cluster # 4590

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Oryza sativa
cluster # 4590 cluster # 4590 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4590#0 length = 545 sequences # 1

consensus_4590#1 length = 398 sequences # 2

consensusID : consensus_4590#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [GTACGTGAAGGAAAATGGCGAGAAACGCCGCAACAGCATGTAGTACTCTTCTTCTCCTAATTGCAGCTGCAACGACGCTACTAGTACCAGCAGCCAGTGCGGCCAAGCTAGTGGCTGGCAAGGACGCTGCGACGGCGACGGCGGCGGAGGCGGCTCTTGGTAGCACCGTGGCGCCGTGGGTGGAGGCCGACGCCGGCGGCGTCGTCGGCGGGATGATGATGGTGGCGGCGGCGGCAGGCAGCGTGGAGTACGGGCATGGAGGAGTACACCACCGGCGCGTCCTGCAGGCGCGGGGTGGTGGCAACGTCAACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCCCGGCGCGAGGGGGATCGTACACCGGGAGGGGCAACCAGTGCATCTACCACAACCGATCGTGTTAAGTACGTACGTACCTCGCGACCGATTTTGTTGGGCGCGTTGCCGTTGGATAATAATCTTGGTGCATGATGAGAGACGTTGAGGAAATGTTGACGTTGGATGTTACGAACTTTCGGTCTATACAGTAT]

[+] EMBL AK062807             [GTACGTGAAGGAAAATGGCGAGAAACGCCGCAACAGCATGTAGTACTCTTCTTCTCCTAATTGCAGCTGCAACGACGCTACTAGTACCAGCAGCCAGTGCGGCCAAGCTAGTGGCTGGCAAGGACGCTGCGACGGCGACGGCGGCGGAGGCGGCTCTTGGTAGCACCGTGGCGCCGTGGGTGGAGGCCGACGCCGGCGGCGTCGTCGGCGGGATGATGATGGTGGCGGCGGCGGCAGGCAGCGTGGAGTACGGGCATGGAGGAGTACACCACCGGCGCGTCCTGCAGGCGCGGGGTGGTGGCAACGTCAACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCCCGGCGCGAGGGGGATCGTACACCGGGAGGGGCAACCAGTGCATCTACCACAACCGATCGTGTTAAGTACGTACGTACCTCGCGACCGATTTTGTTGGGCGCGTTGCCGTTGGATAATAATCTTGGTGCATGATGAGAGACGTTGAGGAAATGTTGACGTTGGATGTTACGAACTTTCGGTCTATACAGTAT]




>consensus_4590#0
GTACGTGAAGGAAAATGGCGAGAAACGCCGCAACAGCATGTAGTACTCTTCTTCTCCTAA
TTGCAGCTGCAACGACGCTACTAGTACCAGCAGCCAGTGCGGCCAAGCTAGTGGCTGGCA
AGGACGCTGCGACGGCGACGGCGGCGGAGGCGGCTCTTGGTAGCACCGTGGCGCCGTGGG
TGGAGGCCGACGCCGGCGGCGTCGTCGGCGGGATGATGATGGTGGCGGCGGCGGCAGGCA
GCGTGGAGTACGGGCATGGAGGAGTACACCACCGGCGCGTCCTGCAGGCGCGGGGTGGTG
GCAACGTCAACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCCCGGCGC
GAGGGGGATCGTACACCGGGAGGGGCAACCAGTGCATCTACCACAACCGATCGTGTTAAG
TACGTACGTACCTCGCGACCGATTTTGTTGGGCGCGTTGCCGTTGGATAATAATCTTGGT
GCATGATGAGAGACGTTGAGGAAATGTTGACGTTGGATGTTACGAACTTTCGGTCTATAC
AGTAT

consensusID : consensus_4590#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 398
fasta sequence

                              [AGAGAAAGGCCACAATAGCCTGCTGCCTTCTTCTCCTTGCAGTCGACGTCGCTGCCACAGGAGCAGTTCCGGCGGCTGCGTGGATGGAGGACGACACCGTCGGGATCGACCTCCAGCTTCAGGTGGCGCCGCTGGCGATGGTGCTTGCGGCGGCGGCAGGCGGCGGAGTGGACGATGACCATGAGCTACACCGGCGCGTCCTGCAGGCGCGAGGTGGTTACGTCGACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCTCGCGCCCAGGCAGACCCTACACCGGGAGGGGCAACCTTTGCATCTTCCAGAACCGATCGTGTTGAGTACGTACGTCGTC-TTGATGAAATGTTGTTGAATGAAAC-TGAATTTTGGGTCTGTACCAGTCG]

