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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2118 fasta sequence
[CGTCGCTAAGAAACTCTTCCACGGCTACTTGCCTCTCTCGTCTTCCTCCCCACGCCACTCGCCACCGCGCGCGCCACTCTCTCGCGACTCCTCGCCACCGCCTTCGGACCACGAGATTCCGGCGACTTTATGGATGATGAATTCGTGGGAGTGGTACAGATCGACGGCGGCGGCGGGGACGGGGGCTGGGGCCCTGTTGGAGCAGCGGCGGGCGTCGGCGAGGTCGGCGACGGTGCCCTTCCTCCCGATGCGGTCGCGGGAGCCGGCGGAGCCGATGGAGTGGACGAGCTGCGCCAAGCAGAGGCGAGACTCCGAAAACTATGCTTGGAGTACACCGGCACGGGCAGCATGCCATGCGCCGGCTGCTATCTCCGACTCGATAAAGGAATTCCTCATAAGAAGTTTAAGCTTCTCCTCCTTAAGGGGAATGGAGCCAAGCGTCATTTCGAGACAGTGCATAAACTCGACAAGAATAAGAAAAATCGCTGCAAAAACTGCGGAAGCTACTTCCGCAGTAAAGAAGAATTGCGAGACCATAAAGACCGAATCCATCAATAAGCTCACCGAGGAGGCGCTGAGGATCTGGAAGAGCGGCTCGTACCTCCACGCCGACGAGGACGGGAGGTCCGTCTACATCGGCAGCCTCCCCCGCGCCGGCGGCGACTCGAGGCACGGAACGATGTGGGCCGTCGAGCCGCCGATCGACGCCGCGGCGCCGCTGCCGCAGTACGCGCGCCTCCGCGCCGCCTACGGCCGCTACCTCGGGACCCCCGACTCCTACGGCTCCCCGCTCCCCTTCCTCCCGGTGGACGCCGCGCAGCGCGACCGCGACAGGGTGGAGATGGACGCCATCATGTGGCAGCCCGTCGCGTGCTCCGGCTCCGACGTGGTCGGCGGTCGCGATGCCCGCGGCGTCGTCCTCCTGCGCGACAGGTACGGGCGCTACCTCCGCGGCAGCAACAATCTCCTGGCTCCCCGCCGCAGCGTCCCTGTCAAGCCCTACGTCGTGAACGAGCATATGTTTCGGTGGGAGGTGGTGCGTGTCCCCCTGAGTGAAGCCAGGCCGGAGCTCCCGATCGCCGCTCAGTCCGGCTTCGTCGCGGCGTGCTTCCCACCGCTGCTGCGAGTGATCGAGTTCGTGGGCGAAGACGACCTCGACAACATCGGCGAGGGAGAAATCTGGACTACGGTTGAGACCAGAGGGAGGTCGGTGAGGCTCCTGAAAGAGAAGATCGCGAAGCTTGTGGGCTACGAAGACTTCACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCACCCCTCTGCTCATGGATGCCAACTTCGAGGGCGAAGATACGTTGCTGTGGGAGGTGGTGCGCGTCCCCCCGAGTGGAGACATGCCGGGGCTCCCGATCGCCACTCAGCCCGGGTTCTTCGTCAGGGCGTGCTTCCCCCAGCCGCTGCGGGAGATCCAGTTCGTGGACGAAGCCGACCTCGACAACACCAGCGAGGGAGAAATCTGGACTACGGTTGAGATCAGAGGGAGGTCGGTGAGGCTCCTGAGAGAGAAGATCGCGGAGCTTGTGGGCTACGACGACTTCACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCACCCCTCTGCTCATCGACCTGCCTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGACCAACAGCGAAGCGAATGATCAGATGATATTCCCGAATCCGAATGCATTGCCGTCAGCAGAGGCCACAGATGAAGACAATGCCACGATTGAGTGAATCCTTTTGTGCTGAAGTTCTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTATAGGGTGGAATTTTCAGTTCAGCCGATGCTGCAATGCAGTTTTATGTTTGCTATCAGCTGTAGAATGGCTGAAAACTCTGAAATTTTCAGTGTGTTCAATGGGTGTTTTTCGACGGTTTCACATACTTCGGAAACCGGTAAAACAGGGCCTTCTAAGGAAAATATTGGTTTTGGTGACAATTAGTATTCATGCCTAGTATGGATTGACGCCAAAAATGTGCTTATTCCTGAAGTATATTAGTGTTCATGCTAAACTTGGTAGAAATATGCATGATGTCTCTG]
