cluster # 4584

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Oryza sativa
cluster # 4584 cluster # 4584 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4584#0 length = 311 sequences # 1

consensus_4584#1 length = 203 sequences # 1
consensus_4584#2 length = 178 sequences # 1

consensusID : consensus_4584#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [NCGGCCTTTTGGTGGCCGATAAGNAACCTCTTGCATAAAACCCCAGCTTCCAGTAGCGTTCGTACATGTAAACACTATTCACATGTCCAANAGAGTACCACTCTATTGTCGGCATCTCTTTGCTGTGATGAAACAGCTCTATTAGCAATAACCAGATCTCTCTGAATTTTGACATCATACGACCCTTTTGAATTTTGATGGCCTCGATTACAGAGGCCAGTGTATCTTCCTTGCAACTTGCAACTTAGCAGAGTAGTGTTTTCGCATTGGAATGGAATGAGATGCACTTGATAGTGCAGTGGTAAAAAAAA]

[+] EMBL AU082073             [NCGGCCTTTTGGTGGCCGATAAGNAACCTCTTGCATAAAACCCCAGCTTCCAGTAGCGTTCGTACATGTAAACACTATTCACATGTCCAANAGAGTACCACTCTATTGTCGGCATCTCTTTGCTGTGATGAAACAGCTCTATTAGCAATAACCAGATCTCTCTGAATTTTGACATCATACGACCCTTTTGAATTTTGATGGCCTCGATTACAGAGGCCAGTGTATCTTCCTTGCAACTTGCAACTTAGCAGAGTAGTGTTTTCGCATTGGAATGGAATGAGATGCACTTGATAGTGCAGTGGTAAAAAAAA]




>consensus_4584#0
NCGGCCTTTTGGTGGCCGATAAGNAACCTCTTGCATAAAACCCCAGCTTCCAGTAGCGTT
CGTACATGTAAACACTATTCACATGTCCAANAGAGTACCACTCTATTGTCGGCATCTCTT
TGCTGTGATGAAACAGCTCTATTAGCAATAACCAGATCTCTCTGAATTTTGACATCATAC
GACCCTTTTGAATTTTGATGGCCTCGATTACAGAGGCCAGTGTATCTTCCTTGCAACTTG
CAACTTAGCAGAGTAGTGTTTTCGCATTGGAATGGAATGAGATGCACTTGATAGTGCAGT
GGTAAAAAAAA

consensusID : consensus_4584#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence

                              [TTTTATTGTCGGGCATTTTTTTGCTGGGAGTGAAACACGCTTTATTACCACATAACCCACGATTTTTTTGAATTTTGACATCATACGACCCCTTTGAATTTTGATGGCCTCGATTAACCGAGGCCCACGGGGATTTTCCTTGCAAACTTGCACACTTAGCACGAGTAGTGTTTTTGCACTTGGAATGGAAGAGAGAAGCACTT]

[-] EMBL CB966863             [TTTTATTGTCGGGCATTTTTTTGCTGGGAGTGAAACACGCTTTATTACCACATAACCCACGATTTTTTTGAATTTTGACATCATACGACCCCTTTGAATTTTGATGGCCTCGATTAACCGAGGCCCACGGGGATTTTCCTTGCAAACTTGCACACTTAGCACGAGTAGTGTTTTTGCACTTGGAATGGAAGAGAGAAGCACTT]




>consensus_4584#1
TTTTATTGTCGGGCATTTTTTTGCTGGGAGTGAAACACGCTTTATTACCACATAACCCAC
GATTTTTTTGAATTTTGACATCATACGACCCCTTTGAATTTTGATGGCCTCGATTAACCG
AGGCCCACGGGGATTTTCCTTGCAAACTTGCACACTTAGCACGAGTAGTGTTTTTGCACT
TGGAATGGAAGAGAGAAGCACTT

consensusID : consensus_4584#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [CAGATCTCTCTGAATTTTGACATCATNCGNCCCTTTTGAATTTTGATGGCCTCGATTACAGAGGCCAGTGTATCTTCCTTGCAACTTGCAACTTAGCAGAGTAGTGTTTTCGCATTGGAATGGAATGAGATGACTTGATAGTGCAGTGNNGAGGGGTGCGTGGTTTTAACCCTGAGAT]

[-] EMBL D42705               [CAGATCTCTCTGAATTTTGACATCATNCGNCCCTTTTGAATTTTGATGGCCTCGATTACAGAGGCCAGTGTATCTTCCTTGCAACTTGCAACTTAGCAGAGTAGTGTTTTCGCATTGGAATGGAATGAGATGACTTGATAGTGCAGTGNNGAGGGGTGCGTGGTTTTAACCCTGAGAT]




>consensus_4584#2
CAGATCTCTCTGAATTTTGACATCATNCGNCCCTTTTGAATTTTGATGGCCTCGATTACA
GAGGCCAGTGTATCTTCCTTGCAACTTGCAACTTAGCAGAGTAGTGTTTTCGCATTGGAA
TGGAATGAGATGACTTGATAGTGCAGTGNNGAGGGGTGCGTGGTTTTAACCCTGAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4584#0      NCGGCCTTTTGGTGGCCGATAAGNAACCTCTTGCATAAAACCCCAGCTTCCAGTAGCGTT 60
consensus_4584#1      ------------------------------------------------------------
consensus_4584#2      ------------------------------------------------------------
                                                                                  

consensus_4584#0      CGTACATGTAAACACTATTCACATGTCCAANAGAGTACCACTCTATTGTCGG-CATCTCT 119
consensus_4584#1      ----------------------------------------TTTTATTGTCGGGCATTTTT 20
consensus_4584#2      ------------------------------------------------------------
                                                                                  

consensus_4584#0      TTGCTGTGA-TGAAACA-GCTCTATTAGCA-ATAACCA--GATCTCTCTGAATTTTGACA 174
consensus_4584#1      TTGCTGGGAGTGAAACACGCTTTATTACCACATAACCCACGATTTTTTTGAATTTTGACA 80
consensus_4584#2      -------------------------------------CA-GATCTCTCTGAATTTTGACA 22
                                                              *** * * ************

consensus_4584#0      TCATACGACCCTTTTGAATTTTGATGGCCTCGATTA-CAGAGGCCAGTGT--ATCTTCCT 231
consensus_4584#1      TCATACGACCCCTTTGAATTTTGATGGCCTCGATTAACCGAGGCCCACGGGGATTTTCCT 140
consensus_4584#2      TCATNCGNCCCTTTTGAATTTTGATGGCCTCGATTA-CAGAGGCCAGTGT--ATCTTCCT 79
                      **** ** *** ************************ * ******   *   ** *****

consensus_4584#0      TGCAA-CTTGCA-ACTTAGCA-GAGTAGTGTTTTCGCA-TTGGAATGGAAT-GAGATGCA 286
consensus_4584#1      TGCAAACTTGCACACTTAGCACGAGTAGTGTTTTTGCACTTGGAATGGAAGAGAGAAGCA 200
consensus_4584#2      TGCAA-CTTGCA-ACTTAGCA-GAGTAGTGTTTTCGCA-TTGGAATGGAAT-GAGATG-A 133
                      ***** ****** ******** ************ *** ***********  **** * *

consensus_4584#0      CTTGATAGTGCAGTGGTAAAAAAAA-------------------- 311
consensus_4584#1      CTT------------------------------------------ 203
consensus_4584#2      CTTGATAGTGCAGTGNNGAGGGGTGCGTGGTTTTAACCCTGAGAT 178
                      ***