cluster # 453

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Oryza sativa
cluster # 453 cluster # 453 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_453#0 length = 360 sequences # 1

consensus_453#1 length = 299 sequences # 1

consensusID : consensus_453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [GGACACCGCAGGTTCATGGGTTTTAAGAAAACAATCTTATTGGATCGAAAACTCATTGTTGAGCTGGTCGACCAGTATAATAGTGGTTCTATGCTGTGGGATGAATTCTCTTCACTAATCAAGTCTGTCCACGCAAACCGAATGGGAGCAGCTTCAAAAAGGACAGTGATTCATGACAAACCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGATCCCAATCTTTTACGGACATCATGATATTTTTACTAGCGCGATTGCGCGAGTATACTTATTACCATTTAAACCACCGGTTTTTACAGGCATTAGCCTGGAACCTTGGGTTTCTTTTCCCGAGCTGGACTC]

[+] EMBL CB096858             [GGACACCGCAGGTTCATGGGTTTTAAGAAAACAATCTTATTGGATCGAAAACTCATTGTTGAGCTGGTCGACCAGTATAATAGTGGTTCTATGCTGTGGGATGAATTCTCTTCACTAATCAAGTCTGTCCACGCAAACCGAATGGGAGCAGCTTCAAAAAGGACAGTGATTCATGACAAACCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGATCCCAATCTTTTACGGACATCATGATATTTTTACTAGCGCGATTGCGCGAGTATACTTATTACCATTTAAACCACCGGTTTTTACAGGCATTAGCCTGGAACCTTGGGTTTCTTTTCCCGAGCTGGACTC]




>consensus_453#0
GGACACCGCAGGTTCATGGGTTTTAAGAAAACAATCTTATTGGATCGAAAACTCATTGTT
GAGCTGGTCGACCAGTATAATAGTGGTTCTATGCTGTGGGATGAATTCTCTTCACTAATC
AAGTCTGTCCACGCAAACCGAATGGGAGCAGCTTCAAAAAGGACAGTGATTCATGACAAA
CCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGATCCCAATCTT
TTACGGACATCATGATATTTTTACTAGCGCGATTGCGCGAGTATACTTATTACCATTTAA
ACCACCGGTTTTTACAGGCATTAGCCTGGAACCTTGGGTTTCTTTTCCCGAGCTGGACTC

consensusID : consensus_453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [AGGACAGTGATTCATGACAAACCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGANCCCAATCTTTTACGGACATCATGATATTTTTAATAGCGCAATTGCGCGAGTATACTTATTACCATTACACGTTTACAGCATAGCTGAACTTGTTTCTTCCGAGCTGACTCAAATGGCTCGGCATTTTCAGTTCAGAACTTCAGGTTGGGCCATTGACAAGGGAGTTTGGATGGAAGCTGAAAGAAAGGATGATACAATTGTGAGCTTGTGACTACTTAACTCAAAAA]

[+] EMBL C96918               [AGGACAGTGATTCATGACAAACCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGANCCCAATCTTTTACGGACATCATGATATTTTTAATAGCGCAATTGCGCGAGTATACTTATTACCATTACACGTTTACAGCATAGCTGAACTTGTTTCTTCCGAGCTGACTCAAATGGCTCGGCATTTTCAGTTCAGAACTTCAGGTTGGGCCATTGACAAGGGAGTTTGGATGGAAGCTGAAAGAAAGGATGATACAATTGTGAGCTTGTGACTACTTAACTCAAAAA]




>consensus_453#1
AGGACAGTGATTCATGACAAACCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAG
TGCTTGCGAGANCCCAATCTTTTACGGACATCATGATATTTTTAATAGCGCAATTGCGCG
AGTATACTTATTACCATTACACGTTTACAGCATAGCTGAACTTGTTTCTTCCGAGCTGAC
TCAAATGGCTCGGCATTTTCAGTTCAGAACTTCAGGTTGGGCCATTGACAAGGGAGTTTG
GATGGAAGCTGAAAGAAAGGATGATACAATTGTGAGCTTGTGACTACTTAACTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_453#0      GGACACCGCAGGTTCATGGGTTTTAAGAAAACAATCTTATTGGATCGAAAACTCATTGTT 60
consensus_453#1      ------------------------------------------------------------
                                                                                 

consensus_453#0      GAGCTGGTCGACCAGTATAATAGTGGTTCTATGCTGTGGGATGAATTCTCTTCACTAATC 120
consensus_453#1      ------------------------------------------------------------
                                                                                 

consensus_453#0      AAGTCTGTCCACGCAAACCGAATGGGAGCAGCTTCAAAAAGGACAGTGATTCATGACAAA 180
consensus_453#1      ---------------------------------------AGGACAGTGATTCATGACAAA 21
                                                            *********************

consensus_453#0      CCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGATCCCAATCTT 240
consensus_453#1      CCGAAGGAAGAGGACTACTTCTATGCTAACCCTCAAGAGTGCTTGCGAGANCCCAATCTT 81
                     ************************************************** *********

consensus_453#0      TTACGGACATCATGATATTTTTACTAGCGCGATTGCGCGAGTATACTTATTACCATT--- 297
consensus_453#1      TTACGGACATCATGATATTTTTAATAGCGCAATTGCGCGAGTATACTTATTACCATTACA 141
                     *********************** ****** **************************   

consensus_453#0      ----TAAACCAC---------CGGTTTTTACAGGC-------ATTAGCCTGGAACCTTGG 337
consensus_453#1      CGTTTACAGCATAGCTGAACTTGTTTCTTCCGAGCTGACTCAAATGGCTCGGCATTTTCA 201
                         ** * **           * ** ** *  **       * * **  ** *  **  

consensus_453#0      GTTTCTTTTCCCGAGCTGGACTC------------------------------------- 360
consensus_453#1      GTTCAGAACTTCAGGTTGGGCCATTGACAAGGGAGTTTGGATGGAAGCTGAAAGAAAGGA 261
                     ***        *  * *** *                                       

consensus_453#0      --------------------------------------
consensus_453#1      TGATACAATTGTGAGCTTGTGACTACTTAACTCAAAAA 299