[+] EMBL AK106838 [CGTCGCTAAGAAACTCTTCCACGGCTACTTGCCTCTCTCGTCTTCCTCCCCACGCCACTCGCCACCGCGCGCGCCACTCTCTCGCGACTCCTCGCCACCGCCTTCGGACCACGAGATTCCGGCGACTTTATGGATGATGAATTCGTGGGAGTGGTACAGATCGACGGCGGCGGCGGGGACGGGGGCTGGGGCCCTGTTGGAGCAGCGGCGGGCGTCGGCGAGGTCGGCGACGGTGCCCTTCCTCCCGATGCGGTCGCGGGAGCCGGCGGAGCCGATGGAGTGGACGAGCTGCGCCAAGCAGAGGCGAGACTCCGAAAACTATGCTTGGAGTACACCGGCACGGGCAGCATGCCATGCGCCGGCTGCTATCTCCGACTCGATAAAGGAATTCCTCATAAGAAGTTTAAGCTTCTCCTCCTTAAGGGGAATGGAGCCAAGCGTCATTTCGAGACAGTGCATAAACTCGACAAGAATAAGAAAAATCGCTGCAAAAACTGCGGAAGCTACTTCCGCAGTAAAGAAGAATTGCGAGACCATAAAGACCGAATCCATCAATAAGCTCACCGAGGAGGCGCTGAGGATCTGGAAGAGCGGCTCGTACCTCCACGCCGACGAGGACGGGAGGTCCGTCTACATCGGCAGCCTCCCCCGCGCCGGCGGCGACTCGAGGCACGGAACGATGTGGGCCGTCGAGCCGCCGATCGACGCCGCGGCGCCGCTGCCGCAGTACGCGCGCCTCCGCGCCGCCTACGGCCGCTACCTCGGGACCCCCGACTCCTACGGCTCCCCGCTCCCCTTCCTCCCGGTGGACGCCGCGCAGCGCGACCGCGACAGGGTGGAGATGGACGCCATCATGTGGCAGCCCGTCGCGTGCTCCGGCTCCGACGTGGTCGGCGGTCGCGATGCCCGCGGCGTCGTCCTCCTGCGCGACAGGTACGGGCGCTACCTCCGCGGCAGCAACAATCTCCTGGCTCCCCGCCGCAGCGTCCCTGTCAAGCCCTACGTCGTGAACGAGCATATGTTTCGGTGGGAGGTGGTGCGTGTCCCCCTGAGTGAAGCCAGGCCGGAGCTCCCGATCGCCGCTCAGTCCGGCTTCGTCGCGGCGTGCTTCCCACCGCTGCTGCGAGTGATCGAGTTCGTGGGCGAAGACGACCTCGACAACATCGGCGAGGGAGAAATCTGGACTACGGTTGAGACCAGAGGGAGGTCGGTGAGGCTCCTGAAAGAGAAGATCGCGAAGCTTGTGGGCTACGAAGACTTCACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCACCCCTCTGCTCATGGATGCCAACTTCGAGGGCGAAGATACGTTGCTGTGGGAGGTGGTGCGCGTCCCCCCGAGTGGAGACATGCCGGGGCTCCCGATCGCCACTCAGCCCGGGTTCTTCGTCAGGGCGTGCTTCCCCCAGCCGCTGCGGGAGATCCAGTTCGTGGACGAAGCCGACCTCGACAACACCAGCGAGGGAGAAATCTGGACTACGGTTGAGATCAGAGGGAGGTCGGTGAGGCTCCTGAGAGAGAAGATCGCGGAGCTTGTGGGCTACGACGACTTCACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCACCCCTCTGCTCATCGACCTGCCTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGACCAACAGCGAAGCGAATGATCAGATGATATTCCCGAATCCGAATGCATTGCCGTCAGCAGAGGCCACAGATGAAGACAATGCCACGATTGAGTGAATCCTTTTGTGCTGAAGTTCTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTATAGGGTGGAATTTTCAGTTCAGCCGATGCTGCAATGCAGTTTTATGTTTGCTATCAGCTGTAGAATGGCTGAAAACTCTGAAATTTTCAGTGTGTTCAATGGGTGTTTTTCGACGGTTTCACATACTTCGGAAACCGGTAAAACAGGGCCTTCTAAGGAAAATATTGGTTTTGGTGACAATTAGTATTCATGCCTAGTATGGATTGACGCCAAAAATGTGCTTATTCCTGAAGTATATTAGTGTTCATGCTAAACTTGGTAGAAATATGCATGATGTCTCTG]
consensusID : consensus_4558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence
[CCGCCATGGGCAGTTCACCCCTTTGCTCATCGACCTGCGTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGACCAACAGCGAAGCGGATAATCAGTTGATATTCCCCAATGTCAGTGAAATTGCTGTCAAATGGATCAAGGCGAACCAAGATTGATTTAGTGAATCCTTTTGTGCTGAAGTTTTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTTAGAGACATATTGAGTGAAATTTTTAGTTCAGCCGATTTTGGAATACAGTTTCATGTTTGCTCAGCTGTAGAGTGGCTGAAAAATCTCAAATTGTCAGGGTGTTCAATGGGTGTATTACCCCGGTTTACGTACTTTGTGAACAGGGTTTTTTGACGAAAATATTGGTCATGGTG-ACAATTAGTATTCATTCCTAGTATGGATTGATGGCAAGAATGTGCTTAACTACTGAAATATATACTGTTCAAGATAAGTGAACTTTGACGAGTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCCCTC]
[-] EMBL CF326650 [CCGCCATGGGCAGTTCACCCCTTTGCTCATCGACCTGCGTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGACCAACAGCGAAGCGGATAATCAGTTGATATTCCCCAATGTCAGTGAAATTGCTGTCAAATGGATCAAGGCGAACCAAGATTGATTTAGTGAATCCTTTTGTGCTGAAGTTTTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTTAGAGACATATTGAGTGAAATTTTTAGTTCAGCCGATTTTGGAATACAGTTTCATGTTTGCTCAGCTGTAGAGTGGCTGAAAAATCTCAAATTGTCAGGGTGTTCAATGGGTGTATTACCCCGGTTTACGTACTTTGTGAACAGGGTTTTTTGACGAAAATATTGGTCATGGTG ACAATTAGTATTCATTCCTAGTATGGATTGATGGCAAGAATGTGCTTAACTACTGAAATATATACTGTTCAAGATAAGTGAACTTTGACGAGTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCC ]
[-] EMBL CF325778 [ CCCTGAACATCGTCCTCCTCAGGACCAACAGCGAAGCGGATAATCAGTTGATATTCCCAAATGTCAGTGAAATTGCTGTCAAATGGATCAAGGCGAACCAAGATTGATTTAGTGAATCCTTTTGTGCTGAAGTTTTGACAGGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTTAGAGACATATTGAGTGAAATTTTTAGTTCAGCCGATTTTGGAATACAGTTTCATGTTTGCTCAGCTGTAGAGTGGCTGAAAAATCTCAAATTGTCAGGGTGTTCAATGGGTGTATTACCCCGGTTTACGTAAATTATGAACAGGGTTTTCTGACGAAAATATTGGTCATGGTGAACCATT GAATTCATTCCTAGTATGGATTGATGGCAAGAATGTGCTTAACTACTGAAATATATACTGTTCAAGATAAGTGAACTTTGACGAGTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCTCCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4558#0 CGTCGCTAAGAAACTCTTCCACGGCTACTTGCCTCTCTCGTCTTCCTCCCCACGCCACTC 60
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GCCACCGCGCGCGCCACTCTCTCGCGACTCCTCGCCACCGCCTTCGGACCACGAGATTCC 120
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GGCGACTTTATGGATGATGAATTCGTGGGAGTGGTACAGATCGACGGCGGCGGCGGGGAC 180
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GGGGGCTGGGGCCCTGTTGGAGCAGCGGCGGGCGTCGGCGAGGTCGGCGACGGTGCCCTT 240
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 CCTCCCGATGCGGTCGCGGGAGCCGGCGGAGCCGATGGAGTGGACGAGCTGCGCCAAGCA 300
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GAGGCGAGACTCCGAAAACTATGCTTGGAGTACACCGGCACGGGCAGCATGCCATGCGCC 360
