cluster # 4529

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Oryza sativa
cluster # 4529 cluster # 4529 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4529#0 length = 684 sequences # 2

consensus_4529#1 length = 457 sequences # 1

consensusID : consensus_4529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 684
fasta sequence

                              [TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTCGAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGTTATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAA-AAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATAATTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGGGACTATGCTTTGCAATAGGGCAGTGACTCCCGTAGAACACCATGATCCATACACACCACGCGCTTTCAGTTCCGGCTCC-ACAAAGGAAAAAAAACCCTCAGGAAGTCTCAGAGAGAGAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACACTCAAAAGAAATGGGTTTGGCGGGCCTA]

[+] EMBL CA763386             [TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTCGAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGTTATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAA AAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATAATTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGGGACTATGCTTTGCAATAGGGCAGTGACTCCCGTAGAACACCATGATCCATACACACCACGCGCTTTCAGTTCCGGCTCC ACAAAGGAAAAAAAACCCTCAGGAAGTCTCAGAGAGAGAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACACTCAAAAGAAATGGGTTTGGCGGGCCTA]
[+] EMBL CB636732             [                                                                                                                 ATGCCGTTATGTTCAGTTGTCAACACCTTCAGAGTTCAGAAAGAAGGCAAAGAAAACTCACGAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATTAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGTGACTATGCTTTGCAATAGTGCAGTGACTCCCGTAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGTCTCAAAGAAAGAGAGAAAATGTTGCTACCTTCATGCTTATGt                                                    ]




>consensus_4529#0
TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTC
GAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGT
TATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCAC
AGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGT
TGTGCCTACATTCTTATAAACGGAAAAAAAAAAAACAGTTCTGAAGTACCACGGCTGCGC
GGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACAC
GGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATAA
TTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTG
CAGGGACTATGCTTTGCAATAGGGCAGTGACTCCCGTAGAACACCATGATCCATACACAC
CACGCGCTTTCAGTTCCGGCTCCACAAAGGAAAAAAAACCCTCAGGAAGTCTCAGAGAGA
GAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACACTCA
AAAGAAATGGGTTTGGCGGGCCTA

consensusID : consensus_4529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGTGGACTATGCTTTGNAATAGTGCAGTGACTCCCGTAAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGNCTCAGGAGAAAGAG]

[-] EMBL C97390               [TTTTTTTTTTTTTTTTTTTTTTTTAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACTGCAGTGGACTATGCTTTGNAATAGTGCAGTGACTCCCGTAAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGNCTCAGGAGAAAGAG]




>consensus_4529#1
TTTTTTTTTTTTTTTTTTTTTTTTAGCACAGAAGCTGTTTTATCCAAACTATTTACAGGA
TACATTCATAGCTTCGTACAGAAACACGTTGTGCCTACATTCTTATAAACGGAAAAAAAA
TAAAACAGTTCTGAAGTACCACGGCTGCGCGGGACAAAAGATAATGGCCAATTGTCAAGC
CCAACTCCACCAGCAGGGTTTCATGAACACGGTTACTGTATCCTCATTCTCCATTTCTCG
GTGAGGCTGTATAATCCGAATCCCTGATAATTAGTGAGGATCCAGCTCAAGAAACGAGTT
CTACCTCAGGATCTATGCTTTGCAATACTGCAGTGGACTATGCTTTGNAATAGTGCAGTG
ACTCCCGTAAGAACACCATGATCCATGCACACCACGCGCTTTCAGTTCCGGCTCCAACAA
AGGAAAAAAAACCCTCAGGAAGNCTCAGGAGAAAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4529#0      TTTTTTTTTTTTTTTTGCCACCCACCAACCATTTTAAACAATAACGCCAAGTCGAGACTC 60
consensus_4529#1      ------------------------------------------------------------
                                                                                  

consensus_4529#0      GAGAGTGAAAAGGCACAGAAGCACTGCTCATAACTGAAATCACTCGGGCAGTAATGCCGT 120
consensus_4529#1      ------------------------------------------------------------
                                                                                  

consensus_4529#0      TATGTCAAGTTGTCAACACCTTCAGAGTTCAAAAAGAAGGCAAAGAAAACTCACGAGCAC 180
consensus_4529#1      -------------------------------TTTTTTTTTTTTTTTTTTTTTTTTAGCAC 29
                                                                        *    *****

consensus_4529#0      AGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGT 240
consensus_4529#1      AGAAGCTGTTTTATCCAAACTATTTACAGGATACATTCATAGCTTCGTACAGAAACACGT 89
                      ************************************************************

consensus_4529#0      TGTGCCTACATTCTTATAAACGGAAAAAAAA-AAAACAGTTCTGAAGTACCACGGCTGCG 299
consensus_4529#1      TGTGCCTACATTCTTATAAACGGAAAAAAAATAAAACAGTTCTGAAGTACCACGGCTGCG 149
                      ******************************* ****************************

consensus_4529#0      CGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACA 359
consensus_4529#1      CGGGACAAAAGATAATGGCCAATTGTCAAGCCCAACTCCACCAGCAGGGTTTCATGAACA 209
                      ************************************************************

consensus_4529#0      CGGTTACTGTATCCTCATTCTCCATTTCTCGGGGAGGCTGTATAATCCGAATCCCTGATA 419
consensus_4529#1      CGGTTACTGTATCCTCATTCTCCATTTCTCGGTGAGGCTGTATAATCCGAATCCCTGATA 269
                      ******************************** ***************************

consensus_4529#0      ATTAGGGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACT 479
consensus_4529#1      ATTAGTGAGGATCCAGCTCAAGAAACGAGTTCTACCTCAGGATCTATGCTTTGCAATACT 329
                      ***** ******************************************************

consensus_4529#0      GCAG-GGACTATGCTTTGCAATAGGGCAGTGACTCCCGTA-GAACACCATGATCCATACA 537
consensus_4529#1      GCAGTGGACTATGCTTTGNAATAGTGCAGTGACTCCCGTAAGAACACCATGATCCATGCA 389
                      **** ************* ***** *************** **************** **

consensus_4529#0      CACCACGCGCTTTCAGTTCCGGCTCCA-CAAAGGAAAAAAAACCCTCAGGAAGTCTCAGA 596
consensus_4529#1      CACCACGCGCTTTCAGTTCCGGCTCCAACAAAGGAAAAAAAACCCTCAGGAAGNCTCAG- 448
                      *************************** ************************* ***** 

consensus_4529#0      GAGAGAGAGAAAATGGTGCTACCTTCATACTTATGGATGGTCTAACTTGAGCAGCTCACA 656
consensus_4529#1      GAGAAAGAG--------------------------------------------------- 457
                      **** ****                                                   

consensus_4529#0      CTCAAAAGAAATGGGTTTGGCGGGCCTA 684
consensus_4529#1      ----------------------------