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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1585 fasta sequence
[CTCCCTTTGTGCCCCATGCATGCAAGTAATCTTNTNCTTGGCAAGATTACTCTTCAAGATATTNACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTNGGGAACACATGTATCATGCATTTATNNGTGGTTCTNGCCAAGTGCATCTNGTGTTGATTGCCCTTGGTGGAGTGCGTCATGGTTAGNNCCATTACAGTCCTGTNATGTAGTAGAAGAAATGCTGGCTTTCTTTTCCAGAGGAATGTTGCTACTTACTAGTGTTAGCGTAAATTGTATGCGGAACAACTTCATATCAATGCTGCTCAGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCGTGATACCAACCGAACTGATTGTTATGGTCAGGATGTATCATCATGATGAGGTGCTGTCATCCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCATGTAGGGATATCAGCATGCTAAACAGGAAGCTGTTCATGATTGTTGTCATGGTCTTCTTGACATGATAGTTTTCCAGACACTCCATGATCTCACAGTAGCTACCGAAGCTGCCGCAGCATGCATCTAACAACCATCTTCAGGTACGTCACATCAGCCCATTGTGCAAACGTGCTGCGTCCTGCATGAGACGCCTAATTGACTGTTTATCTGCTTTAGATGTTATATCACCGATTATTAACAGGATACATGGGCCCTAGTAGCAGAGCCAGACGTTGATGTTGCATTTGCAGTTGGACATATCACAAGATCATATCCATCGTTTTGAGAACAGGGTGATAATCTCTGCCGGCAACGATGATTTTACATGATTGCTGATCTACGCAGGCTGGCATTGGCTTCCATGAAATGGACGACAAGGCAACAGGTCCATGCCGACGGTGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACAGGACCTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGGGCGCGACGTTTCACGTCATCATTGGGAGGAGGCACCGGGCGAGTACAGCATCCGGATTTCGAACTGATTTAGTGGTGGGCGCACGTGAACTTCAGCGCATGCCCCACGCTCGCTGCGCTACACCCCATTCTCCCCAATGACCAAGAAATATAAACAGATCATGCCATATTGCAAGCCAACCATAAAATATTCGAGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTG]
[+] EMBL D43041 [CTCCCTTTGTGCCCCATGCATGCAAGTAATCTTNTNCTTGGCAAGATTACTCTTCAAGATATTNACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTNGGGAACACATGTATCATGCATTTATNNGTGGTTCTNGCCAAGTGCATCTNGTGTTGATTGCCCTTGGTGGAGTGCGTCATGGTTAGNNCCATTACAGTCCTGTNATGTA ]
[+] EMBL AK105525 [ tgACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTTGGGAACACATGTATCATGCATTTATTTGTGGTTCTTGCCAAGTGCATCTAGTGTTGATTGCCCTTGGTGGAGTGCGTCATGGTTAGATCCATTACAGTCCTGTCATGTAGTAGAAGAAATGCTGGCTTTCTTTTCCAGAGGAATGTTGCTACTTACTAGTGTTAGCGTAAATTGTATGCGGAACAACTTCATATCAATGCTGCTCAGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCGTGATACCAACCGAACTGATTGTTATGGTCAGGATGTATCATCATGATGAGGTGCTGTCATCCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCATGTAGGGATATCAGCATGCTAAACAGGAAGCTGTTCATGATTGTTGTCATGGTCTTCTTGACATGATAGTTTTCCAGACACTCCATGATCTCACAGTAGCTACCGAAGCTGCCGCAGCATGCATCTAACAACCATCTTCAGGTACGTCACATCAGCCCATTGTGCAAACGTGCTGCGTCCTGCATGAGACGCCTAATTGACTGTTTATCTGCTTTAGATGTTATATCACCGATTATTAACAGGATACATGGGCCCTAGTAGCAGAGCCAGACGTTGATGTTGCATTTGCAGTTGGACATATCACAAGATCATATCCATCGTTTTGAGAACAGGGTGATAATCTCTGCCGGCAACGATGATTTTACATGATTGCTGATCTACGCAGGCTGGCATTGGCTTCCATGAAATGGACGACAAGGCAACAGGTCCATGCCGACGGTGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACAGGACCTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGGGCGCGACGTTTCACGTCATCATTGGGAGGAGGCACCGGGCGAGTACAGCATCCGGATTTCGAACTGATTTAGTGGTGGGCGCACGTGAACTTCAGCGCATGCCCCACGCTCGCTGCGCTACACCCCATTCTCCCCAATGACCAAGAAATATAAACAGATCATGCCATATTGCAAGCCAACCATAAAATATTCGAGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTG]
consensusID : consensus_4614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence
[CGCCCGCAACGGCGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTGCAAAAAAAAA]
[+] EMBL CF326658 [CGCCCGCAACGGCGAGCGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAGAGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGCCAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGTTCAGGGCAATGTGTTGCTTTCTCTGCAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4614#0 CTCCCTTTGTGCCCCATGCATGCAAGTAATCTTNTNCTTGGCAAGATTACTCTTCAAGAT 60
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 ATTNACTGTACTCGATTTGTTGATGTGGAGTAAAACACACTTGCATAATACCTCTNGGGA 120
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 ACACATGTATCATGCATTTATNNGTGGTTCTNGCCAAGTGCATCTNGTGTTGATTGCCCT 180
