These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1602 fasta sequence [CAGNGNACGCGTGGGACGGACGTGTGGGGCGCGCGCCGTCCTCCCCCACCGCCATGGCGCCGCCGTCACGGCATGTGGACGCGGTCGCCGCCGTTCTCCCTGTCCTCCTCACGATCCTTCTGCCTTCCGCCGCCGCAATCGGCGTCAACTACGGCACCAAGGGAGACAACCTGCCGCCGCCGGCCACCGTGGCGAAGTTCCTCGCGAACCGCACCCGCATCGACCGGGTGAAGCTGTTCGACACCAACCCGGACATCGTCAAGGCCTTCGCCGGCACGGGCATCACGGTCATGGTCACNGCCGGAAACGGGAACATCCCGACGCTGGGCACCAAGGACGGCG-CG-CGCCTTGGTGGCGGCGAACATCGCGCCGTACTACCCGGCGACGGACATCTCCCTCGTGGCCGTCGGCAACGAGATCATCAACACGGCGGACAACGCCCTCATCGGCGGCCTCGTCCCGGCCATGCGCACCCTCAGGGCGGCGCTCGTCGCCGCCGGCTTCCGGCGCATCCGCGTCTCGACGCCGCACTCCCTCGGCATCCTGTCCGTCTCCTCGCCACCGTCGGCGAGCCGGTTCCTCGACGTCCTCGACCGCACCTTCTTCGCGCCGATGCTGGAGTTCCTCCGCAAGACCAAGTCTCCGTTCGTCGTCAACCCGTACCCCTACTTCGGCTACAACGGCGACACGATCCCGTACGCGCTGGCGCGGCGCCCCAACCCCGGCGTGCTCGACCCGGGCACGGGCATCACCTACACCAGCATGCTCGAGGCGCAGCTGGACTCGGTGTTCTCGGCGATGAAGAAGCTGGGGTTCGAGGACGTGGACATCACGGTGGGGGAGACCGGGTGGCCGACCAAGGCGGAGCCCGGACAAGCCGGCGTGAGCGTCGCCGAGGCGGCGGAGTACAACCGCTACCTCATCGGAGAGGCCAGCTCGGGGTCGGGGACGCCGCTCATGCCGAAGCGGACGTTCGAGACCTACATCTTCGCGCTCTTCAACGAGAACCTCAAGCCGGGTCCCATCGCCGAGCGCAACTTCGGCCTCTTCAAGCCCGACCTCACGCCCATGTACGACGTCGGCCTCATGAAAGACACGGGGAAGTCATCAGCGTCGGCGCCGGCGCCGGCGAAGGGCGGCAATGCCAGCGGCGCCGCCGTGACGAAGCGTGACTCGGAGTCGGAGGCCGCCGCGCCGGCTGATGAGGCGAGTGCGCCCGCGCCGTCGTCGGTGGGGAAGAAGGTCTCCACGAAGGCCACCGCGCCGGCACCGTCGGACGACGGCTCGGCCTCGCCGGAGCCATCGGAGGGCGAATCGGCCGACGAGAAGAATCCGGAGGAGGAGGAGGAGGAAGAGGGGGATGATGCCGCCGCGACGACGACGCCGGGGGGCGACGGCGACTCGCCGGAGACGGAAGCCGCGGGTGATGATGCTAAAGAGAGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATGTTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTTCTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATT] [+] EMBL C72847 [CAGNGNACGCGTGGGACGGACGTGTGGGGCGCGCGCCGTCCTCCCCCACCGCCATGGCGCCGCCGTCACGGCATGTGGACGCGGTCGCCGCCGTTCTCCCTGTCCTCCTCACGATCCTTCTGCCTTCCGCCGCCGCAATCGGCGTCAACTACGGCACCAAGGGAGACAACCTGCCGCCGCCGGCCACCGTGGCGAAGTTCCTCGCGAACCGCACCCGCATCGACCGGGTGAAGCTGTTCGACACCAACCCGGACATCGTCAAGGCCTTCGCCGGCACGGGCATCACGGTCATGGTCACNGCCGGAAACGGGAACATCCCGACGCTGGGCACCAAGGACGGCG CG CGCCTTGG ] [+] EMBL AK068978 [ attGCGCGCGCCGTCCTCCCCCACCGCCATGGCGCCGCCGTCACGGCATGTGGACGCGGTCGCCGCCGTTCTCCCTGTCCTCCTCACGATCCTTCTGCCTTCCGCCGCCGCAATCGGCGTCAACTACGGCACCAAGGGAGACAACCTGCCGCCGCCGGCCACCGTGGCGAAGTTCCTCGCGAACCGCACCCGCATCGACCGGGTGAAGCTGTTCGACACCAACCCGGACATCGTCAAGGCCTTCGCCGGCACGGGCATCACGGTCATGGTCACCGCCGGAAACGGCGACATCCCGACGCTGGGCACCAAGGACGGCGCCGCCGCCTGGGTGGCGGCGAACATCGCGCCGTACTACCCGGCGACGGACATCTCCCTCGTGGCCGTCGGCAACGAGATCATCAACACGGCGGACAACGCCCTCATCGGCGGCCTCGTCCCGGCCATGCGCACCCTCAGGGCGGCGCTCGTCGCCGCCGGCTTCCGGCGCATCCGCGTCTCGACGCCGCACTCCCTCGGCATCCTGTCCGTCTCCTCGCCACCGTCGGCGAGCCGGTTCCTCGACGTCCTCGACCGCACCTTCTTCGCGCCGATGCTGGAGTTCCTCCGCAAGACCAAGTCTCCGTTCGTCGTCAACCCGTACCCCTACTTCGGCTACAACGGCGACACGATCCCGTACGCGCTGGCGCGGCGCCCCAACCCCGGCGTGCTCGACCCGGGCACGGGCATCACCTACACCAGCATGCTCGAGGCGCAGCTGGACTCGGTGTTCTCGGCGATGAAGAAGCTGGGGTTCGAGGACGTGGACATCACGGTGGGGGAGACCGGGTGGCCGACCAAGGCGGAGCCCGGACAAGCCGGCGTGAGCGTCGCCGAGGCGGCGGAGTACAACCGCTACCTCATCGGAGAGGCCAGCTCGGGGTCGGGGACGCCGCTCATGCCGAAGCGGACGTTCGAGACCTACATCTTCGCGCTCTTCAACGAGAACCTCAAGCCGGGTCCCATCGCCGAGCGCAACTTCGGCCTCTTCAAGCCCGACCTCACGCCCATGTACGACGTCGGCCTCATGAAAGACACGGGGAAGTCATCAGCGTCGGCGCCGGCGCCGGCGAAGGGCGGCAATGCCAGCGGCGCCGCCGTGACGAAGCGTGACTCGGAGTCGGAGGCCGCCGCGCCGGCTGATGAGGCGAGTGCGCCCGCGCCGTCGTCGGTGGGGAAGAAGGTCTCCACGAAGGCCACCGCGCCGGCACCGTCGGACGACGGCTCGGCCTCGCCGGAGCCATCGGAGGGCGAATCGGCCGACGAGAAGAATCCGGAGGAGGAGGAGGAGGAAGAGGGGGATGATGCCGCCGCGACGACGACGCCGGGGGGCGACGGCGACTCGCCGGAGACGGAAGCCGCGGGTGATGATGCTAAAGAGAGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATGTTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTTCTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATT] consensusID : consensus_4615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 243 fasta sequence [AGAGGACGAGACAAGGGGTGATGATGCTAAAGAGAGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATGTTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTTCTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATTGGTTTTTGCCAAACACTGAAAAACTGCTTCTGTTAAAAAAAAAAAAA] [-] EMBL CA761187 [AGAGGACGAGACAAGGGGTGATGATGCTAAAGAGAGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATGTTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTTCTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATTGGTTTTTGCCAAACACTGAAAAACTGCTTCTGTTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4615#0 CAGNGNACGCGTGGGACGGACGTGTGGGGCGCGCGCCGTCCTCCCCCACCGCCATGGCGC 60 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 CGCCGTCACGGCATGTGGACGCGGTCGCCGCCGTTCTCCCTGTCCTCCTCACGATCCTTC 120 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 TGCCTTCCGCCGCCGCAATCGGCGTCAACTACGGCACCAAGGGAGACAACCTGCCGCCGC 180 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 CGGCCACCGTGGCGAAGTTCCTCGCGAACCGCACCCGCATCGACCGGGTGAAGCTGTTCG 240 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 ACACCAACCCGGACATCGTCAAGGCCTTCGCCGGCACGGGCATCACGGTCATGGTCACNG 300 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 CCGGAAACGGGAACATCCCGACGCTGGGCACCAAGGACGGCGCGCGCCTTGGTGGCGGCG 360 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 AACATCGCGCCGTACTACCCGGCGACGGACATCTCCCTCGTGGCCGTCGGCAACGAGATC 420 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 ATCAACACGGCGGACAACGCCCTCATCGGCGGCCTCGTCCCGGCCATGCGCACCCTCAGG 480 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 GCGGCGCTCGTCGCCGCCGGCTTCCGGCGCATCCGCGTCTCGACGCCGCACTCCCTCGGC 540 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 