cluster # 4573

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Oryza sativa
cluster # 4573 cluster # 4573 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4573#0 length = 509 sequences # 2

consensus_4573#1 length = 466 sequences # 1

consensusID : consensus_4573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 509
fasta sequence

                              [TACATCAAGAAGCGGCGGCGCGCGGAGCGGAGCGCGGAGGATGCGCCCGGCGTGCAAGGTTTCGCCAAGAAGGGTTCGTGGGACCTCCAAGTCGTTCCAGGGTCCCTGGCGTTCGACCGAGCCACCGAGGTGATCGACCGGTGTCCGCGACGAGAACCTCATCGGCCAGCCGGCCGGGTCCCGGGAACCGTGTACCCGCGTGAAGCTCGGGAGCCGGCGCGGTGTTCCCGGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCGGCGGCGAGGAGCACCGGCGGCGTCGGCCGCCATGCTCCGTTCGCCGTCGGCGGCGCGGCGCACGGCGTCGGTGCGGTGCCGCGAGTTCGACTCGGAGGTGGGGACGCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCGCGGCGAGCCTGCTGGTGTACGAGCACCTCCCCAATGGCAGCCTCTACGAGCGCCTGCACGAGGGGCAAAAGCT]

[+] EMBL BI810737             [TACATCAAGAAGCGGCGGCGCGCGGAGCGGAGCGCGGAGGATGCGCCCGGCGTGCAAGGTTTCGCCAAGAAGGGTTCGTGGGACCTCCAAGTCGTTCCAGGGTCCCTGGCGTTCGACCGAGCCACCGAGGTGATCGACCGGTGTCCGCGACGAGAACCTCATCGGCCAGCCGGCCGGGTCCCGGGAACCGTGTACCCGCGTGAAGCTCGGGAGCCGGCGCGGTGTTCCCGGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCGGCGGCGAGGAGCACCGGCGGCGTCGGCCGCCATGCTCCGTTCGCCGTCGGCGGCGCGGCGCACGGCGTCGGTGCGGTGCCGCGAGTTCGACTCGGAGGTGGGGACGCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCGCGGCGAGCCTGCTGGTGTACGAGCACCTCCCCAATGGCAGCCTCTACGAGCGCCTGCACGAGGGGCA      ]
[+] EMBL C22618               [                                                                                                                                                                                                                                                                                             GCGTCGGCCGCCATGCTCCGTTC CNTTCGGCGGCGCGGCGCACGGCNTCGGTGCGGTGCCGCGAGTTCGACTCGGAGGTGGGGACGCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCGCGGCGAGCCTGCTGGTGTACGAGCACCTCCCCAATGGCAG CTCTACGAGCGCCTGCACGAGGGGCAAAAGCT]




>consensus_4573#0
TACATCAAGAAGCGGCGGCGCGCGGAGCGGAGCGCGGAGGATGCGCCCGGCGTGCAAGGT
TTCGCCAAGAAGGGTTCGTGGGACCTCCAAGTCGTTCCAGGGTCCCTGGCGTTCGACCGA
GCCACCGAGGTGATCGACCGGTGTCCGCGACGAGAACCTCATCGGCCAGCCGGCCGGGTC
CCGGGAACCGTGTACCCGCGTGAAGCTCGGGAGCCGGCGCGGTGTTCCCGGTGAAGCACA
TCACCCGGACACGCGCGGCGGCGGCGGCGGCGAGGAGCACCGGCGGCGTCGGCCGCCATG
CTCCGTTCGCCGTCGGCGGCGCGGCGCACGGCGTCGGTGCGGTGCCGCGAGTTCGACTCG
GAGGTGGGGACGCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATC
ACCAGCGACGACGGCGCGGCGAGCCTGCTGGTGTACGAGCACCTCCCCAATGGCAGCCTC
TACGAGCGCCTGCACGAGGGGCAAAAGCT

consensusID : consensus_4573#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [TAGTGCTCCGGCGCTCGGCCGGTGATGTACATCAAGAAGCGCGGCGCGCGGAGGCGGAGCGGAGGAGCGCCGCCNCGGCAAGGTGTTCGGCAAGAAGGGTCGTGGGACCTCAAGTCGTTCAGGGTCCTGGCGTTCGACGAGCACGAGGTGATCGACGGTGTCCGCGACGAGAACCTCATCGGCAGCGGCGGGTCCGGGAACGTGTACCGCGTGAAGCTCGGGAGCGGCGCGGTGGTCCGGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCGCGGCGAGGAGCACGCGGCGTCGCCGCCATGCTCCGTTCCCGTCGCCNCCGGCGCACGGCGTCGGTGCGGTCCGCGAGTTCGACTCGGAGGTGGGGACCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCCGGCGAGCTGCTGGTGTACGACCACCCCCCC]

