cluster # 4536

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Oryza sativa
cluster # 4536 cluster # 4536 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4536#0 length = 343 sequences # 1

consensus_4536#1 length = 186 sequences # 2

consensusID : consensus_4536#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [GGGGCATCCAAGGTGAACATTTCCTTGGTGGTCCATGACAGTGAGGCAAAGCAGTGCGTTCAAGCCCTCCACTCAGCATTCTTTGTATTATTGGTTTCTTGCCAGAAGTCAATGATATTCTGCAGGACGACTCTGTGGCACATTCCAATGGCACAGTTTACAGGCATTAGTCAGAAGTTTAATCCTTATGTTGTACTGTAGTTATACCATTTGCAGCCTCAGAATCTGATCGTTCTCAGGCTAAAAACCCAATGTTGTAGGAGGGAAGGAGCAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAATGGGCATACTACCATTGTTACC]

[+] EMBL CF325513             [GGGGCATCCAAGGTGAACATTTCCTTGGTGGTCCATGACAGTGAGGCAAAGCAGTGCGTTCAAGCCCTCCACTCAGCATTCTTTGTATTATTGGTTTCTTGCCAGAAGTCAATGATATTCTGCAGGACGACTCTGTGGCACATTCCAATGGCACAGTTTACAGGCATTAGTCAGAAGTTTAATCCTTATGTTGTACTGTAGTTATACCATTTGCAGCCTCAGAATCTGATCGTTCTCAGGCTAAAAACCCAATGTTGTAGGAGGGAAGGAGCAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAATGGGCATACTACCATTGTTACC]




>consensus_4536#0
GGGGCATCCAAGGTGAACATTTCCTTGGTGGTCCATGACAGTGAGGCAAAGCAGTGCGTT
CAAGCCCTCCACTCAGCATTCTTTGTATTATTGGTTTCTTGCCAGAAGTCAATGATATTC
TGCAGGACGACTCTGTGGCACATTCCAATGGCACAGTTTACAGGCATTAGTCAGAAGTTT
AATCCTTATGTTGTACTGTAGTTATACCATTTGCAGCCTCAGAATCTGATCGTTCTCAGG
CTAAAAACCCAATGTTGTAGGAGGGAAGGAGCAATTCCGGCTTTTTATAGTATTCTAGTT
GGCTCTGGTTTACTACCAAAATGGGCATACTACCATTGTTACC

consensusID : consensus_4536#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 186
fasta sequence

                              [ATGGACTGAAGGAGTAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF318430             [ATGGACTGAAGGAGTAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                                                                              ]
[+] EMBL CF327002             [             GTAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_4536#1
ATGGACTGAAGGAGTAATTCCGGCTTTTTATAGTATTCTAGTTGGCTCTGGTTTACTACC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4536#0      GGGGCATCCAAGGTGAACATTTCCTTGGTGGTCCATGACAGTGAGGCAAAGCAGTGCGTT 60
consensus_4536#1      ----------------------------------------ATGGACTGAAGGAGTA-ATT 19
                                                               **     *** ***   **

consensus_4536#0      CAAGCCCTCCACTCAGCATTCTTTGTATTATTGGTTTCTTGCCAGAAGTCAATGATATTC 120
consensus_4536#1      CCGGCTTTTTAT--AGTATTCTAGTTGGCTCTGGTTTACTACCAAAAAAAAAAAAAAAAA 77
                      *  **  *  *   ** *****   *     ******  * *** **   **  * *   

consensus_4536#0      TGCAGGACGACTCTGTGGCACATTCCAATGGCACAGTTTACAGGCATTAGTCAGAAGTTT 180
consensus_4536#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 137
                         *  *  *         * *    **    * *    * *   *  *   * **    

consensus_4536#0      AATCCTTATGTTGTACTGTAGTTATACCATTTGCAGCCTCAGAATCTGATCGTTCTCAGG 240
consensus_4536#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 186
                      **     *      *    *   * *  *     *     * **    *           

consensus_4536#0      CTAAAAACCCAATGTTGTAGGAGGGAAGGAGCAATTCCGGCTTTTTATAGTATTCTAGTT 300
consensus_4536#1      ------------------------------------------------------------
                                                                                  

consensus_4536#0      GGCTCTGGTTTACTACCAAAATGGGCATACTACCATTGTTACC 343
consensus_4536#1      -------------------------------------------