ATCCTGTCCGTCTCCTCGCCACCGTCGGCGAGCCGGTTCCTCGACGTCCTCGACCGCACC 600 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 TTCTTCGCGCCGATGCTGGAGTTCCTCCGCAAGACCAAGTCTCCGTTCGTCGTCAACCCG 660 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 TACCCCTACTTCGGCTACAACGGCGACACGATCCCGTACGCGCTGGCGCGGCGCCCCAAC 720 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 CCCGGCGTGCTCGACCCGGGCACGGGCATCACCTACACCAGCATGCTCGAGGCGCAGCTG 780 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 GACTCGGTGTTCTCGGCGATGAAGAAGCTGGGGTTCGAGGACGTGGACATCACGGTGGGG 840 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 GAGACCGGGTGGCCGACCAAGGCGGAGCCCGGACAAGCCGGCGTGAGCGTCGCCGAGGCG 900 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 GCGGAGTACAACCGCTACCTCATCGGAGAGGCCAGCTCGGGGTCGGGGACGCCGCTCATG 960 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 CCGAAGCGGACGTTCGAGACCTACATCTTCGCGCTCTTCAACGAGAACCTCAAGCCGGGT 1020 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 CCCATCGCCGAGCGCAACTTCGGCCTCTTCAAGCCCGACCTCACGCCCATGTACGACGTC 1080 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 GGCCTCATGAAAGACACGGGGAAGTCATCAGCGTCGGCGCCGGCGCCGGCGAAGGGCGGC 1140 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 AATGCCAGCGGCGCCGCCGTGACGAAGCGTGACTCGGAGTCGGAGGCCGCCGCGCCGGCT 1200 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 GATGAGGCGAGTGCGCCCGCGCCGTCGTCGGTGGGGAAGAAGGTCTCCACGAAGGCCACC 1260 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 GCGCCGGCACCGTCGGACGACGGCTCGGCCTCGCCGGAGCCATCGGAGGGCGAATCGGCC 1320 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 GACGAGAAGAATCCGGAGGAGGAGGAGGAGGAAGAGGGGGATGATGCCGCCGCGACGACG 1380 consensus_4615#1 ------------------------------------------------------------ consensus_4615#0 ACGCCGGGGGGCGACGGCGACTCGCCGGAGACGGAAGCCGCGGGTGATGATGCTAAAGAG 1440 consensus_4615#1 --------------------------AGAGGACGAGACAAGGGGTGATGATGCTAAAGAG 34 *** ** * ******************* consensus_4615#0 AGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATG 1500 consensus_4615#1 AGCGAGGGAAAAAACAACCCCCATGGCCATGGAGATTCTTCAGAAGCTATCAGTGTTATG 94 ************************************************************ consensus_4615#0 TTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTT 1560 consensus_4615#1 TTCTCTGTACCTTCCATGCTTACAATTGCTCTGTCTGCAATACTTCTTCATCTCTAACTT 154 ************************************************************ consensus_4615#0 CTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATT------------------ 1602 consensus_4615#1 CTCCTCAACTCATGGTGTAACAATAGTGCAAATACTAACATTGGTTTTTGCCAAACACTG 214 ****************************************** consensus_4615#0 ----------------------------- consensus_4615#1 AAAAACTGCTTCTGTTAAAAAAAAAAAAA 243 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||