[-] EMBL BU667035             [TAGTGCTCCGGCGCTCGGCCGGTGATGTACATCAAGAAGCGCGGCGCGCGGAGGCGGAGCGGAGGAGCGCCGCCNCGGCAAGGTGTTCGGCAAGAAGGGTCGTGGGACCTCAAGTCGTTCAGGGTCCTGGCGTTCGACGAGCACGAGGTGATCGACGGTGTCCGCGACGAGAACCTCATCGGCAGCGGCGGGTCCGGGAACGTGTACCGCGTGAAGCTCGGGAGCGGCGCGGTGGTCCGGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCGCGGCGAGGAGCACGCGGCGTCGCCGCCATGCTCCGTTCCCGTCGCCNCCGGCGCACGGCGTCGGTGCGGTCCGCGAGTTCGACTCGGAGGTGGGGACCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCCGGCGAGCTGCTGGTGTACGACCACCCCCCC]




>consensus_4573#1
TAGTGCTCCGGCGCTCGGCCGGTGATGTACATCAAGAAGCGCGGCGCGCGGAGGCGGAGC
GGAGGAGCGCCGCCNCGGCAAGGTGTTCGGCAAGAAGGGTCGTGGGACCTCAAGTCGTTC
AGGGTCCTGGCGTTCGACGAGCACGAGGTGATCGACGGTGTCCGCGACGAGAACCTCATC
GGCAGCGGCGGGTCCGGGAACGTGTACCGCGTGAAGCTCGGGAGCGGCGCGGTGGTCCGG
TGAAGCACATCACCCGGACACGCGCGGCGGCGGCGCGGCGAGGAGCACGCGGCGTCGCCG
CCATGCTCCGTTCCCGTCGCCNCCGGCGCACGGCGTCGGTGCGGTCCGCGAGTTCGACTC
GGAGGTGGGGACCTGAGCTCGATCCGGCACGTGAACGTGGTGAAGCTCCTGTGCAGCATC
ACCAGCGACGACGGCCGGCGAGCTGCTGGTGTACGACCACCCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4573#0      ---------------------------TACATCAAGAAGCGGCGGCGCGCGGAGCGGAGC 33
consensus_4573#1      TAGTGCTCCGGCGCTCGGCCGGTGATGTACATCAAGAAGCG-CGGCGCGCGGAG-GCGGA 58
                                                 ************** ************ *  * 

consensus_4573#0      GCGGAGGATGCGCCCGGCGTGCAAGGT-TTCGCCAAGAAGGGTTCGTGGGACCTCCAAGT 92
consensus_4573#1      GCGGAGGA-GCGCCGCCNCGGCAAGGTGTTCGGCAAGAAGGGT-CGTGGGACCTC-AAGT 115
                      ******** *****      ******* **** ********** *********** ****

consensus_4573#0      CGTTCCAGGGTCCCTGGCGTTCGACCGAGCCACCGAGGTGATCGACCGGTGTCCGCGACG 152
consensus_4573#1      CGTTC-AGGGTCC-TGGCGTTCGAC-GAGCA--CGAGGTGATCGAC-GGTGTCCGCGACG 169
                      ***** ******* *********** ****   ************* *************

consensus_4573#0      AGAACCTCATCGGCCAGCCGGCCGGGTCCCGGGAACCGTGTACCCGCGTGAAGCTCGGGA 212
consensus_4573#1      AGAACCTCATCGGC-AGCGG--CGGGTCCGGGAA--CGTGTACC-GCGTGAAGCTCGGGA 223
                      ************** *** *  ******* ** *  ******** ***************

consensus_4573#0      GCCGGCGCGGTGTTCCCGGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCGGCGGCG 272
consensus_4573#1      GC-GGCGCGGTGGTCC-GGTGAAGCACATCACCCGGACACGCGCGGCGGCGGCG-CGGCG 280
                      ** ********* *** ************************************* *****

consensus_4573#0      AGGAGCACCGGCGGCGTCGGCCGCCATGCTCCGTTCGCCGTCGGCGGCGCGGCGCACGGC 332
consensus_4573#1      AGGAGCAC--GCGGCGTCG-CCGCCATGCTCCGTTC-CCGTCGCCNCCG--GCGCACGGC 334
                      ********  ********* **************** ****** *  **  *********

consensus_4573#0      GTCGGTGCGGTGCCGCGAGTTCGACTCGGAGGTGGGGACGCTGAGCTCGATCCGGCACGT 392
consensus_4573#1      GTCGGTGCGGT-CCGCGAGTTCGACTCGGAGGTGGGGAC-CTGAGCTCGATCCGGCACGT 392
                      *********** *************************** ********************

consensus_4573#0      GAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGCGCGGCGAGCCTGCTGGT 452
consensus_4573#1      GAACGTGGTGAAGCTCCTGTGCAGCATCACCAGCGACGACGGC-CGGCGAGC-TGCTGGT 450
                      ******************************************* ******** *******

consensus_4573#0      GTACGAGCACCTCCCCAATGGCAGCCTCTACGAGCGCCTGCACGAGGGGCAAAAGCT 509
consensus_4573#1      GTACGACCACCCCCCC----------------------------------------- 466
                      ****** **** ****