These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence [AAATGAAATTGTACTTCCAATGGAAGGGCAACCATCCAGGACACTGTGCTTCTGTCTTAGCAAACTCAAACTACTGATGTGGGTTACATGTTACCTCTAAATCGTGATGCCATAAGAAATTTGGCTTGTATATGTACATCAGCTATAACTAGGATTCCACTGCAGTGTTGTTCTTGTGGAATATGTACAAATGACTTCAAAATTTGGGGCTCCCATCTTGCCAGAACTGAATTCTATAAACTTTTAGTTGCACAACTAAATTTGTTAAACTAGTTCATGTGTATATAGTTTCTCCTGCGGTGGTGAACAGGCCGATTTCTTAGAACCACGATTTTGTGCAGGGTATAGTCTAAGAGAGCTTTTAAGATGATCAATTCCTTGTCTTCTAAGAGCATTTGGGTTGATACCTGCCTTGTGAGCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACATTTAGCGCCTCTATATTGAACTTGTCAGGGGTATCATCAAGAACTGTTTCATTTTCTTGAACCGTAATGATTAAGGGCTTGTTCTTTGTAGCAGTTCTAGCAAAGGCAATAGTACCATCTCCTCCGCAAGCATCTTTTGGAAGAATCACACTATCAACATCACTAGCCACTATGCAACCATTATCCATGTTTCCATTCCTCCTCATCACATATTGAGGGGCATTGCTTAACCCGGCAAGCACACAAGGTAGAAAGGTATGTCCAATCTCTTCAGCAGCAGATCTTGGGGACAC] [+] EMBL CB653148 [AAATGAAATTGTACTTCCAATGGAAGGGCAACCATCCAGGACACTGTGCTTCTGTCTTAGCAAACTCAAACTACTGATGTGGGTTACATGTTACCTCTAAATCGTGATGCCATAAGAAATTTGGCTTGTATATGTACATCAGCTATAACTAGGATTCCACTGCAGTGTTGTTCTTGTGGAATATGTACAAATGACTTCAAAATTTGGGGCTCCCATCTTGCCAGAACTGAATTCTATAAACTTTTAGTTGCACAACTAAATTTGTTAAACTAGTTCATGTGTATATAGTTTCTCCTGCGGTGGTGAACAGGCCGATTTCTTAGAACCACGATTTTGTGCAGGGTATAGTCTAAGAGAGCTTTTAAGATGATCAATTCCTTGTCTTCTAAGAGCATTTGGGTTGATACCTGCCTTGTGAGCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACATTTAGCGCCTCTATATTGAACTTGTCAGGGGTATCATCAAGAACTGTTTCATTTTCTTGAACCGTAATGATTAAGGGCTTGTTCTTTGTAGCAGTTCTAGCAAAGGCAATAGTACCATCTCCTCCGCAAGCATCTTTTGGAAGAATCACACTATCAACATCACTAGCCACTATGCAACCATTATCCATGTTTCCATTCCTCCTCATCACATATTGAGGGGCATTGCTTAACCCGGCAAGCACACAAGGTAGAAAGGTATGTCCAATCTCTTCAGCAGCAGATCTTGGGGACAC] [-] EMBL C96942 [ tttTTCTGTCTTAGCAAACTCAAACTACTGATGTGGGNTACATGTTACCTCTAAATCGTGATGCCATAAGAAATTTGNCTTGTATATGTACATCAGCTATAACTAGGATTCCACTGCAGTGTTGTTCTTGTGGAATATGTACAAATGACTTCAAAATTTGGGGCTCCCATCTTGCCAGAACTGAATTCTATAAACTTTTAGTTGCACAACTAAATTTGTTAAAC ] consensusID : consensus_4539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence [ATTCATTAATTAGCAAACGCACTTATTGGCTCCATTCGTTTCATTTATGCTTATGCAAGATGTACTAATTAATGTGTTGTTAGTATACTTTAGGATCGATCAAATTAAACCCTGGTTGCTCTTCAATCCATCCTCACGATCCTGTCCAAGTAACAAGTAGATGCAAGGCGTAGAGAGGGTAAGCTCTAGGTTCAATTCTGCAACAGCCCGGTTATCATCTTGGTGGTTACAGCTACTTGCGTCGTCGGCGACTGTACATTCATCGCCATTGACGTCCTTGGAGGAAGAAGATGAATTGTGGCCCGGATGCTTTGCACCACGTTCGTCGTGAGCTTCGCTTCGCAGACGGCGACGCCGTCGACGGTGTTCATCATCATGTAGCGAGGGTGGATGCTCTATAGTACTATCCATCAGCTTGGAGTTCCAGTGGTTCATGACCTCTTTGTCTGTCCTCCCCGGTAGCCTCCCAGCGATGAGGGACCAACGGTTGCCGAGCAAAGCGTGCAGCTTGAGGAGGAGCTCGTCCTCTTCCTCGGAGAAGCTCCTCCTCTTTCTGCTCCGGCTAAGCGGCGACGGCGGATCACCGGCCGGCAAGTGCTCGGAGATGAGCCGTGGTGGAGGCTGCGATGACACCTGCAGACTTGCAGAGCTGCCTTGTGAGCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACATTTAGCGCCTCTATATTGAACTTGTCAGGGGTATCATCAAGAA] [+] EMBL CB678506 [ATTCATTAATTAGCAAACGCACTTATTGGCTCCATTCGTTTCATTTATGCTTATGCAAGATGTACTAATTAATGTGTTGTTAGTATACTTTAGGATCGATCAAATTAAACCCTGGTTGCTCTTCAATCCATCCTCACGATCCTGTCCAAGTAACAAGTAGATGCAAGGCGTAGAGAGGGTAAGCTCTAGGTTCAATTCTGCAACAGCCCGGTTATCATCTTGGTGGTTACAGCTACTTGCGTCGTCGGCGACTGTACATTCATCGCCATTGACGTCCTTGGAGGAAGAAGATGAATTGTGGCCCGGATGCTTTGCACCACGTTCGTCGTGAGCTTCGCTTCGCAGACGGCGACGCCGTCGACGGTGTTCATCATCATGTAGCGAGGGTGGATGCTCTATAGTACTATCCATCAGCTTGGAGTTCCAGTGGTTCATGACCTCTTTGTCTGTCCTCCCCGGTAGCCTCCCAGCGATGAGGGACCAACGGTTGCCGAGCAAAGCGTGCAGCTTGAGGAGGAGCTCGTCCTCTTCCTCGGAGAAGCTCCTCCTCTTTCTGCTCCGGCTAAGCGGCGACGGCGGATCACCGGCCGGCAAGTGCTCGGAGATGAGCCGTGGTGGAGGCTGCGATGACACCTGCAGACTTGCAGAGCTGCCTTGTGAGCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACATTTAGCGCCTCTATATTGAACTTGTCAGGGGTATCATCAAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4539#0 AAATGAAATTGTACTTCCAATGG-AAGGGCAACCATCCAGGACACTGTGCTTCTGTCTTA 59 consensus_4539#1 ----------ATTCATTAATTAGCAAACGCACTTATTGGCTCCATTCGTTTCATTTATGC 50 * * * * * * ** *** ** ** * * * * * consensus_4539#0 GCAAACTCAAACTACTGATGTGGGTTACATGTTACCTCTAAATCGTGATGCCATAAGAAA 119 consensus_4539#1 TTATGCAAGATGTACTAAT-----TAATGTGTTGTTAGTATACTTTAGGATCG-ATCAAA 104 * * * **** ** * * **** ** * * * * *** consensus_4539#0 TTTGGCTTGTATATGTACATCAG-CTATAACTAGGATTCCACTGCAGTGTTGTTCTTGTG 178 consensus_4539#1 TTAAACCC-TGGTTGCTCTTCAATCCATCCTCACGATCCTGTCCAAGTAACAAGTAGATG 163 ** * * ** * *** * ** * *** * *** ** consensus_4539#0 