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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4553#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1705 fasta sequence
[TTCCTTCCTTCTTCTCCTCCTCCTCCTTCTCCCAATCGATCGCATTCGAAGCTTCCTCCGGTAGCTCCGGTGAGGGTGATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTCCTCCTCGGCAGAGATCGAGACGCCTGGCCGCGCGGGGGCCGCGTTCCTCGTCGCCGCCCACTACGGGGACGTCCGCGAAATGAAGAGGATTGCAAAGGAGCTGGACGAGGACGGCAAAGGGATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGGTTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAACAAGGCCGACACTGCTCAGGGATTCACACCCCTGGAGCATG-CCGTCTACCATGGTCGCCTGCCTGCCACCAGATACCTCCTTGATCATGGCGCTGATGTGCATCAAATTCGCTCTACGGGAAATGTCTCTCTTCTTCACTCAGCTGCAGTAAAAGGGTTCTCTGAAGTAGCAAAATTTCTGCTTTCTAGAGGAGTTAATGTTGATGCAGAATCAGAAATGGGGACACCACTGGCTCTTGCTGCTTTCAGAGGATATGATAGCACTGTCAAGGTCCTTTTGGAGCACAATGCTGATCCCAACAAGGTTACAAACCAAGGCACTTGGTGCACCTTTAGACTTGGCATTAACCAGCTCTTCTGTGTCCTGTGTGAAGCTGTTGGTTCAGGCTGGAGCTGAAGTGAAAGTTGAGGGGCCAAATAATCATTTGGTAAGAGCTGCTGAGAAAGGCTTAACTGAAGCTATTAAATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGCTCGGGAGAATGCCAATAGAGCTGGCTGCTGAGTATGGCACACGGGAAGATGTTGAGATTCTCTTTCCTTTCAGCTCTGCTATTCCAACTGTGGCAAATTGGAGTGTTGATGGAATAATTAATCATGTACAGTCAGAAATCAAGCAACTAGAGGACGATAATTTTATCCAAAAGAGAAGGTCTGACATGAAACAACAAGGGGATGCTGCATTTAAGAAGCAGGATTATCTAAATGCATCAGTGTTCTACACTCAGGCACTGAAGGTTGATCCGTTTGATGGCACGTTGTTCTCAAACAGGAGTCTTTGCTGGCTCCGCATGGGTGATGGAGAAAGGGCTTTGGATGATGCCCATGCATGCGAAAAGCTACGGCCCAAAGTGGGCAAAGTCCTACTATCGGCAAGGAGCAGCTCTAATGTTTCTGAAGGAGTATGAGAGGGCTCATAGGGCACTTGGTCGAGCTTTAGAGTTGGACCCTGAAAGTGAAGAGATCGAGAATTTGTATTGGGAGTCGATGGAACTGTGCGGTTGATCCCTGAAATGCCAGCTACAGATAGAAGAAGCACACGCAGAACTGGAAGCTCCTTTTGTGTTATGAAAGATGGAACGACGCAAACGCTCAGTGATTTGCTGCTTTTTGTGTACATATACTTAGGCTGTCAAAACAGAAACAAATGTCTGGTCTTTTATGTCGTGTTTCGTCGTGACATCTTCCTGGAGTGGCTGTTAGACTAAACTAGCATTATCACATTCTATCTGTTGCTAGTATGGGCAGAGGATGATCAACTGTCTAAGCAAGCTGGAATGATATGAATTCTCTGAAATGTTATGCATAA]
[+] EMBL AK072712 [TTCCTTCCTTCTTCTCCTCCTCCTCCTTCTCCCAATCGATCGCATTCGAAGCTTCCTCCGGTAGCTCCGGTGAGGGTGATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTCCTCCTCGGCAGAGATCGAGACGCCTGGCCGCGCGGGGGCCGCGTTCCTCGTCGCCGCCCACTACGGGGACGTCCGCGAAATGAAGAGGATTGCAAAGGAGCTGGACGAGGACGGCAAAGGGATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGGTTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAACAAGGCCGACACTGCTCAGGGATTCACACCCCTGGAGCATG