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 TGGTGGAGTGCGTCATGGTTAGNNCCATTACAGTCCTGTNATGTAGTAGAAGAAATGCTG 240
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 GCTTTCTTTTCCAGAGGAATGTTGCTACTTACTAGTGTTAGCGTAAATTGTATGCGGAAC 300
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 AACTTCATATCAATGCTGCTCAGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCG 360
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 TGATACCAACCGAACTGATTGTTATGGTCAGGATGTATCATCATGATGAGGTGCTGTCAT 420
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 CCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCATGTAGGGATATCAGCATGC 480
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 TAAACAGGAAGCTGTTCATGATTGTTGTCATGGTCTTCTTGACATGATAGTTTTCCAGAC 540
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 ACTCCATGATCTCACAGTAGCTACCGAAGCTGCCGCAGCATGCATCTAACAACCATCTTC 600
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 AGGTACGTCACATCAGCCCATTGTGCAAACGTGCTGCGTCCTGCATGAGACGCCTAATTG 660
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 ACTGTTTATCTGCTTTAGATGTTATATCACCGATTATTAACAGGATACATGGGCCCTAGT 720
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 AGCAGAGCCAGACGTTGATGTTGCATTTGCAGTTGGACATATCACAAGATCATATCCATC 780
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 GTTTTGAGAACAGGGTGATAATCTCTGCCGGCAACGATGATTTTACATGATTGCTGATCT 840
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 ACGCAGGCTGGCATTGGCTTCCATGAAATGGACGACAAGGCAACAGGTCCATGCCGACGG 900
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 TGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACAGGAC 960
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 CTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGGGCGCGACGTTTCACGTC 1020
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 ATCATTGGGAGGAGGCACCGGGCGAGTACAGCATCCGGATTTCGAACTGATTTAGTGGTG 1080
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 GGCGCACGTGAACTTCAGCGCATGCCCCACGCTCGCTGCGCTACACCCCATTCTCCCCAA 1140
consensus_4614#1 ------------------------------------------------------------
consensus_4614#0 TGACCAAGAAATATAAACAGATCATGCCATATTGCAAGCCAACCATAAAATATTCGAGAG 1200
consensus_4614#1 ---------------------------------------CGCCCGCAA-----CGGCGAG 16
* ** ** * ***
consensus_4614#0 CGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTG 1260
consensus_4614#1 CGTGGCATCCTCGACCTCCACCAGGACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTG 76
************************************************************
consensus_4614#0 ATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCG 1320
consensus_4614#1 ATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCGCCGCGGAAGCGTGCG 136
************************************************************
consensus_4614#0 TTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGC 1380
consensus_4614#1 TTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGC 196
************************************************************
consensus_4614#0 ATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAG 1440
consensus_4614#1 ATGCAGCAGCGTGAACCGAATCCTACTGCCGATTGCAACTTCGCCATGTAAAACGGAGAG 256
************************************************************
consensus_4614#0 AGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGC 1500
consensus_4614#1 AGGGGCATCTCTTCCTCTGCCTGACTGCCTCTGCAATTGAGATGTTGCAAGATACTGTGC 316
************************************************************
consensus_4614#0 CAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGT 1560
consensus_4614#1 CAAATTGCTCAATGGCTCGTGATGGCCTGATCTATTGTGTACAAAGACTCTGTATATAGT 376
************************************************************
consensus_4614#0 TCAGGGCAATGTGTTGCTTTCTCTG---------- 1585
consensus_4614#1 TCAGGGCAATGTGTTGCTTTCTCTGCAAAAAAAAA 411
*************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||