[+] EMBL AK063211             [AGAGAAAGGCCACAATAGCCTGCTGCCTTCTTCTCCTTGCAGTCGACGTCGCTGCCACAGGAGCAGTTCCGGCGGCTGCGTGGATGGAGGACGACACCGTCGGGATCGACCTCCAGCTTCAGGTGGCGCCGCTGGCGATGGTGCTTGCGGCGGCGGCAGGCGGCGGAGTGGACGATGACCATGAGCTACACCGGCGCGTCCTGCAGGCGCGAGGTGGTTACGTCGACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCTCGCGCCCAGGCAGACCCTACACCGGGAGGGGCAACCTTTGCATCTTCCAGAACCGATCGTGTTGAGTACGTACGTCGTC TTGATGAAATGTTGTTGAATGAAAC TGAATTTTGGGTCTGTACCAGTCG]
[+] EMBL C73855               [                                                          AGGAGCAGTTCCGGCGGCTGCGTGGATGGAGGACGACACCGTCGGGATCGACCTCCAGCTTCAGGCGGCGCCGCTGGCGATGGTGCTTGCGGCGGCGGCAGGCGGCGGAGTGGACGATGACCATGAGCTACACCGGCGCGTCCTGCAGGCGCGAGGTGGTTACGTCGACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCTCGCGCCCAGGCAGACCCTACACCGGGAGGGGCAACCTTTGCATCTTCCAGAACCGATCGTGTTGAGTACGTACGTCGTCTTTGATGAAATGTTGTTGAATGAAACTTGAATTTTGGGTCTTTACCAGTCG]




>consensus_4590#1
AGAGAAAGGCCACAATAGCCTGCTGCCTTCTTCTCCTTGCAGTCGACGTCGCTGCCACAG
GAGCAGTTCCGGCGGCTGCGTGGATGGAGGACGACACCGTCGGGATCGACCTCCAGCTTC
AGGTGGCGCCGCTGGCGATGGTGCTTGCGGCGGCGGCAGGCGGCGGAGTGGACGATGACC
ATGAGCTACACCGGCGCGTCCTGCAGGCGCGAGGTGGTTACGTCGACCCGTCGCTGGTGG
CCGACCGGCAGAGGTGCATCGGCAGCTGCTCGCGCCCAGGCAGACCCTACACCGGGAGGG
GCAACCTTTGCATCTTCCAGAACCGATCGTGTTGAGTACGTACGTCGTCTTGATGAAATG
TTGTTGAATGAAACTGAATTTTGGGTCTGTACCAGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4590#0      GTACGTGAAGGAAAATGGCGAGAAACGCCGCAACAGCATGTAGTACTCTTCTTCTCCTAA 60
consensus_4590#1      ------------------AGAGAAAGGCCACAATAGCCTGCTG---CCTTCTTCTCCT-- 37
                                         ****** *** *** *** **  *    ***********  

consensus_4590#0      TTGCAGCTGCAACGACGCTACTAGTACCAGCAGCCAGTGCGGCCAAGCTAGTGGCTGGCA 120
consensus_4590#1      -TGCAGTCG--ACGTCGCTGCCA----CAGGAGCAGTTCCGGC---------GGCTG-CG 80
                       *****  *  *** **** * *    *** ***   * ****         ***** * 

consensus_4590#0      AGGACGCTGCGACGGCGACGGCGGCGGAGGCGGCTCTTGGTAGCACCGTGGCGCCGTGGG 180
consensus_4590#1      TGGATG----GAGGACGACACCGTCGGGATCGACCTCCAGCTTCA--------------- 121
                       *** *    ** * ****  ** ***   ** *     *   **               

consensus_4590#0      TGGAGGCCGACGCCGGCGGCGTCGTCGGCGGGATGATGATGGTGGCGGCGGCGGCAGGCA 240
consensus_4590#1      --------------GGTGGCGCCGCTGGCG-----ATGGTGCTTGCGGCGGCGGCAGGCG 162
                                    ** **** **  ****     *** ** * *************** 

consensus_4590#0      GCGTGGAGTACGGGCATGGAGGAGTACACCACCGGCGCGTCCTGCAGGCGCGGGGTGGTG 300
consensus_4590#1      GCGGAGTGGACG---ATGACCATGAGCTACACCGGCGCGTCCTGCAGGCGCGAGGTGGTT 219
                      ***  * * ***   ***     *  *  *********************** ****** 

consensus_4590#0      GCAACGTCAACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCCCGGCGC 360
consensus_4590#1      ---ACGTCGACCCGTCGCTGGTGGCCGACCGGCAGAGGTGCATCGGCAGCTGCTCGCGCC 276
                         ***** ******************************************** **   *

consensus_4590#0      GAGGGGGATCGTACACCGGGAGGGGCAACCAGTGCATCTACCACAACCGATCGTGTTAAG 420
consensus_4590#1      CAGGCAGACCCTACACCGGGAGGGGCAACCTTTGCATCTTCCAGAACCGATCGTGTTGAG 336
                       ***  ** * *******************  ******* *** ************* **

consensus_4590#0      TACGTACGTACCTCGCGACCGATT-TTGTTGGGCGCGTTGCCGTTGGATAATAATCTTGG 479
consensus_4590#1      TACGTACGT-CGTCTTGATGAAATGTTGTTGAA-----TGAAACTGAATTTTGGGTCTG- 389
                      ********* * **  **   * * ******       **    ** **  *     ** 

consensus_4590#0      TGCATGATGAGAGACGTTGAGGAAATGTTGACGTTGGATGTTACGAACTTTCGGTCTATA 539
consensus_4590#1      TACCAGTCG--------------------------------------------------- 398
                      * *  *  *                                                   

consensus_4590#0      CAGTAT 545
consensus_4590#1      ------