cluster # 4579

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Oryza sativa
cluster # 4579 cluster # 4579 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4579#0 length = 501 sequences # 2

consensus_4579#1 length = 402 sequences # 1

consensusID : consensus_4579#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 501
fasta sequence

                              [ACCACCTCGACGATGGCTGCGGCGCCGGCGAGGTCGGCGGGGGCGGCGGCGGAGAAGAGGATGGTGGATCCGCCGCGG-GTGGTCG-GGGAGTACAAGCTG-CTGGAGGAGATTGGGGTGGGCTCGTTCGCGAAGGTGTACCTCGCGACGCACCTCCGCACCGGCGATGTCGTGGCGGTGAAGGAGATCGACCCCAGGAGGATCGACGAGCGCGTCCGCGGCGGAATCCTCGAGGAGAAGGCCATCCTCTCCACCCTCTCCCACCCCAACATCCTTCGCCTCATCGACACCATCCAGGAGGAGAATCTGTACCTGATTCTGGAGTACTGCAATGGAGGCGACCTCGAGGGGTACAGGACGAAGGGCGGCGAGGACGCCCGGTTGCCGGACGCCACCGCGAGGGACTTCATGCGGCAGCTCGCGGAAGGGCTCAAGATGCTGAGGGGAAGATCAATCGTGCACCGCGACCTCAAGCCTCAGAATCTTCTGCTATCAACTAATGGT]

[+] EMBL CB632289             [ACCACCTCGACGATGGCTGCGGCGCCGGCGAGGTCGGCGGGGGCGGCGGCGGAGAAGAGGATGGTGGATCCGCCGCGG GTGGTCG GGGAGTACAAGCTG CTGGAGGAGATTGGGGTGGGCTCGTTCGCGAAGGTGTACCTCGCGACGCACCTCCGCACCGGCGATGTCGTGGCGGTGAAGGAGATCGACCCCAGGAGGATCGACGAGCGCGTCCGCGGCGGAATCCTCGAGGAGAAGGCCATCCTCTCCACCCTCTCCCACCCCAACATCCTTCGCCTCATCGACACCATCCAGGAGGAGAATCTGTACCTGATTCTGGAGTACTGCAATGGAGGCGACCTCGAGGGGTACAGGACGAAGGGCGGCGAGGACGCCCGGTTGCCGGACGCCACCGCGAGGGACTTCATGCGGCAGCTCGCGGAAGGGCTCAAGATGCTGAGGGGAAGATCAATCGTGCACCGCGACCTCAAGCCTCAGAATCTTCTGCTATCAACTAATGGT]
[+] EMBL CB620762             [    CCACCACGATGGCTGCGGCGCCGGCGAGGTCGGCGGGGGCGGCGGCGGAGAAGAGGATGGTGGATCCGCCGCGGAGTGGTCGTGGGAGTACAAGCTGACTGGAGGAGATTGGGGTGGGCTCGTTCGCGAAGGTGTACCTCGCGACCCACCTCCGCACCGGCGATGTCGTGGCGGTGAAGGAGATCGACCCCACGAGGATCGACGAGCGCGTCCGCGGCGGAATCCTCGAGGAGAAGGCCATCCTCTCCACCCTCTCCCACCCCAACATCCTTCGCCTCATCGGCACCATCCAGGAGGAGAATCTGTACCTGATTCTGGAGTACTGCAATGGAGGCGACCTCGAGGGGTACAGGACGAAGGGCGGCGAGGACGCCCGGTTGCCGGACGCCACCGCGAGGGACTTCATGCGGCAGCTCGCGGAAGGGCTCAAGATGCTGAGGGGAAGATCAATCGTGCACCGCGACCTCAAGCCTCAGAATCTTCTGCTATCAACTAATGGT]




>consensus_4579#0
ACCACCTCGACGATGGCTGCGGCGCCGGCGAGGTCGGCGGGGGCGGCGGCGGAGAAGAGG
ATGGTGGATCCGCCGCGGGTGGTCGGGGAGTACAAGCTGCTGGAGGAGATTGGGGTGGGC
TCGTTCGCGAAGGTGTACCTCGCGACGCACCTCCGCACCGGCGATGTCGTGGCGGTGAAG
GAGATCGACCCCAGGAGGATCGACGAGCGCGTCCGCGGCGGAATCCTCGAGGAGAAGGCC
ATCCTCTCCACCCTCTCCCACCCCAACATCCTTCGCCTCATCGACACCATCCAGGAGGAG
AATCTGTACCTGATTCTGGAGTACTGCAATGGAGGCGACCTCGAGGGGTACAGGACGAAG
GGCGGCGAGGACGCCCGGTTGCCGGACGCCACCGCGAGGGACTTCATGCGGCAGCTCGCG
GAAGGGCTCAAGATGCTGAGGGGAAGATCAATCGTGCACCGCGACCTCAAGCCTCAGAAT
CTTCTGCTATCAACTAATGGT

consensusID : consensus_4579#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [ACACGCNTCGCCGACCACCATGACGATGGCTGCGGCGCCGGCAAGGTCGGCGGGGGCGGCGGCGGAGAAGAGGATGGTGGATCCNCCGCGGGTGGTCGGGGAGTACAAGCTGCTGGAGGAGATTGGGGTGGGCTCGTNCGCAAAGGTNTACCTCGCAACGNACCTCCGCACCGGCAATGTCGTGGCGGTNAAGGANATCNACCCCAGGAGGNTCGACGAGCGCTTCCGGGCGGAATCCTCGAGGAGAAGGCCATCCTCTCCACCCTTTCCCACCCCAACATCCTTCGCTTCATCGACACCATCCAGGAGGAGAATCTGTACCTAATTCTGGAGTACTTNAATGGAGGCGACCTNGAGGGGTACAGACGAAGGGCGGCGAGACGCCCGGTTTCNGACCGCACC]

