These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence [CTCGTGCCGGTTTTTTTTTTTTTTTTTTTGAATCAGTTAACTGTGTTGCTTTCAACCGTAATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGACAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGAGCTCGTTTTTATCCACTCANAAAGCTCATCCTCAGTTTCCTCCAGTAACCTTCCACAGAATGAGGATAAATTTTTGGAGTGT] [+] EMBL CF306331 [CTCGTGCCGGTTTTTTTTTTTTTTTTTTTGAATCAGTTAACTGTGTTGCTTTCAACCGTAATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGACAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGAGCTCGTTTTTATCCACTCANAAAGCTCATCCTCAGTTTCCTCCAGTAACCTTCCACAGAATGAGGATAAATTTTTGGAGTGT] [-] EMBL OSR13731A [ cnAGATAGACAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGAGCTCGTTTTTATCCACTCAGAAAGCTCATCCTCAGTNTCCTCCAGTAACCTTCCACAGAATG ] consensusID : consensus_4601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [TTGTNTTTTTTGTTTTTTTTTGCTTTCAACCGTAATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGACAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGANTCGNTTTNATCCACTCAGAAAGCTCATCCTCAGTTTCCTCCAGTAACCTTCCACAGAATG] [-] EMBL AU031739 [TTGTNTTTTTTGTTTTTTTTTGCTTTCAACCGTAATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGACAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATACAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCTGCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGATCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGCTGACATTTCCTGATTCTGCGGANTCGNTTTNATCCACTCAGAAAGCTCATCCTCAGTTTCCTCCAGTAACCTTCCACAGAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4601#0 CTCGTGCCGGTTTTTTTTTTTTTTTTTTTGAATCAGTTAACTGTGTTGCTTTCAACCGTA 60 consensus_4601#1 ----------TTGTNTTTTTTGTTTTTTT----------------TTGCTTTCAACCGTA 34 ** * ****** ******* *************** consensus_4601#0 ATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGA 120 consensus_4601#1 ATTTTAGTATGCAAAATTTGTCTCATGTTCGAATGTTCTCAACAGATTAGTCCAGATAGA 94 ************************************************************ consensus_4601#0 CAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATA 180 consensus_4601#1 CAGACACTATATGGAACGAATTGCAATTCTCCCATTTTAAGGACATGAATTGCAGTGATA 154 ************************************************************ consensus_4601#0 CAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCT 240 consensus_4601#1 CAACATATGAAATCAGAAACTATTTGAGTTTGTTCCTCTACGCTTTCCAGGTCTTCGCCT 214 ************************************************************ consensus_4601#0 GCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGA 300 consensus_4601#1 GCTTTGCTTTGTGAGATAAAGATGGCACCAGAATGCTTTGGTGTTATAGTTCGTCGTCGA 274 ************************************************************ consensus_4601#0 TCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGC 360 consensus_4601#1 TCTCGATGGTAGCACTTGTAGACTGACAGTGTTTGCTAATATCTTCACAAAGTGCTCTGC 334 ************************************************************ consensus_4601#0 TGACATTTCCTGATTCTGCGGAGCTCGTTTTTATCCACTCANAAAGCTCATCCTCAGTTT 420 consensus_4601#1 TGACATTTCCTGATTCTGCGGAN-TCGNTTTNATCCACTCAGAAAGCTCATCCTCAGTTT 393 ********************** *** *** ********* ****************** consensus_4601#0 CCTCCAGTAACCTTCCACAGAATGAGGATAAATTTTTGGAGTGT 464 consensus_4601#1 CCTCCAGTAACCTTCCACAGAATG-------------------- 417 ************************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||