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GGCTGCTATCTCCGACTCGATAAAGGAATTCCTCATAAGAAGTTTAAGCTTCTCCTCCTT 420
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 AAGGGGAATGGAGCCAAGCGTCATTTCGAGACAGTGCATAAACTCGACAAGAATAAGAAA 480
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 AATCGCTGCAAAAACTGCGGAAGCTACTTCCGCAGTAAAGAAGAATTGCGAGACCATAAA 540
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GACCGAATCCATCAATAAGCTCACCGAGGAGGCGCTGAGGATCTGGAAGAGCGGCTCGTA 600
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 CCTCCACGCCGACGAGGACGGGAGGTCCGTCTACATCGGCAGCCTCCCCCGCGCCGGCGG 660
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 CGACTCGAGGCACGGAACGATGTGGGCCGTCGAGCCGCCGATCGACGCCGCGGCGCCGCT 720
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GCCGCAGTACGCGCGCCTCCGCGCCGCCTACGGCCGCTACCTCGGGACCCCCGACTCCTA 780
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 CGGCTCCCCGCTCCCCTTCCTCCCGGTGGACGCCGCGCAGCGCGACCGCGACAGGGTGGA 840
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GATGGACGCCATCATGTGGCAGCCCGTCGCGTGCTCCGGCTCCGACGTGGTCGGCGGTCG 900
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 CGATGCCCGCGGCGTCGTCCTCCTGCGCGACAGGTACGGGCGCTACCTCCGCGGCAGCAA 960
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 CAATCTCCTGGCTCCCCGCCGCAGCGTCCCTGTCAAGCCCTACGTCGTGAACGAGCATAT 1020
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GTTTCGGTGGGAGGTGGTGCGTGTCCCCCTGAGTGAAGCCAGGCCGGAGCTCCCGATCGC 1080
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 CGCTCAGTCCGGCTTCGTCGCGGCGTGCTTCCCACCGCTGCTGCGAGTGATCGAGTTCGT 1140
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GGGCGAAGACGACCTCGACAACATCGGCGAGGGAGAAATCTGGACTACGGTTGAGACCAG 1200
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 AGGGAGGTCGGTGAGGCTCCTGAAAGAGAAGATCGCGAAGCTTGTGGGCTACGAAGACTT 1260
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 CACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCACCCCTCTGCTCATGGATGCCAA 1320
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 CTTCGAGGGCGAAGATACGTTGCTGTGGGAGGTGGTGCGCGTCCCCCCGAGTGGAGACAT 1380
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GCCGGGGCTCCCGATCGCCACTCAGCCCGGGTTCTTCGTCAGGGCGTGCTTCCCCCAGCC 1440
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GCTGCGGGAGATCCAGTTCGTGGACGAAGCCGACCTCGACAACACCAGCGAGGGAGAAAT 1500
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 CTGGACTACGGTTGAGATCAGAGGGAGGTCGGTGAGGCTCCTGAGAGAGAAGATCGCGGA 1560
