These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [GGACACCGCAGGTTCATGGGTTTTAAGAAAACAATCTTATTGGATCGAAAACTCATTGTTGAGCTGGTCGACCAGTATAATAGTGGTTCTATGCTGTGGGATGAATTCTCTTCACTAATCAAGTCTGTCCACGCAAACCGAATGGGAGCAGCTTCAAAAAGGACAGTGATTCATGACAAACCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGATCCCAATCTTTTACGGACATCATGATATTTTTACTAGCGCGATTGCGCGAGTATACTTATTACCATTTAAACCACCGGTTTTTACAGGCATTAGCCTGGAACCTTGGGTTTCTTTTCCCGAGCTGGACTC] [+] EMBL CB096858 [GGACACCGCAGGTTCATGGGTTTTAAGAAAACAATCTTATTGGATCGAAAACTCATTGTTGAGCTGGTCGACCAGTATAATAGTGGTTCTATGCTGTGGGATGAATTCTCTTCACTAATCAAGTCTGTCCACGCAAACCGAATGGGAGCAGCTTCAAAAAGGACAGTGATTCATGACAAACCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGATCCCAATCTTTTACGGACATCATGATATTTTTACTAGCGCGATTGCGCGAGTATACTTATTACCATTTAAACCACCGGTTTTTACAGGCATTAGCCTGGAACCTTGGGTTTCTTTTCCCGAGCTGGACTC] consensusID : consensus_453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [AGGACAGTGATTCATGACAAACCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGANCCCAATCTTTTACGGACATCATGATATTTTTAATAGCGCAATTGCGCGAGTATACTTATTACCATTACACGTTTACAGCATAGCTGAACTTGTTTCTTCCGAGCTGACTCAAATGGCTCGGCATTTTCAGTTCAGAACTTCAGGTTGGGCCATTGACAAGGGAGTTTGGATGGAAGCTGAAAGAAAGGATGATACAATTGTGAGCTTGTGACTACTTAACTCAAAAA] [+] EMBL C96918 [AGGACAGTGATTCATGACAAACCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGANCCCAATCTTTTACGGACATCATGATATTTTTAATAGCGCAATTGCGCGAGTATACTTATTACCATTACACGTTTACAGCATAGCTGAACTTGTTTCTTCCGAGCTGACTCAAATGGCTCGGCATTTTCAGTTCAGAACTTCAGGTTGGGCCATTGACAAGGGAGTTTGGATGGAAGCTGAAAGAAAGGATGATACAATTGTGAGCTTGTGACTACTTAACTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_453#0 GGACACCGCAGGTTCATGGGTTTTAAGAAAACAATCTTATTGGATCGAAAACTCATTGTT 60 consensus_453#1 ------------------------------------------------------------ consensus_453#0 GAGCTGGTCGACCAGTATAATAGTGGTTCTATGCTGTGGGATGAATTCTCTTCACTAATC 120 consensus_453#1 ------------------------------------------------------------ consensus_453#0 AAGTCTGTCCACGCAAACCGAATGGGAGCAGCTTCAAAAAGGACAGTGATTCATGACAAA 180 consensus_453#1 ---------------------------------------AGGACAGTGATTCATGACAAA 21 ********************* consensus_453#0 CCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGATCCCAATCTT 240 consensus_453#1 CCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGANCCCAATCTT 81 ************************************************** ********* consensus_453#0 TTACGGACATCATGATATTTTTACTAGCGCGATTGCGCGAGTATACTTATTACCATT--- 297 consensus_453#1 TTACGGACATCATGATATTTTTAATAGCGCAATTGCGCGAGTATACTTATTACCATTACA 141 *********************** ****** ************************** consensus_453#0 ----TAAACCAC---------CGGTTTTTACAGGC-------ATTAGCCTGGAACCTTGG 337 consensus_453#1 CGTTTACAGCATAGCTGAACTTGTTTCTTCCGAGCTGACTCAAATGGCTCGGCATTTTCA 201 ** * ** * ** ** * ** * * ** ** * ** consensus_453#0 GTTTCTTTTCCCGAGCTGGACTC------------------------------------- 360 consensus_453#1 GTTCAGAACTTCAGGTTGGGCCATTGACAAGGGAGTTTGGATGGAAGCTGAAAGAAAGGA 261 *** * * *** * consensus_453#0 -------------------------------------- consensus_453#1 TGATACAATTGTGAGCTTGTGACTACTTAACTCAAAAA 299 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||