTTACCAGA 887 consensus_4528#1 ATCACTTGGGTGACATCTGTGAGGTAATGCATTGCTCGTCCTGAGTCC----TGACCCAA 719 * **** **** **** * *** * * * ** ** * *** * consensus_4528#0 TCAGTCAGGGGAAGAGACCGCAGACAGACTATTTATTGGCGCAGCGCTGATTGGTCTTCT 947 consensus_4528#1 AAAAAAAAAAAAAAAAACAAAAAAAA---------------------------------- 745 * * ** * ** * * * consensus_4528#0 AGNTGGTTATAGAGTATGCATAATGCTGGCCCTACTGAATCAAGCATCTCGTCTCATTTT 1007 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 GAGGAAATTGGATGCTGTCAGTGACAGTCTTTCATTTCNTTCCCGNCNGGGAAAAAGGTG 1067 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 NCTACATGGATTCATGGGTATTCCTACTGGCTTGACATANATTATGAGCTTTTTTCNTTT 1127 consensus_4528#1 ------------------------------------------------------------ consensus_4528#0 TNTTTGGTTGCT 1139 consensus_4528#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||