consensus_4558#1 ------------------------------------------------------------
consensus_4558#0 GCTTGTGGGCTACGACGACTTCACGATGTGCGTCAGCGCCGGCCGCCATGGGCAGTTCAC 1620
consensus_4558#1 ------------------------------------------CCGCCATGGGCAGTTCAC 18
******************
consensus_4558#0 CCCTCTGCTCATCGACCTGCCTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGAC 1680
consensus_4558#1 CCCTTTGCTCATCGACCTGCGTCGCAGCCGGGAGACCCTGAACATCGTCCTCCTCAGGAC 78
**** *************** ***************************************
consensus_4558#0 CAACAGCGAAGCGAATGATCAGATGATATTCCCGAATCCGAATGCA-TTGCCGTCAGCAG 1739
consensus_4558#1 CAACAGCGAAGCGGATAATCAGTTGATATTCCCCAATGTCAGTGAAATTGCTGTCAA-AT 137
************* ** ***** ********** *** * ** * **** **** *
consensus_4558#0 AGGCCACAGATGAAGACAATGCCACGATTGAGTGAATCCTTTTGTGCTGAAGTTCTGACA 1799
consensus_4558#1 GGATCA-AGGCGAAC-CAAGAT--TGATTTAGTGAATCCTTTTGTGCTGAAGTTTTGACA 193
* ** ** *** *** **** ************************ *****
consensus_4558#0 GGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGT---------ATAGGGTGGAATTTT 1850
consensus_4558#1 GGCTCAGGGAACTCGACAGAAGATTAGTGTGTTGGTTAGAGACATATTGAGTGAAATTTT 253
************************************ ** * *** ******
consensus_4558#0 CAGTTCAGCCGATGCTGCAATGCAGTTTTATGTTTGCTATCAGCTGTAGAATGGCTGAAA 1910
consensus_4558#1 TAGTTCAGCCGATTTTGGAATACAGTTTCATGTTTGCT--CAGCTGTAGAGTGGCTGAAA 311
************ ** *** ****** ********* ********** *********
consensus_4558#0 ACTCTGAAATTTTCAGTGTGTTCAATGGGTGTTTTTCGACGGTTTCACATACTTCGGAAA 1970
consensus_4558#1 AATCTCAAATTGTCAGGGTGTTCAATGGGTGTATTACCCCGGTTT-ACGTACTTTGTGAA 370
* *** ***** **** *************** ** * ****** ** ***** * **
consensus_4558#0 CCGGTAAAACAGGGCCTTCTAAGGAAAATATTGGTTTTGGTGACAATTAGTATTCATGCC 2030
consensus_4558#1 C---------AGGGTTTTTTGACGAAAATATTGGTCATGGTGACAATTAGTATTCATTCC 421
* **** ** * * ************ ******************** **
consensus_4558#0 TAGTATGGATTGACGCCAAAAATGTGCTTA-TTCCTGAAGTATATTAGTGTTCATGCTAA 2089
consensus_4558#1 TAGTATGGATTGATGGCAAGAATGTGCTTAACTACTGAAATATAT-ACTGTTCAAGATAA 480
************* * *** ********** * ***** ***** * ****** * ***
consensus_4558#0 ACTTGGTAGAAATATGCATGATGTCTCTG------------------------------- 2118
consensus_4558#1 GT------GAACTTTGACGAGTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 534
*** * ** *** *
consensus_4558#0 ----------------------
consensus_4558#1 CTCGAGACTAGTTCTCTCCCTC 556
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||