CCGTCTACCATGGTCGCCTGCCTGCCACCAGATACCTCCTTGATCATGGCGCTGATGTGCATCAAATTCGCTCTACGGGAAATGTCTCTCTTCTTCACTCAGCTGCAGTAAAAGGGTTCTCTGAAGTAGCAAAATTTCTGCTTTCTAGAGGAGTTAATGTTGATGCAGAATCAGAAATGGGGACACCACTGGCTCTTGCTGCTTTCAGAGGATATGATAGCACTGTCAAGGTCCTTTTGGAGCACAATGCTGATCCCAACAAGGTTACAAACCAAGGCACTTGGTGCACCTTTAGACTTGGCATTAACCAGCTCTTCTGTGTCCTGTGTGAAGCTGTTGGTTCAGGCTGGAGCTGAAGTGAAAGTTGAGGGGCCAAATAATCATTTGGTAAGAGCTGCTGAGAAAGGCTTAACTGAAGCTATTAAATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGCTCGGGAGAATGCCAATAGAGCTGGCTGCTGAGTATGGCACACGGGAAGATGTTGAGATTCTCTTTCCTTTCAGCTCTGCTATTCCAACTGTGGCAAATTGGAGTGTTGATGGAATAATTAATCATGTACAGTCAGAAATCAAGCAACTAGAGGACGATAATTTTATCCAAAAGAGAAGGTCTGACATGAAACAACAAGGGGATGCTGCATTTAAGAAGCAGGATTATCTAAATGCATCAGTGTTCTACACTCAGGCACTGAAGGTTGATCCGTTTGATGGCACGTTGTTCTCAAACAGGAGTCTTTGCTGGCTCCGCATGGGTGATGGAGAAAGGGCTTTGGATGATGCCCATGCATGCGAAAAGCTACGGCCCAAAGTGGGCAAAGTCCTACTATCGGCAAGGAGCAGCTCTAATGTTTCTGAAGGAGTATGAGAGGGCTCATAGGGCACTTGGTCGAGCTTTAGAGTTGGACCCTGAAAGTGAAGAGATCGAGAATTTGTATTGGGAGTCGATGGAACTGTGCGGTTGATCCCTGAAATGCCAGCTACAGATAGAAGAAGCACACGCAGAACTGGAAGCTCCTTTTGTGTTATGAAAGATGGAACGACGCAAACGCTCAGTGATTTGCTGCTTTTTGTGTACATATACTTAGGCTGTCAAAACAGAAACAAATGTCTGGTCTTTTATGTCGTGTTTCGTCGTGACATCTTCCTGGAGTGGCTGTTAGACTAAACTAGCATTATCACATTCTATCTGTTGCTAGTATGGGCAGAGGATGATCAACTGTCTAAGCAAGCTGGAATGATATGAATTCTCTGAAATGTTATGCATAA]
[+] EMBL C91696 [ TCGAAGCTTCCTCCGGTAGCTCCGGTGAGGGTGATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTCCTCCTCGGCAGAGATCGAGACGCCTGGCCGCGC GGGGCCGCGTTCCTCGTCGCCGCCCACTACGGGGACGTCCGCGAAATGAAGAGGATTGCAAAGGAGCTGGACGAGGACGGCAAAGGGATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGGTTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAACAAGGCCGACACTGTTCAGGGATTCACACTCCTNGAGCATGCCCGTCTACCATGGTCG CTGCCTG ]
consensusID : consensus_4553#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[AACTGAAGCTATTGGATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGGTAAGCCTTCTCCTTTGTCACACCAGTGATATCTGCTTCAGTAGTAAACGGTTTGATACTAATGTATGAGCAAATGCATACATTAGTACAGATCTTCTCATGATATTCAAGGTGTAGAATCATGTAATTTTCAGCATCATTCAACAAAACTTATCCTACTGTGCCAGAAATTTCCCAAAACTTATCTTAGGATCTAATTAGCAGTTATTCCCAGAACTTTTACATTTTAGAATGAACTGATTTCAGTATCTGACTCAGAGTTTTATCTTGTGGTGATCTAGCAGAACATAGGGTTTTATCTTGAGTAATTCTAGATTTCTATCTATAAGTTCACTAATCTTTGCCACAAGTATGGATGAACTAGATGCAAATTAATTAAAGTGTGGTTGCACATTGAATATTGGGATGATTATGTGAGTGCACACTATCATTTAGCAATGTCAATAGATTAAATTTTGAGATATTTGGATGTTGTATTGCAGTATCACTAAGTAATATCGGCAGGTTGGATTTTCAGATGATT]
