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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 458 cluster # 458       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_458#0 length = 504 sequences # 1  
consensus_458#1 length = 236 sequences # 1  

consensusID : consensus_458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence
                              [CGAGCTCTCATCCATCCATGAGGATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGACGTTACTGGCTCTCGGTAGACAAGGTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACTTGCACCCAAATGCGGATCTTGCCGACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRGCATTGCGTTGTTCCCGCAGACAATGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTGGTGCACAGCAGGGAGCAGCAGATGGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGCCTGATCCGGCGATCAGGAGTACTACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAATGCCAGTAGCCGCGAACGGAAGGAAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACAAAGAAGCGGCGTTGCCCSCGGTTC]

[+] EMBL BE229474             [CGAGCTCTCATCCATCCATGAGGATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGACGTTACTGGCTCTCGGTAGACAAGGTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACTTGCACCCAAATGCGGATCTTGCCGACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRGCATTGCGTTGTTCCCGCAGACAATGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTGGTGCACAGCAGGGAGCAGCAGATGGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGCCTGATCCGGCGATCAGGAGTACTACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAATGCCAGTAGCCGCGAACGGAAGGAAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACAAAGAAGCGGCGTTGCCCSCGGTTC]


>consensus_458#0 CGAGCTCTCATCCATCCATGAGGATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCT CCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGAC GTTACTGGCTCTCGGTAGACAAGGTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACT TGCACCCAAATGCGGATCTTGCCGACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRG CATTGCGTTGTTCCCGCAGACAATGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTG GTGCACAGCAGGGAGCAGCAGATGGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGC CTGATCCGGCGATCAGGAGTACTACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAA TGCCAGTAGCCGCGAACGGAAGGAAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACA AAGAAGCGGCGTTGCCCSCGGTTC



consensusID : consensus_458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence
                              [AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGGATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA]

[+] EMBL CA758465             [AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGGATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCATCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA]


>consensus_458#1 AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCT CTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGG ATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCA TCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_458#0      ------------------------------------------------------------
consensus_458#1      AAAGCCCCCCTCCTTTAATTTGCACCCTCCCCAAATCTCCATTGCTCCCTCTCTCTCTCT 60
                                                                                 

consensus_458#0      -------------------------------------CGAGCTCTCATCCATCCATGAGG 23
consensus_458#1      CTCTCTCTCTCTCCTTCTCCTCCCCTTCTCTCTCTCTTTCTCTCTCATCCATCCATGAGG 120
                                                              *******************

consensus_458#0      ATCAGGAGGCGGCCTCAGTCCCTGCAAGCTCTCTTCTCCCTGCATCCCTCCTCAGATCCA 83
consensus_458#1      ATCAGGAGGCGGCCCCAGTCCCCGCTGGTTCTCTCCTCCCTGCATCCCTCCTCAGATCCA 180
                     ************** ******* **  * ***** *************************

consensus_458#0      TCCACTGCTCCCCAGCCTCCACCAAGAAACCATGGACGTTACTGGCTCTCGGTAGACAAG 143
consensus_458#1      TCCACTGCTCCCCAGGCTCCACCAAGAAACCATGGACGCTACTGGCTCCCGGTGGA---- 236
                     *************** ********************** ********* **** **    

consensus_458#0      GTGGATGAGGAGGAGAAGAAGTCGGAGCGGTTGCACTTGCACCCAAATGCGGATCTTGCC 203
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      GACGACGACTCGTCGGCGCGATTGCGCGCAGCCGCRGCATTGCGTTGTTCCCGCAGACAA 263
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      TGCGGTTGTRGAATGCAGCAAGATCAGGCCCGTGGTGGTGCACAGCAGGGAGCAGCAGAT 323
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      GGTCACAGGAGCCTAGAGAATGGCCATTACAGCAAGCCTGATCCGGCGATCAGGAGTACT 383
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      ACAGGAGAGCGTCTCGTCAACGGCGTCGTCCGGGCAATGCCAGTAGCCGCGAACGGAAGG 443
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      AAGAGACCAAGAACGACGGCGGCGGCGGCGGCGGACAAAGAAGCGGCGTTGCCCSCGGTT 503
consensus_458#1      ------------------------------------------------------------
                                                                                 

consensus_458#0      C 504
consensus_458#1      -
                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)