GAATATGTACAAATGACTTCAAAATTTGGGGCTCCCATCTTGCCAGAACTGAATTCTATA 238 consensus_4539#1 CAAGGCGTAGAGAGGGT---AAGCTCTAGG--TTCAATTCTGCAACAGCCCGGT--TATC 216 ** *** * * * ** * * ** * * ** *** * * * * *** consensus_4539#0 AACTTTTAGTTGCACAACTAAATTTGTTAAACTAGTTCATGTGTATATAGTTTCTCCTGC 298 consensus_4539#1 ATCTTGGTGGT-TACAGCTACTTGCGTCGTCGGCGACTGTACATTCATCGCCATTGACGT 275 * *** * * *** *** * ** * * * ** * * * consensus_4539#0 GGTGGTGAACAGGCCGATTTCTTAGAACCACGATTTTGTGCAGGGTATAGTCTAAGAGA- 357 consensus_4539#1 CCTTG-GAGGAAGAAGATGAATTGTGGCCCGGATGCTTTGCACCACGTTCGTCGTGAGCT 334 * * ** * * *** ** ** *** * **** * *** consensus_4539#0 --GCTTTTAAGATGATCAATTCCTTGTCT---TCTAAGAGCATTTGG-GTTGATACCTGC 411 consensus_4539#1 TCGCTTCGCAGACGGCGACGCCGTCGACGGTGTTCATCATCATGTAGCGAGGGTGGATGC 394 **** *** * * * * * * * * * *** * * * * * *** consensus_4539#0 CTTGTGAGCTGCGATTACTCCAATGGCTTCCCAATAGTTCTGGACAT-TTAGCGCCTCTA 470 consensus_4539#1 TCTAT-AGTACTATCCATCAGCTTGGAGTTCCAGTGGTTCATGACCTCTTTGTCTGTCCT 453 * * ** * *** * *** * **** *** * ** * ** consensus_4539#0 TATTG--AACTTGTCAGGGGTATCATCAAGAACTGTTTCATTTTCTTGAACCGTAATGAT 528 consensus_4539#1 CCCCGGTAGCCTCCCAGCGATGAGGG-ACCAACGGTTGC---CGAGCAAAGCGTGCAGCT 509 * * * * *** * * * *** *** * ** *** * * consensus_4539#0 TAAGGGCTTGTTCTTTGTAGCAGTTCTAGCAAAGGCAATAGTACCATCTCCTCCGCAAGC 588 consensus_4539#1 TGAGGAGGAGCTC---GTCCTCTTCCTCGGAGAAGCTCCTCCTCTTTCTGCTCCGGCTAA 566 * *** * ** ** * ** * * * ** * *** ***** consensus_4539#0 ATCTTTTGGAAGAATCACACTATCAACATCACTAGCCACTATGCAACCATTATCCATGTT 648 consensus_4539#1 GCGGCGACGGCGGATCAC-CGGCCGGCA--AGTGCTCGGAGATGAGCCGTGGTGGAGGCT 623 * * ***** * * ** * * * * ** * * * * * consensus_4539#0 TCCATTCCTCCTCATCACATATTGAGGGGCATTGC---------TTAACCCGGCAAGCAC 699 consensus_4539#1 GCGATGACACCTGCAGACTTGCAGAGCTGCCTTGTGAGCTGCGATTACTCCAATGGCTTC 683 * ** * *** ** * *** ** *** *** ** * consensus_4539#0 ACAAGGTAGAAAGGTATGTCCAATCTCTTCA-GCAGCAGATCTTGGGGACAC-------- 750 consensus_4539#1 CCAA--TAGTTCTGGACATTTAGCGCCTCTATATTGAACTTGTCAGGGGTATCATCAAGA 741 *** *** * * * * ** * * * * * *** * consensus_4539#0 - consensus_4539#1 A 742 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||