cluster # 4535

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Oryza sativa
cluster # 4535 cluster # 4535 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4535#0 length = 441 sequences # 1

consensus_4535#1 length = 404 sequences # 1
consensus_4535#2 length = 367 sequences # 1

consensusID : consensus_4535#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [GATTAAACACAGCTGTCTTGTTACTTTAGGGCTTCATGTTTTGTCTCCAACAATTCGCCTGCATCTGTTCGCTGGTCGCTTGCATCGTTGGCAGCGAAGAACTTTCCGAGGCCTCGCAGTTGATTTCCTGCATATCTAACATGGTCTACTGGACGTAAGGCTCTCAACTCAAGTATTCATCCTTCTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGTGCAGGGTTTGCTCTTGTATGCAGGTAATGGCACATTTTTTTTTTTACTTTCCTCCTGAATAATCTCACTGCTTTAAATTCCTGATATCTTATGATGAAACTGCAAAATGTAAATTCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCT]

[+] EMBL C97222               [GATTAAACACAGCTGTCTTGTTACTTTAGGGCTTCATGTTTTGTCTCCAACAATTCGCCTGCATCTGTTCGCTGGTCGCTTGCATCGTTGGCAGCGAAGAACTTTCCGAGGCCTCGCAGTTGATTTCCTGCATATCTAACATGGTCTACTGGACGTAAGGCTCTCAACTCAAGTATTCATCCTTCTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGTGCAGGGTTTGCTCTTGTATGCAGGTAATGGCACATTTTTTTTTTTACTTTCCTCCTGAATAATCTCACTGCTTTAAATTCCTGATATCTTATGATGAAACTGCAAAATGTAAATTCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCT]




>consensus_4535#0
GATTAAACACAGCTGTCTTGTTACTTTAGGGCTTCATGTTTTGTCTCCAACAATTCGCCT
GCATCTGTTCGCTGGTCGCTTGCATCGTTGGCAGCGAAGAACTTTCCGAGGCCTCGCAGT
TGATTTCCTGCATATCTAACATGGTCTACTGGACGTAAGGCTCTCAACTCAAGTATTCAT
CCTTCTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCA
ATGTGCAGGGTTTGCTCTTGTATGCAGGTAATGGCACATTTTTTTTTTTACTTTCCTCCT
GAATAATCTCACTGCTTTAAATTCCTGATATCTTATGATGAAACTGCAAAATGTAAATTC
AGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTTGGACCTATGACAGTG
CCTCCAATGCAGCAGATGTCT

consensusID : consensus_4535#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence

                              [CTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGTGCAGGGTTTGCTCTTGTATGCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCTCGCATCGATCAACCGGTTCCGCCTTATGTTGGGTATGCGCCACAGGCACAGCCAGCATACTACAGGTAGCCTGATGGTGGCTATCCAAGAGTTCAACATACAGATCATGCATGCTCAAGATTTTCTGTAGCAAAGTGAAGGATGGTGATCAAGTAGATACATAGTGTTTGTGAGAATGTGAAGTGTCTCTAGTTTCTTTAGGTGATTTAGATGTTTCAGATTGGTATTGAACTTGCGATTTTT]

[+] EMBL CF318438             [CTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGTGCAGGGTTTGCTCTTGTATGCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCTCGCATCGATCAACCGGTTCCGCCTTATGTTGGGTATGCGCCACAGGCACAGCCAGCATACTACAGGTAGCCTGATGGTGGCTATCCAAGAGTTCAACATACAGATCATGCATGCTCAAGATTTTCTGTAGCAAAGTGAAGGATGGTGATCAAGTAGATACATAGTGTTTGTGAGAATGTGAAGTGTCTCTAGTTTCTTTAGGTGATTTAGATGTTTCAGATTGGTATTGAACTTGCGATTTTT]




>consensus_4535#1
CTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGT
GCAGGGTTTGCTCTTGTATGCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCA
AGTTTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCTCGCATCGATCAACCGGTTC
CGCCTTATGTTGGGTATGCGCCACAGGCACAGCCAGCATACTACAGGTAGCCTGATGGTG
GCTATCCAAGAGTTCAACATACAGATCATGCATGCTCAAGATTTTCTGTAGCAAAGTGAA
GGATGGTGATCAAGTAGATACATAGTGTTTGTGAGAATGTGAAGTGTCTCTAGTTTCTTT
AGGTGATTTAGATGTTTCAGATTGGTATTGAACTTGCGATTTTT

consensusID : consensus_4535#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [TTTTTTTATTTCTTTTTTGGAGGAATACAAAACCATCCAATGCCCCCAATTTTTTTCACACAAAAATGTTTCAGGAACAAAAAGGGAAAAACCCCCCCCATTCCCACATAAAAATCGCAAGTTCAATACCAATCTTTTTTTTTTTAATCACCTAAAAAAACTTGAGACACTTTACATTCTTACTTATACTATGGATTTACTTGATCACCATCCTTCACTTTGGTACAAAAAAACTTGAGCCTGCCTGAACTGGATGTTGAACCCTTGGATAACCACCATCAGGCTACCTGTAGTATGCTGGCTGGGCCTGGGGGGCATACCCAACATAAAGGGGAACCGGTTGATCGATGCCAAACATCTGCTGCAT]