[+] EMBL CB000525 [AACTGAAGCTATTGGATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGGTAAGCCTTCTCCTTTGTCACACCAGTGATATCTGCTTCAGTAGTAAACGGTTTGATACTAATGTATGAGCAAATGCATACATTAGTACAGATCTTCTCATGATATTCAAGGTGTAGAATCATGTAATTTTCAGCATCATTCAACAAAACTTATCCTACTGTGCCAGAAATTTCCCAAAACTTATCTTAGGATCTAATTAGCAGTTATTCCCAGAACTTTTACATTTTAGAATGAACTGATTTCAGTATCTGACTCAGAGTTTTATCTTGTGGTGATCTAGCAGAACATAGGGTTTTATCTTGAGTAATTCTAGATTTCTATCTATAAGTTCACTAATCTTTGCCACAAGTATGGATGAACTAGATGCAAATTAATTAAAGTGTGGTTGCACATTGAATATTGGGATGATTATGTGAGTGCACACTATCATTTAGCAATGTCAATAGATTAAATTTTGAGATATTTGGATGTTGTATTGCAGTATCACTAAGTAATATCGGCAGGTTGGATTTTCAGATGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4553#0 TTCCTTCCTTCTTCTCCTCCTCCTCCTTCTCCCAATCGATCGCATTCGAAGCTTCCTCCG 60
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 GTAGCTCCGGTGAGGGTGATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTC 120
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 CTCCTCGGCAGAGATCGAGACGCCTGGCCGCGCGGGGGCCGCGTTCCTCGTCGCCGCCCA 180
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 CTACGGGGACGTCCGCGAAATGAAGAGGATTGCAAAGGAGCTGGACGAGGACGGCAAAGG 240
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 GATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGG 300
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 TTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAA 360
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 CAAGGCCGACACTGCTCAGGGATTCACACCCCTGGAGCATGCCGTCTACCATGGTCGCCT 420
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 GCCTGCCACCAGATACCTCCTTGATCATGGCGCTGATGTGCATCAAATTCGCTCTACGGG 480
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 AAATGTCTCTCTTCTTCACTCAGCTGCAGTAAAAGGGTTCTCTGAAGTAGCAAAATTTCT 540
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 GCTTTCTAGAGGAGTTAATGTTGATGCAGAATCAGAAATGGGGACACCACTGGCTCTTGC 600
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 TGCTTTCAGAGGATATGATAGCACTGTCAAGGTCCTTTTGGAGCACAATGCTGATCCCAA 660
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 CAAGGTTACAAACCAAGGCACTTGGTGCACCTTTAGACTTGGCATTAACCAGCTCTTCTG 720
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 TGTCCTGTGTGAAGCTGTTGGTTCAGGCTGGAGCTGAAGTGAAAGTTGAGGGGCCAAATA 780
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 ATCATTTGGTAAGAGCTGCTGAGAAAGGCTTAACTGAAGCTATTAAATGCATGTTGGAAG 840
consensus_4553#1 -------------------------------AACTGAAGCTATTGGATGCATGTTGGAAG 29
************* **************
consensus_4553#0 CTGGTGCAAACCCAAATGTTCCTGACAGGCTCGGGAGAATGCCAATAGAGCTGGCTGCTG 900
consensus_4553#1 CTGGTGCAAACCCAAATGTTCCTGACAGGGT----------------AAGCCTTCTCCTT 73
***************************** * *** ** **
consensus_4553#0 AGTATGGCACACGGGAAGATGTTGAGATTCTCTTTCCTTTCAGCTCTGCTATTCCAACTG 960
