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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1370 fasta sequence
[CGGCGACGGCGGAGGCGACGAGGCCGAAGCCGCCGGCGGTCTGGCCGGCGATGGAAGGGGGGGGGGGGACCCGCCGGCCGTAGGCGCGATGGGTCGGCCGCCCAGATCCTCTCCACCGTGAAGATCTCCCCATCTTATCCTCGGCGATCTGCGTTTCCCTTGCTCGGAAAGGCGACCCAGAATCAGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTCAAAGCGAGCAATATTCTGCTTGATGATGATTTCAACCCCAAGATATCTGACTTTGGTATGGCTAGAATATTTGGTGAACACCAACTTCAAGCCCTTACCCACCGAATTGTTGGAACCTATGGCTACATCTCTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCGTGTTGATCCTAGAGATTGTGAGCGGACGAAGGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTACGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTGGTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGATGCTCAGTGGGGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGGTTCCTCTGGATGATAACAATACTGGATCGGGGAATCAGTTGACGTATACTCAATTGCAAGGCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAACTTGCC-AACCTGGATTACTGAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTATTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGAATTGGAATGCCGTTTGTTTATACATCTGGGTATCAGGGTATGCAACACCAGGAAA]
[+] EMBL AK071656 [CGGCGACGGCGGAGGCGACGAGGCCGAAGCCGCCGGCGGTCTGGCCGGCGATGGAAGGGGGGGGGGGGACCCGCCGGCCGTAGGCGCGATGGGTCGGCCGCCCAGATCCTCTCCACCGTGAAGATCTCCCCATCTTATCCTCGGCGATCTGCGTTTCCCTTGCTCGGAAAGGCGACCCAGAATCAGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTCAAAGCGAGCAATATTCTGCTTGATGATGATTTCAACCCCAAGATATCTGACTTTGGTATGGCTAGAATATTTGGTGAACACCAACTTCAAGCCCTTACCCACCGAATTGTTGGAACCTATGGCTACATCTCTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCGTGTTGATCCTAGAGATTGTGAGCGGACGAAGGAACAGCTCATTTGTTGATGAAGAATGGTCAATGAATCTCTTGGGTTACGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGATCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTGGTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGATGCTCAGTGGGGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGGTTCCTCTGGATGATAACAATACTGGATCGGGGAATCAGTTGACGTATACTCAATTGCAAGGCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAACTTGCC AACCTGGATTACTGAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTATTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGAATTGGAATGCCGTTTGTTTATACATCTGGGTATCAGGGTATGCAACACCAGGAAA]
[+] EMBL BI813089 [ TTGCCAAACCTGGATTACTGAA TTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTATTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGCACTGGAATGCCGTTTGTTTATAaaaa ]
consensusID : consensus_4574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence
[AGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGATAGTTCTATCCAAACTGCAACACCGGAATTTGGTTAGGCTCTTTGGTTGTTGTGTTCATGGAGAAGAGAAGATGTTGCTGTATGAATACATGCCCAACAAGAGCCTTGACTCATTTATTTTTGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTC]
[+] EMBL BP184664 [AGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGACCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCACCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGTGGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTCAAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGATAGTTCTATCCAAACTGCAACACCGGAATTTGGTTAGGCTCTTTGGTTGTTGTGTTCATGGAGAAGAGAAGATGTTGCTGTATGAATACATGCCCAACAAGAGCCTTGACTCATTTATTTTTGATGAAAGTAAGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4574#0 CGGCGACGGCGGAGGCGACGAGGCCGAAGCCGCCGGCGGTCTGGCCGGCGATGGAAGGGG 60
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 GGGGGGGGACCCGCCGGCCGTAGGCGCGATGGGTCGGCCGCCCAGATCCTCTCCACCGTG 120
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 AAGATCTCCCCATCTTATCCTCGGCGATCTGCGTTTCCCTTGCTCGGAAAGGCGACCCAG 180
