These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [GATTAAACACAGCTGTCTTGTTACTTTAGGGCTTCATGTTTTGTCTCCAACAATTCGCCTGCATCTGTTCGCTGGTCGCTTGCATCGTTGGCAGCGAAGAACTTTCCGAGGCCTCGCAGTTGATTTCCTGCATATCTAACATGGTCTACTGGACGTAAGGCTCTCAACTCAAGTATTCATCCTTCTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGTGCAGGGTTTGCTCTTGTATGCAGGTAATGGCACATTTTTTTTTTTACTTTCCTCCTGAATAATCTCACTGCTTTAAATTCCTGATATCTTATGATGAAACTGCAAAATGTAAATTCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCT] [+] EMBL C97222 [GATTAAACACAGCTGTCTTGTTACTTTAGGGCTTCATGTTTTGTCTCCAACAATTCGCCTGCATCTGTTCGCTGGTCGCTTGCATCGTTGGCAGCGAAGAACTTTCCGAGGCCTCGCAGTTGATTTCCTGCATATCTAACATGGTCTACTGGACGTAAGGCTCTCAACTCAAGTATTCATCCTTCTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGTGCAGGGTTTGCTCTTGTATGCAGGTAATGGCACATTTTTTTTTTTACTTTCCTCCTGAATAATCTCACTGCTTTAAATTCCTGATATCTTATGATGAAACTGCAAAATGTAAATTCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCT] consensusID : consensus_4535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [CTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGTGCAGGGTTTGCTCTTGTATGCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCTCGCATCGATCAACCGGTTCCGCCTTATGTTGGGTATGCGCCACAGGCACAGCCAGCATACTACAGGTAGCCTGATGGTGGCTATCCAAGAGTTCAACATACAGATCATGCATGCTCAAGATTTTCTGTAGCAAAGTGAAGGATGGTGATCAAGTAGATACATAGTGTTTGTGAGAATGTGAAGTGTCTCTAGTTTCTTTAGGTGATTTAGATGTTTCAGATTGGTATTGAACTTGCGATTTTT] [+] EMBL CF318438 [CTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGTGCAGGGTTTGCTCTTGTATGCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCTCGCATCGATCAACCGGTTCCGCCTTATGTTGGGTATGCGCCACAGGCACAGCCAGCATACTACAGGTAGCCTGATGGTGGCTATCCAAGAGTTCAACATACAGATCATGCATGCTCAAGATTTTCTGTAGCAAAGTGAAGGATGGTGATCAAGTAGATACATAGTGTTTGTGAGAATGTGAAGTGTCTCTAGTTTCTTTAGGTGATTTAGATGTTTCAGATTGGTATTGAACTTGCGATTTTT] consensusID : consensus_4535#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [TTTTTTTATTTCTTTTTTGGAGGAATACAAAACCATCCAATGCCCCCAATTTTTTTCACACAAAAATGTTTCAGGAACAAAAAGGGAAAAACCCCCCCCATTCCCACATAAAAATCGCAAGTTCAATACCAATCTTTTTTTTTTTAATCACCTAAAAAAACTTGAGACACTTTACATTCTTACTTATACTATGGATTTACTTGATCACCATCCTTCACTTTGGTACAAAAAAACTTGAGCCTGCCTGAACTGGATGTTGAACCCTTGGATAACCACCATCAGGCTACCTGTAGTATGCTGGCTGGGCCTGGGGGGCATACCCAACATAAAGGGGAACCGGTTGATCGATGCCAAACATCTGCTGCAT] [+] EMBL CF318439 [TTTTTTTATTTCTTTTTTGGAGGAATACAAAACCATCCAATGCCCCCAATTTTTTTCACACAAAAATGTTTCAGGAACAAAAAGGGAAAAACCCCCCCCATTCCCACATAAAAATCGCAAGTTCAATACCAATCTTTTTTTTTTTAATCACCTAAAAAAACTTGAGACACTTTACATTCTTACTTATACTATGGATTTACTTGATCACCATCCTTCACTTTGGTACAAAAAAACTTGAGCCTGCCTGAACTGGATGTTGAACCCTTGGATAACCACCATCAGGCTACCTGTAGTATGCTGGCTGGGCCTGGGGGGCATACCCAACATAAAGGGGAACCGGTTGATCGATGCCAAACATCTGCTGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4535#0 --GATTAAACACAGCTGTCTTGTTACTT--TAGGGCTTCATGTTTTGTCTCCAACAATTC 56 consensus_4535#1 CTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATCTGTTGCAATGT 60 consensus_4535#2 -----------------TTTTTTTATTT-----CTTTTTTGGAGGAATACAAAACCATCC 38 * ** * ** ** * * ** consensus_4535#0 GCCTGCATCTGTTCGCTGGTCGCTTGCATCGTTGGCAGCGAAGAACTTTCCGAGGCCTCG 116 consensus_4535#1 GCAGG-GTTTGCTC-TTGTATGCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGG 118 consensus_4535#2 AATGCCCCCAATTTTTTTCACACAAAAATGTTTCAGGAACAAAAAGGGAAAAACCCCCCC 98 * * * * * * * consensus_4535#0 CAGTTGATTTCCTGCATATCTAACATGGTCTACTGGACGTAAGGC-TCTCAACTCAAGTA 175 consensus_4535#1 CAAGT------TTGGACCTATGACAGTGCCTCCAATGCAGCAGATGTCTCGCATCGATCA 172 consensus_4535#2 CATTC------CCACATA---AAAATCGCAAGTTCAATACCAA---TCTTTTTTTTTTTA 146 ** * * * * * *** * * consensus_4535#0 TTCA--TCCTTCTGAAATCTGATTTCTTTCTTTCCAATTACCAGTATTTCTGATGTTATC 233 consensus_4535#1 ACCGGTTCCGCCTTATGTTGGGTATGCGCCACAGGCACAGCCAGCATACTACAGGTAGCC 232 consensus_4535#2 ATCA---CCTAAAAAAACTTGAGACACTTTACATTC-TTACTTATACTATGGAT-TTACT 201 * ** * * * * * * consensus_4535#0 TGTTGCAA--TGTGCAGGGTTTGCTCTTGTATGCAGGTAATGGCACATTTTTTTTTTTAC 291 consensus_4535#1 TGATGGTGGCTATCCAAGAGTT----CAACATACAGATCATGCATGCTCAAGATTTTCTG 288 consensus_4535#2 TGATCAC---CATCCTTCACTT-TGGTACAAAAAAACTTGAGCCTGCCTGAACTGGATGT 257 ** * * * ** * * * * * consensus_4535#0 TTTCCTCCTGAATAATCTCACTGCTTTAAATTCCTGATATCTTATGATGAAACTGCAAAA 351 consensus_4535#1 TAGCAAAGTGAAGGATGGTGATCAAGTAGATACATAGTGTTT----GTGAGAATGTGAAG 344 consensus_4535#2 TGAACCCTTGGATAACCACCATCAGGCT-ACCTGTAGTATGCTG-GCTGGGCCTGGGGGG 315 * ** * * * * * * * ** ** consensus_4535#0 TGTAAATTCAGACACAGCACAAGGTCGAGATGGACAAGAGGGACGGCAAGTTTTGGACCT 411 consensus_4535#1 TGTC--TCTAGTTTCTTTAGGTGATTTAGATGTTTCAGATTGGTATTGAACTTGCGATTT 402 consensus_4535#2 CATA--------CCCAACATAAAGGGGAACCGGTT--GATCGATGCCAAACATCTGCTGC 365 * * * * * ** * * * * consensus_4535#0 ATGACAGTGCCTCCAATGCAGCAGATGTCT 441 consensus_4535#1 TT---------------------------- 404 consensus_4535#2 AT---------------------------- 367 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||