consensus_4553#1 ----TGTCACACCAGT-GATATCTG---CTTCAGTAGTAAACGGTTTGATACTAATGTAT 125
** ***** * *** * ** * * * * ** ** *
consensus_4553#0 TGGCAAATTGGAGTGTTGATGGAATAATTAATCATGTACAGTCAGAAATCAAGCAACTAG 1020
consensus_4553#1 GAGCAAATGCATACATTAGTACAG-ATCTTCTCATG-ATATTCA-AGGTGTAGAATCATG 182
****** ** * * * * ***** * * *** * * ** * * *
consensus_4553#0 AGGACGATAATTTTATCCAAAAGAGAAGGTCTGACATGAAACAACAAGGGGATGCTGCAT 1080
consensus_4553#1 TAATTTTCAGCATCATTCAACAAAA----CTTATCCTACTGTGCCAGAAATTTCCCAAAA 238
* * ** *** * * * * * ** * * *
consensus_4553#0 TTAAGAAGCAGGATTATCTAAATGCATCAGTGTTCTACACTCAGGCACTGAAGGTTGATC 1140
consensus_4553#1 CTTATCTTAGGATCTAATTA---GCAGTTATTCCCAGAACTTTTACATTTTAGAATGAAC 295
* * * ** ** *** * * *** ** * ** *** *
consensus_4553#0 CGTTTGATGGCACGTTGTTCTCAAACAGGAGTCTTTGCTGGCTCCGCATGGGTGATGGAG 1200
consensus_4553#1 ----TGATTTCA----GTATCTGACTCAGAGTTTTATCTTGT--------GGTGATCTAG 339
**** ** ** * **** ** ** * ****** **
consensus_4553#0 AAAGGGCTTTGGATGATGCCCATGCATGCGAAAAGCTACGGCCCAAAGTGGGCAAAGTCC 1260
consensus_4553#1 CAGAACATAGGGTTTTATCTTGAGTAATTCTAGATTTCTATCTATAAGTTCACTAATCTT 399
* * ** * * * * * * * * **** * **
consensus_4553#0 TACTATCGGCAAGGAGCAGCTCTAATGTTTCTGAAGGAGTATGAGAGGGCTCATAGGGCA 1320
consensus_4553#1 TGCCACAAGTATGGATGAACTA-GATGCAAATTAATTAAAGTGTGGTTGCACATTGAATA 458
* * * * * *** * ** *** * ** * ** * ** *** * *
consensus_4553#0 CTTGGTCGAGCTTTAGAGTTGGACCCTGAAAGTGAAGAG-ATCGAGAATTTGTATTGGGA 1379
consensus_4553#1 TTGGGATGATTATGTGAGT-GCACACTATCATTTAGCAATGTCAATAGATTAAATTTTGA 517
* ** ** * **** * ** ** * * * * ** * * ** *** **
consensus_4553#0 GTCGATGGAAC--TGTGCGGTTGATCCCTGAAATGCCAGCTACAGATAGAAGAAGCACAC 1437
consensus_4553#1 GATATTTGGATGTTGTATTGCAGTATCACTAAGTAATATCGGCAGGTTGGATTTTCAGAT 577
* * * * *** * * * ** * * * *** * * * ** *
consensus_4553#0 GCAGAACTGGAAGCTCCTTTTGTGTTATGAAAGATGGAACGACGCAAACGCTCAGTGATT 1497
consensus_4553#1 GATT-------------------------------------------------------- 581
*
consensus_4553#0 TGCTGCTTTTTGTGTACATATACTTAGGCTGTCAAAACAGAAACAAATGTCTGGTCTTTT 1557
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 ATGTCGTGTTTCGTCGTGACATCTTCCTGGAGTGGCTGTTAGACTAAACTAGCATTATCA 1617
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 CATTCTATCTGTTGCTAGTATGGGCAGAGGATGATCAACTGTCTAAGCAAGCTGGAATGA 1677
consensus_4553#1 ------------------------------------------------------------
consensus_4553#0 TATGAATTCTCTGAAATGTTATGCATAA 1705
consensus_4553#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||