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 AATCAGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGA 240
consensus_4574#1 ----AGTAACTACGCATAAGGAGAATACAAGCACCACGGCTGATCACAAAAGAAGCTGGA 56
********************************************************
consensus_4574#0 CCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCA 300
consensus_4574#1 CCACCTGCAGATGAAGCTATATTCAGAAGTGATTCAGTGAAATCCGCAGTTCTAAGCTCA 116
************************************************************
consensus_4574#0 CCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGT 360
consensus_4574#1 CCACTAGTTGAGTTTAGCACGATTTATTCAGCAACAAATAATTTTAGCAACAAGCTTGGT 176
************************************************************
consensus_4574#0 GGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTC 420
consensus_4574#1 GGAGGCGGATTTGGTTTTGTTTACAAGGGGGTACTACCTGATGGCCAGGAGATTGCTGTC 236
************************************************************
consensus_4574#0 AAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGATGAAAGTA 480
consensus_4574#1 AAGAGGCTGTCAAACAGATCCAGTCAGGGATTGGAAGAGTTCAAGAACGAGGTGA----- 291
*************************************************** ***
consensus_4574#0 AGAGGCTAATATTTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGAT 540
consensus_4574#1 ---------TAGTTCTATCCAAACTGCAACACC-----------GGAATTTGGTTAGGCT 331
** ** ** *** *** * ** ****** ** *** *
consensus_4574#0 TATTGTACCTTCATCAGGATTCCAGGCTCAAAATTATTCACAGGGATCTCAAAGCGAGCA 600
consensus_4574#1 CTTTGGTTGTT-----GTGTTCATGGAGAAGAG---------AAGATGTTGCTGTATG-A 376
*** ** * *** ** * * *** * * * *
consensus_4574#0 ATATTCTGCTTGATGATGATTTCAACCCCAAGATATCTGACTTTGGTATGGCTAGAATAT 660
consensus_4574#1 ATACA-TGCCCAACAAGAGCCTTGACTCATTTATTTTTGATGAAAGTAAGAGGCTAATAT 435
*** *** * * * ** * ** * *** *** * *****
consensus_4574#0 TTGGTGAACACCAACTTCAAGCCCTTACCCACCGAATTGTTGGAACCTATGGCTACATCT 720
consensus_4574#1 TTGGATGGAAATTGCGATACAAGATTATTCAGGGAATTGGGAGAGGATTATTGTACCTTC 495
**** * * * *** ** ****** ** * *** *
consensus_4574#0 CTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCG 780
consensus_4574#1 ATCAGGATTCCAGGCTCAAAATT--ATTCACAGGGATCTC-------------------- 533
** ** * * * * **** * * ** **
consensus_4574#0 TGTTGATCCTAGAGATTGTGAGCGGACGAAGGAACAGCTCATTTGTTGATGAAGAATGGT 840
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 CAATGAATCTCTTGGGTTACGCGTGGACACTGTGGAAGGAAGGCAGTGTCTCGGAGCTGA 900
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 TCGATCCACTCATGGGCACCATATGCTCTTACGATGAAGTATGCAGATGCATCCAGGTTG 960
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 GTCTTCTGTGCGTGCAGGAATTACCAGGTGATAGGCCAAGCATGCCCCTGGTGCTCAGGA 1020
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 TGCTCAGTGGGGATGTTACACTTCCTGCTCCGAAGCAAGCTGCATTTTTCGTCGGAAGGG 1080
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 TTCCTCTGGATGATAACAATACTGGATCGGGGAATCAGTTGACGTATACTCAATTGCAAG 1140
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 GCAGATAGCTCCTTGTCAGTGCCTCTGAATCTCTTGTTCAACTTGCCAACCTGGATTACT 1200
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 GAAGTTGGTGTCTCTCATTTTCCCTGTTTGTTTGTTGTTAACCTAGTAATAAACCTGTTA 1260
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 TTATTTTTGTATATAGGTTTGCTTGTAATATGTGGAACTGTAAGCGTATTTGGGAATTGG 1320
consensus_4574#1 ------------------------------------------------------------
consensus_4574#0 AATGCCGTTTGTTTATACATCTGGGTATCAGGGTATGCAACACCAGGAAA 1370
consensus_4574#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||