[+] EMBL AU162165             [ACACGCNTCGCCGACCACCATGACGATGGCTGCGGCGCCGGCAAGGTCGGCGGGGGCGGCGGCGGAGAAGAGGATGGTGGATCCNCCGCGGGTGGTCGGGGAGTACAAGCTGCTGGAGGAGATTGGGGTGGGCTCGTNCGCAAAGGTNTACCTCGCAACGNACCTCCGCACCGGCAATGTCGTGGCGGTNAAGGANATCNACCCCAGGAGGNTCGACGAGCGCTTCCGGGCGGAATCCTCGAGGAGAAGGCCATCCTCTCCACCCTTTCCCACCCCAACATCCTTCGCTTCATCGACACCATCCAGGAGGAGAATCTGTACCTAATTCTGGAGTACTTNAATGGAGGCGACCTNGAGGGGTACAGACGAAGGGCGGCGAGACGCCCGGTTTCNGACCGCACC]




>consensus_4579#1
ACACGCNTCGCCGACCACCATGACGATGGCTGCGGCGCCGGCAAGGTCGGCGGGGGCGGC
GGCGGAGAAGAGGATGGTGGATCCNCCGCGGGTGGTCGGGGAGTACAAGCTGCTGGAGGA
GATTGGGGTGGGCTCGTNCGCAAAGGTNTACCTCGCAACGNACCTCCGCACCGGCAATGT
CGTGGCGGTNAAGGANATCNACCCCAGGAGGNTCGACGAGCGCTTCCGGGCGGAATCCTC
GAGGAGAAGGCCATCCTCTCCACCCTTTCCCACCCCAACATCCTTCGCTTCATCGACACC
ATCCAGGAGGAGAATCTGTACCTAATTCTGGAGTACTTNAATGGAGGCGACCTNGAGGGG
TACAGACGAAGGGCGGCGAGACGCCCGGTTTCNGACCGCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4579#0      -------------ACCACCTCGACGATGGCTGCGGCGCCGGCGAGGTCGGCGGGGGCGGC 47
consensus_4579#1      ACACGCNTCGCCGACCACCATGACGATGGCTGCGGCGCCGGCAAGGTCGGCGGGGGCGGC 60
                                   ******  ********************* *****************

consensus_4579#0      GGCGGAGAAGAGGATGGTGGATCCGCCGCGGGTGGTCGGGGAGTACAAGCTGCTGGAGGA 107
consensus_4579#1      GGCGGAGAAGAGGATGGTGGATCCNCCGCGGGTGGTCGGGGAGTACAAGCTGCTGGAGGA 120
                      ************************ ***********************************

consensus_4579#0      GATTGGGGTGGGCTCGTTCGCGAAGGTGTACCTCGCGACGCACCTCCGCACCGGCGATGT 167
consensus_4579#1      GATTGGGGTGGGCTCGTNCGCAAAGGTNTACCTCGCAACGNACCTCCGCACCGGCAATGT 180
                      ***************** *** ***** ******** *** ************** ****

consensus_4579#0      CGTGGCGGTGAAGGAGATCGACCCCAGGAGGATCGACGAGCGCGTCCGCGGCGGAATCCT 227
consensus_4579#1      CGTGGCGGTNAAGGANATCNACCCCAGGAGGNTCGACGAGCGCTTCCG-GGCGGAATCCT 239
                      ********* ***** *** *********** *********** **** ***********

consensus_4579#0      CGAGGAGAAGGCCATCCTCTCCACCCTCTCCCACCCCAACATCCTTCGCCTCATCGACAC 287
consensus_4579#1      CGAGGAGAAGGCCATCCTCTCCACCCTTTCCCACCCCAACATCCTTCGCTTCATCGACAC 299
                      *************************** ********************* **********

consensus_4579#0      CATCCAGGAGGAGAATCTGTACCTGATTCTGGAGTACTGCAATGGAGGCGACCTCGAGGG 347
consensus_4579#1      CATCCAGGAGGAGAATCTGTACCTAATTCTGGAGTACTTNAATGGAGGCGACCTNGAGGG 359
                      ************************ *************  ************** *****

consensus_4579#0      GTACAGGACGAAGGGCGGCGAGGACGCCCGGTTGCCGGACGCCACCGCGAGGGACTTCAT 407
consensus_4579#1      GTACAG-ACGAAGGGCGGCGAG-ACGCCCGGTT-TCNGACCGCACC-------------- 402
                      ****** *************** **********  * ***  ****              

consensus_4579#0      GCGGCAGCTCGCGGAAGGGCTCAAGATGCTGAGGGGAAGATCAATCGTGCACCGCGACCT 467
consensus_4579#1      ------------------------------------------------------------
                                                                                  

consensus_4579#0      CAAGCCTCAGAATCTTCTGCTATCAACTAATGGT 501
consensus_4579#1      ----------------------------------