These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [CGAGCTCTCATCCATCCATGAGGATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGACGTTACTGGCTCTCGGTAGACAAGGTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACTTGCACCCAAATGCGGATCTTGCCGACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRGCATTGCGTTGTTCCCGCAGACAATGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTGGTGCACAGCAGGGAGCAGCAGATGGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGCCTGATCCGGCGATCAGGAGTACTACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAATGCCAGTAGCCGCGAACGGAAGGAAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACAAAGAAGCGGCGTTGCCCSCGGTTC] [+] EMBL BE229474 [CGAGCTCTCATCCATCCATGAGGATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGACGTTACTGGCTCTCGGTAGACAAGGTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACTTGCACCCAAATGCGGATCTTGCCGACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRGCATTGCGTTGTTCCCGCAGACAATGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTGGTGCACAGCAGGGAGCAGCAGATGGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGCCTGATCCGGCGATCAGGAGTACTACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAATGCCAGTAGCCGCGAACGGAAGGAAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACAAAGAAGCGGCGTTGCCCSCGGTTC] consensusID : consensus_458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGGATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA] [+] EMBL CA758465 [AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGGATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_458#0 ------------------------------------------------------------ consensus_458#1 AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCT 60 consensus_458#0 -------------------------------------CGAGCTCTCATCCATCCATGAGG 23 consensus_458#1 CTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGG 120 ******************* consensus_458#0 ATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCTCCCTGCATCCCTCCTCAGATCCA 83 consensus_458#1 ATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCA 180 ************** ******* ** * ***** ************************* consensus_458#0 TCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGACGTTACTGGCTCTCGGTAGACAAG 143 consensus_458#1 TCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA---- 236 *************** ********************** ********* **** ** consensus_458#0 GTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACTTGCACCCAAATGCGGATCTTGCC 203 consensus_458#1 ------------------------------------------------------------ consensus_458#0 GACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRGCATTGCGTTGTTCCCGCAGACAA 263 consensus_458#1 ------------------------------------------------------------ consensus_458#0 TGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTGGTGCACAGCAGGGAGCAGCAGAT 323 consensus_458#1 ------------------------------------------------------------ consensus_458#0 GGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGCCTGATCCGGCGATCAGGAGTACT 383 consensus_458#1 ------------------------------------------------------------ consensus_458#0 ACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAATGCCAGTAGCCGCGAACGGAAGG 443 consensus_458#1 ------------------------------------------------------------ consensus_458#0 AAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACAAAGAAGCGGCGTTGCCCSCGGTT 503 consensus_458#1 ------------------------------------------------------------ consensus_458#0 C 504 consensus_458#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||