cluster # 456

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Oryza sativa
cluster # 456 cluster # 456 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_456#0 length = 407 sequences # 1

consensus_456#1 length = 398 sequences # 1

consensusID : consensus_456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence

                              [GCATGCGGCAAATAAATCANTCNCAACCGCTACAGGCCCCATGACATGGCCCCTTTGTCCTCGTCATCGGTCTTTTATTCCTTCGACCACACAAGCTTCCCCTCATTCCTACGACTTTGAACCTGGCCCCCCATGGTCTTGACTCTGCAACCCTCGCAAGATCAATCAAGATGAACAACCCCCGGCTAAGCTAGGGAATCTTGAGCGGGGCAACATTGGGGGAAGTGTTTTTCCCAACTTTGTAATGACATGAGCTACGCATTTCTAAAGGGACCCGGTACGGAAGGAATCGGTTGCAGAGATATCACAGGCGGAACAGGACGGCAGATTATGAATTTCTAGAAATAGAGACGCAAATCTGAGCTCGAATTGAGCCTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003493             [GCATGCGGCAAATAAATCANTCNCAACCGCTACAGGCCCCATGACATGGCCCCTTTGTCCTCGTCATCGGTCTTTTATTCCTTCGACCACACAAGCTTCCCCTCATTCCTACGACTTTGAACCTGGCCCCCCATGGTCTTGACTCTGCAACCCTCGCAAGATCAATCAAGATGAACAACCCCCGGCTAAGCTAGGGAATCTTGAGCGGGGCAACATTGGGGGAAGTGTTTTTCCCAACTTTGTAATGACATGAGCTACGCATTTCTAAAGGGACCCGGTACGGAAGGAATCGGTTGCAGAGATATCACAGGCGGAACAGGACGGCAGATTATGAATTTCTAGAAATAGAGACGCAAATCTGAGCTCGAATTGAGCCTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_456#0
GCATGCGGCAAATAAATCANTCNCAACCGCTACAGGCCCCATGACATGGCCCCTTTGTCC
TCGTCATCGGTCTTTTATTCCTTCGACCACACAAGCTTCCCCTCATTCCTACGACTTTGA
ACCTGGCCCCCCATGGTCTTGACTCTGCAACCCTCGCAAGATCAATCAAGATGAACAACC
CCCGGCTAAGCTAGGGAATCTTGAGCGGGGCAACATTGGGGGAAGTGTTTTTCCCAACTT
TGTAATGACATGAGCTACGCATTTCTAAAGGGACCCGGTACGGAAGGAATCGGTTGCAGA
GATATCACAGGCGGAACAGGACGGCAGATTATGAATTTCTAGAAATAGAGACGCAAATCT
GAGCTCGAATTGAGCCTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [TCANTCNCAACCCGGNTNCAGGNCCCCCATGACATGGCCCCTTTGTCCTCGTCATCGGTNTTTTATTCCTTNGACCNCNCAAGCTTCCCCTCATTCCTACGACTTTGAACCTGGCCCCCCATGGTTTTGACTTTGCAACNCTCGCAAGATCAATCAANATGAACNNCCCCCGGNTAAGNTAGGGAATNTTGAGCGGGGCANCATTGGGGGAAGTGTTTTTCCCNNCTTTGTAATGACATNAGCTACGCATTTTTAAAGGGACCCGGTACGGAAGGAATCGGTTGCANAGATNTCNCAGGCGGAACAGGNCGGCAGATTNTGAATTTNTANAAATANAGACNCAAATTTGAGCTCGAATTGAGCNTTNCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AT003599             [TCANTCNCAACCCGGNTNCAGGNCCCCCATGACATGGCCCCTTTGTCCTCGTCATCGGTNTTTTATTCCTTNGACCNCNCAAGCTTCCCCTCATTCCTACGACTTTGAACCTGGCCCCCCATGGTTTTGACTTTGCAACNCTCGCAAGATCAATCAANATGAACNNCCCCCGGNTAAGNTAGGGAATNTTGAGCGGGGCANCATTGGGGGAAGTGTTTTTCCCNNCTTTGTAATGACATNAGCTACGCATTTTTAAAGGGACCCGGTACGGAAGGAATCGGTTGCANAGATNTCNCAGGCGGAACAGGNCGGCAGATTNTGAATTTNTANAAATANAGACNCAAATTTGAGCTCGAATTGAGCNTTNCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_456#1
TCANTCNCAACCCGGNTNCAGGNCCCCCATGACATGGCCCCTTTGTCCTCGTCATCGGTN
TTTTATTCCTTNGACCNCNCAAGCTTCCCCTCATTCCTACGACTTTGAACCTGGCCCCCC
ATGGTTTTGACTTTGCAACNCTCGCAAGATCAATCAANATGAACNNCCCCCGGNTAAGNT
AGGGAATNTTGAGCGGGGCANCATTGGGGGAAGTGTTTTTCCCNNCTTTGTAATGACATN
AGCTACGCATTTTTAAAGGGACCCGGTACGGAAGGAATCGGTTGCANAGATNTCNCAGGC
GGAACAGGNCGGCAGATTNTGAATTTNTANAAATANAGACNCAAATTTGAGCTCGAATTG
AGCNTTNCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_456#0      GCATGCGGCAAATAAATCANTCNCAACC--GCTACAGGCCCC--ATGACATGGCCCCTTT 56
consensus_456#1      ----------------TCANTCNCAACCCGGNTNCAGGNCCCCCATGACATGGCCCCTTT 44
                                     ************  * * **** ***  ****************

consensus_456#0      GTCCTCGTCATCGGTCTTTTATTCCTTCGACCACACAAGCTTCCCCTCATTCCTACGACT 116
consensus_456#1      GTCCTCGTCATCGGTNTTTTATTCCTTNGACCNCNCAAGCTTCCCCTCATTCCTACGACT 104
                     *************** *********** **** * *************************

consensus_456#0      TTGAACCTGGCCCCCCATGGTCTTGACTCTGCAACCCTCGCAAGATCAATCAAGATGAAC 176
consensus_456#1      TTGAACCTGGCCCCCCATGGTTTTGACTTTGCAACNCTCGCAAGATCAATCAANATGAAC 164
                     ********************* ****** ****** ***************** ******

consensus_456#0      AACCCCCGGCTAAGCTAGGGAATCTTGAGCGGGGCAACATTGGGGGAAGTGTTTTTCCCA 236
consensus_456#1      NNCCCCCGGNTAAGNTAGGGAATNTTGAGCGGGGCANCATTGGGGGAAGTGTTTTTCCCN 224
                       ******* **** ******** ************ ********************** 

consensus_456#0      ACTTTGTAATGACATGAGCTACGCATTTCTAAAGGGACCCGGTACGGAAGGAATCGGTTG 296
consensus_456#1      NCTTTGTAATGACATNAGCTACGCATTTTTAAAGGGACCCGGTACGGAAGGAATCGGTTG 284
                      ************** ************ *******************************

consensus_456#0      CAGAGATATCACAGGCGGAACAGGACGGCAGATTATGAATTTCTAGAAATAGAGACGCAA 356
consensus_456#1      CANAGATNTCNCAGGCGGAACAGGNCGGCAGATTNTGAATTTNTANAAATANAGACNCAA 344
                     ** **** ** ************* ********* ******* ** ***** **** ***

consensus_456#0      ATCTGAGCTCGAATTGAGCCTTCCNAAAAAAAAAAAAAAAAAAAAAAAAAA--- 407
consensus_456#1      ATTTGAGCTCGAATTGAGCNTTNCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 398
                     ** **************** ** ****************************