[+] EMBL CF318439             [TTTTTTTATTTCTTTTTTGGAGGAATACAAAACCATCCAATGCCCCCAATTTTTTTCACACAAAAATGTTTCAGGAACAAAAAGGGAAAAACCCCCCCCATTCCCACATAAAAATCGCAAGTTCAATACCAATCTTTTTTTTTTTAATCACCTAAAAAAACTTGAGACACTTTACATTCTTACTTATACTATGGATTTACTTGATCACCATCCTTCACTTTGGTACAAAAAAACTTGAGCCTGCCTGAACTGGATGTTGAACCCTTGGATAACCACCATCAGGCTACCTGTAGTATGCTGGCTGGGCCTGGGGGGCATACCCAACATAAAGGGGAACCGGTTGATCGATGCCAAACATCTGCTGCAT]




>consensus_4535#2
TTTTTTTATTTCTTTTTTGGAGGAATACAAAACCATCCAATGCCCCCAATTTTTTTCACA
CAAAAATGTTTCAGGAACAAAAAGGGAAAAACCCCCCCCATTCCCACATAAAAATCGCAA
GTTCAATACCAATCTTTTTTTTTTTAATCACCTAAAAAAACTTGAGACACTTTACATTCT
TACTTATACTATGGATTTACTTGATCACCATCCTTCACTTTGGTACAAAAAAACTTGAGC
CTGCCTGAACTGGATGTTGAACCCTTGGATAACCACCATCAGGCTACCTGTAGTATGCTG
GCTGGGCCTGGGGGGCATACCCAACATAAAGGGGAACCGGTTGATCGATGCCAAACATCT
GCTGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4535#0      --GATTAAACACAGCTGTCTTGTTACTT--TAGGGCTTCATGTTTTGTCTCCAACAATTC 56
consensus_4535#1      CTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGT 60
consensus_4535#2      -----------------TTTTTTTATTT-----CTTTTTTGGAGGAATACAAAACCATCC 38
                                       * **   * **        **         *      * **  

consensus_4535#0      GCCTGCATCTGTTCGCTGGTCGCTTGCATCGTTGGCAGCGAAGAACTTTCCGAGGCCTCG 116
consensus_4535#1      GCAGG-GTTTGCTC-TTGTATGCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGG 118
consensus_4535#2      AATGCCCCCAATTTTTTTCACACAAAAATGTTTCAGGAACAAAAAGGGAAAAACCCCCCC 98
                                  *   *     *    *             * *        *       

consensus_4535#0      CAGTTGATTTCCTGCATATCTAACATGGTCTACTGGACGTAAGGC-TCTCAACTCAAGTA 175
consensus_4535#1      CAAGT------TTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCTCGCATCGATCA 172
consensus_4535#2      CATTC------CCACATA---AAAATCGCAAGTTCAATACCAA---TCTTTTTTTTTTTA 146
                      **             *      * *  *             *    ***    *     *

consensus_4535#0      TTCA--TCCTTCTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATC 233
consensus_4535#1      ACCGGTTCCGCCTTATGTTGGGTATGCGCCACAGGCACAGCCAGCATACTACAGGTAGCC 232
consensus_4535#2      ATCA---CCTAAAAAAACTTGAGACACTTTACATTC-TTACTTATACTATGGAT-TTACT 201
                        *    **     *     *                   *    *      *  *    

consensus_4535#0      TGTTGCAA--TGTGCAGGGTTTGCTCTTGTATGCAGGTAATGGCACATTTTTTTTTTTAC 291
consensus_4535#1      TGATGGTGGCTATCCAAGAGTT----CAACATACAGATCATGCATGCTCAAGATTTTCTG 288
consensus_4535#2      TGATCAC---CATCCTTCACTT-TGGTACAAAAAAACTTGAGCCTGCCTGAACTGGATGT 257
                      ** *        * *     **        *   *  *   *           *      

consensus_4535#0      TTTCCTCCTGAATAATCTCACTGCTTTAAATTCCTGATATCTTATGATGAAACTGCAAAA 351
consensus_4535#1      TAGCAAAGTGAAGGATGGTGATCAAGTAGATACATAGTGTTT----GTGAGAATGTGAAG 344
consensus_4535#2      TGAACCCTTGGATAACCACCATCAGGCT-ACCTGTAGTATGCTG-GCTGGGCCTGGGGGG 315
                      *       ** *  *      *       *    *  * *       **    **     

consensus_4535#0      TGTAAATTCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTTGGACCT 411
consensus_4535#1      TGTC--TCTAGTTTCTTTAGGTGATTTAGATGTTTCAGATTGGTATTGAACTTGCGATTT 402
consensus_4535#2      CATA--------CCCAACATAAAGGGGAACCGGTT--GATCGATGCCAAACATCTGCTGC 365
                        *           *   *        *   *     **  *      *   *  *    

consensus_4535#0      ATGACAGTGCCTCCAATGCAGCAGATGTCT 441
consensus_4535#1      TT---------------------------- 404
consensus_4535#2      AT---------------------------- 367
                       *